>CRCB_NEIMB (Q9JZG6) Protein crcB homolog|
          Length = 119

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 200 LGMAARKLANHAIVXXXXXXXXRHFLKWL-AFIAAVYLLVLDRTNWKTNMLTGLL 361
           LG  AR L N A+           F  W+ AF+  ++   ++   WK  ++TG L
Sbjct: 14  LGATARWLLNLAVPASIPPATGNLFANWIGAFLIGIFAETVNHPQWKLLLITGFL 68

>CRCB_NEIMA (Q9JUL1) Protein crcB homolog|
          Length = 119

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 200 LGMAARKLANHAIVXXXXXXXXRHFLKWL-AFIAAVYLLVLDRTNWKTNMLTGLL 361
           LG  AR L N A+           F  W  AF+  ++   ++   WK  ++TG L
Sbjct: 14  LGATARWLLNLAVPASLSPATGNLFANWTGAFLIGIFAETVNHPQWKLLLITGFL 68

>TIO_ATHV3 (Q9YJQ8) Protein tio|
          Length = 269

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 49  ELDPHSARLEIFPGLGDSGEDGPV-VPRD 132
           E   H      FP LGDSGE+GP  +P+D
Sbjct: 4   EPQEHEEGKPFFPPLGDSGEEGPPNIPQD 32

>RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) (ERC1)|
            (CAZ-associated structural protein 2) (CAST2)
          Length = 1120

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 4    TNQTPSPRPSIHPCAELDPHSARLEIFPG 90
            TN  PSP   I P  ELD + ++L+++ G
Sbjct: 1004 TNHKPSPDQIIQPLLELDQNRSKLKLYIG 1032

>YNI7_YEAST (P48231) Hypothetical 132.5 kDa protein in TOP2-MKT1 intergenic|
            region
          Length = 1178

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 1    STNQTPSPRPSIHPCAELDPHSARLEIFPGLGDSGEDGPVV 123
            STN   S   ++ P + +DP S      P +G  GEDG V+
Sbjct: 1059 STNSNRSIGKAVVPLSTIDPESDTTFNIPLVGPKGEDGGVL 1099

>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)|
          Length = 1116

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 4    TNQTPSPRPSIHPCAELDPHSARLEIFPG 90
            TN  PSP   I P  ELD + ++L+++ G
Sbjct: 1000 TNHKPSPDQIIQPLLELDQNRSKLKLYIG 1028

>FOXD4_MOUSE (Q60688) Forkhead box protein D4 (Forkhead-related protein FKHL9)|
           (Forkhead-related transcription factor 5) (FREAC-5)
           (Transcription factor FKH-2)
          Length = 444

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +1

Query: 16  PSPRPSIHPCAELDPHSAR--LEIFPGLGDS 102
           P+  P  HPCA L PH  R  L   P  GD+
Sbjct: 246 PAAPPRSHPCAPLHPHPMRYLLLAAPAYGDN 276

>AGAR_STRCO (P07883) Extracellular agarase precursor (EC 3.2.1.81)|
          Length = 309

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 337 DQHADGTLGPLHFLHPARRAFLSD 408
           DQH DG  GP + L+ AR ++++D
Sbjct: 75  DQHKDGWSGPANSLYSARHSWVAD 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,837,506
Number of Sequences: 219361
Number of extensions: 644526
Number of successful extensions: 2260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)