| Clone Name | baet24f04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 88 gtcgtcgccacctccccaccacacacgcgc 117 |||||||||||||| ||||||||||||||| Sbjct: 135657 gtcgtcgccacctcaccaccacacacgcgc 135686
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 88 gtcgtcgccacctccccaccacacacgcgc 117 |||||||||||||| ||||||||||||||| Sbjct: 21442746 gtcgtcgccacctcaccaccacacacgcgc 21442775
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 88 gtcgtcgccacctccccaccacacacgcgc 117 |||||||||||||| ||||||||||||||| Sbjct: 21435775 gtcgtcgccacctcaccaccacacacgcgc 21435804
>gb|AY104509.1| Zea mays PCO104742 mRNA sequence Length = 1501 Score = 46.1 bits (23), Expect = 0.086 Identities = 26/27 (96%) Strand = Plus / Plus Query: 88 gtcgtcgccacctccccaccacacacg 114 ||||| ||||||||||||||||||||| Sbjct: 15 gtcgttgccacctccccaccacacacg 41
>gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174309 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 ccacacctgcaaaaccaaagga 217 |||||||||||||||||||||| Sbjct: 36245 ccacacctgcaaaaccaaagga 36224
>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence Length = 268984 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 accacacacgcgcgctctcgc 125 ||||||||||||||||||||| Sbjct: 235913 accacacacgcgcgctctcgc 235933
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 tcgtcgccacctccccaccac 109 ||||||||||||||||||||| Sbjct: 141845 tcgtcgccacctccccaccac 141825
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 caccgtcgtcacctgccggag 369 ||||||||||||||||||||| Sbjct: 3656834 caccgtcgtcacctgccggag 3656814
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 tcgtcgccacctccccaccac 109 ||||||||||||||||||||| Sbjct: 721 tcgtcgccacctccccaccac 701
>gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0079E01, complete sequence Length = 132870 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 gccgtcgtccgcgcggccgcc 397 ||||||||||||||||||||| Sbjct: 10392 gccgtcgtccgcgcggccgcc 10372
>gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053D03, from chromosome 10, complete sequence Length = 199113 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 gccgtcgtccgcgcggccgcc 397 ||||||||||||||||||||| Sbjct: 174168 gccgtcgtccgcgcggccgcc 174148
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 gccgtcgtccgcgcggccgcc 397 ||||||||||||||||||||| Sbjct: 8082311 gccgtcgtccgcgcggccgcc 8082331
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 tcgtcgccacctccccaccac 109 ||||||||||||||||||||| Sbjct: 4631378 tcgtcgccacctccccaccac 4631358
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 375 cggccgtcgtccgcgcggccgcctc 399 ||||| ||||||||||||||||||| Sbjct: 1019151 cggccatcgtccgcgcggccgcctc 1019175
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 gccgtcgtccgcgcggccgcc 397 ||||||||||||||||||||| Sbjct: 8087410 gccgtcgtccgcgcggccgcc 8087430
>gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome 16, complete sequence Length = 206814 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tccacacctgcaaaaccaaa 214 |||||||||||||||||||| Sbjct: 64432 tccacacctgcaaaaccaaa 64451
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 cgcacgcgcgatggccacca 275 |||||||||||||||||||| Sbjct: 859289 cgcacgcgcgatggccacca 859270
>ref|XM_365709.1| Magnaporthe grisea 70-15 hypothetical protein (MG02411.4) partial mRNA Length = 1191 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gcggcggcggcagcaccgcc 316 |||||||||||||||||||| Sbjct: 509 gcggcggcggcagcaccgcc 490
>gb|BC030197.1| Homo sapiens G protein-coupled receptor 150, mRNA (cDNA clone IMAGE:5199056), containing frame-shift errors Length = 1145 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gccgcctgtgcggcggcggc 307 |||||||||||||||||||| Sbjct: 392 gccgcctgtgcggcggcggc 411
>ref|NM_199243.1| Homo sapiens G protein-coupled receptor 150 (GPR150), mRNA Length = 1305 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gccgcctgtgcggcggcggc 307 |||||||||||||||||||| Sbjct: 194 gccgcctgtgcggcggcggc 213
>gb|AC182706.2| Populus trichocarpa clone Pop1-79P19, complete sequence Length = 102226 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tccccaccacacacgcgcgc 119 |||||||||||||||||||| Sbjct: 8031 tccccaccacacacgcgcgc 8012
>ref|XM_804187.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506399.80) partial mRNA Length = 1221 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 gcggcggcggcagcaccgcc 316 |||||||||||||||||||| Sbjct: 211 gcggcggcggcagcaccgcc 230
>gb|AC005094.1| Homo sapiens BAC clone CTA-332B22 from 7, complete sequence Length = 158078 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 atttaagtgaagaagcaggcagag 240 ||||||||||||||||||| |||| Sbjct: 3742 atttaagtgaagaagcaggtagag 3719
>gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, complete sequence Length = 240699 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 atttaagtgaagaagcaggcagag 240 ||||||||||||||||||| |||| Sbjct: 88274 atttaagtgaagaagcaggtagag 88251
>gb|AY273926.1| Hordeum vulgare subsp. vulgare putative cyclic nucleotide and calmodulin-regulated ion channel protein mRNA, partial cds Length = 1424 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gcggcggcggcagcaccgcc 316 |||||||||||||||||||| Sbjct: 1153 gcggcggcggcagcaccgcc 1134
>gb|AC154513.2| Mus musculus BAC clone RP24-72F2 from chromosome 16, complete sequence Length = 197862 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tccacacctgcaaaaccaaa 214 |||||||||||||||||||| Sbjct: 166435 tccacacctgcaaaaccaaa 166454
>gb|AE011794.1| Xanthomonas axonopodis pv. citri str. 306, section 172 of 469 of the complete genome Length = 12178 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cagttgcccaacgatcatct 60 |||||||||||||||||||| Sbjct: 8032 cagttgcccaacgatcatct 8013
>gb|AC099056.2| Homo sapiens chromosome 3 clone RP11-585O21, complete sequence Length = 182405 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 aactcaggcatcctccacac 201 |||||||||||||||||||| Sbjct: 13393 aactcaggcatcctccacac 13374
>gb|AC099545.2| Homo sapiens chromosome 3 clone RP11-601G18, complete sequence Length = 158485 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 aactcaggcatcctccacac 201 |||||||||||||||||||| Sbjct: 143198 aactcaggcatcctccacac 143179
>gb|AC093783.2| Homo sapiens BAC clone RP11-209D20 from 4, complete sequence Length = 121709 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 agtgaagaagcaggcagaga 241 |||||||||||||||||||| Sbjct: 108643 agtgaagaagcaggcagaga 108624
>gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, complete sequence Length = 168708 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gccgcctgtgcggcggcggc 307 |||||||||||||||||||| Sbjct: 57912 gccgcctgtgcggcggcggc 57893
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggccgtcgtccgcgcggccg 395 |||||||||||||||||||| Sbjct: 1071948 ggccgtcgtccgcgcggccg 1071929
>gb|AY972628.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG090 cyclic nucleotide-gated ion channel 2 (CNGC2) gene, partial cds Length = 5163 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gcggcggcggcagcaccgcc 316 |||||||||||||||||||| Sbjct: 4146 gcggcggcggcagcaccgcc 4127
>gb|AC008547.6| Homo sapiens chromosome 5 clone CTC-502M5, complete sequence Length = 114005 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gccgcctgtgcggcggcggc 307 |||||||||||||||||||| Sbjct: 65293 gccgcctgtgcggcggcggc 65312
>gb|AC018662.3|AC018662 Human Chromosome 7 clone RP11-339C9, complete sequence Length = 173845 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 aagtgaagaagcaggcagag 240 |||||||||||||||||||| Sbjct: 6813 aagtgaagaagcaggcagag 6794
>gb|AC008039.1|AC008039 Homo sapiens clone SCb-391H5 from 7q31, complete sequence Length = 197346 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 aagtgaagaagcaggcagag 240 |||||||||||||||||||| Sbjct: 112483 aagtgaagaagcaggcagag 112464
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 ctcggccgtcgtccgcgcggccgc 396 ||||||||||| |||||||||||| Sbjct: 1489938 ctcggccgtcgaccgcgcggccgc 1489961
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ccgcctgtgcggcggcggca 308 |||||||||||||||||||| Sbjct: 718986 ccgcctgtgcggcggcggca 718967
>gb|AC157939.15| Mus musculus chromosome 3, clone RP23-51P17, complete sequence Length = 240367 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tccacacctgcaaaaccaaa 214 |||||||||||||||||||| Sbjct: 163117 tccacacctgcaaaaccaaa 163136
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 gcggcggcagcaccgccttc 319 |||||||||||||||||||| Sbjct: 480804 gcggcggcagcaccgccttc 480823
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.3 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 333 gccggcctgcgcgggccaccgtcgtcacctgccgga 368 |||||||| ||| ||||||||||||| ||||||||| Sbjct: 1018198 gccggcct-cgcaggccaccgtcgtctcctgccgga 1018232
>dbj|AB048974.1| Macaca fascicularis brain cDNA, clone:QnpA-12139 Length = 1994 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 agtgaagaagcaggcagaga 241 |||||||||||||||||||| Sbjct: 1249 agtgaagaagcaggcagaga 1268
>dbj|AB065678.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_241 Length = 1705 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gccgcctgtgcggcggcggc 307 |||||||||||||||||||| Sbjct: 394 gccgcctgtgcggcggcggc 413 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,481,946 Number of Sequences: 3902068 Number of extensions: 3481946 Number of successful extensions: 77682 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 76870 Number of HSP's gapped (non-prelim): 813 length of query: 399 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 377 effective length of database: 17,147,199,772 effective search space: 6464494314044 effective search space used: 6464494314044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)