>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional|
           corepressor Sin3a) (Histone deacetylase complex subunit
           Sin3a)
          Length = 1273

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 273 HQTTLYGSQPTPQPNPRHNGMAVAGSTVDSRN*CCSPPDRRRVSESQ 133
           HQ   +G QP PQP P+H     A S          PP  +    SQ
Sbjct: 209 HQIPTHGIQPQPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQ 255

>XRN1_YEAST (P22147) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand exchange|
            protein 1) (KAR(-)-enhancing mutation protein) (5'-3'
            exoribonuclease) (DNA strand transfer protein beta)
            (STP-beta) (p175)
          Length = 1528

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 291  PPARMTHQTTLYGSQPTPQPNPRHNGMAV 205
            PP  MTH   L+   P   P P  NGM++
Sbjct: 1402 PPGFMTHPNGLHPLHPHQMPYPNMNGMSI 1430

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -2

Query: 321 AAHARRQLTKPPARMTHQTTLYGSQPTPQPNPRHNGMAVAGSTVDSRN*CCSPPDRRR 148
           ++  RR  + PPAR     +     P P P PR         T   R    SPP RRR
Sbjct: 555 SSRRRRSPSPPPARRRRSPSPAPPPPPPPPPPRRR----RSPTPPPRRRTPSPPPRRR 608

>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional|
           corepressor Sin3a) (Histone deacetylase complex subunit
           Sin3a)
          Length = 1282

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 273 HQTTLYGSQPTPQPNPRH 220
           HQ   +G QP PQP P+H
Sbjct: 209 HQIPTHGIQPQPQPPPQH 226

>LEP4_PECCC (P31712) Type 4 prepilin-like proteins leader peptide-processing|
           enzyme (Pectic enzymes secretion protein outO)
           [Includes: Leader peptidase (EC 3.4.23.43) (Prepilin
           peptidase); N-methyltransferase (EC 2.1.1.-)]
          Length = 279

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 115 KSVKLSLRLADPSS---VWGAATSVPRIYGAASHRHSIVPWIWLWRGLGTVQCC 267
           + ++L   +ADP +   +W   +S P    A + + +I  + WLW   G  +CC
Sbjct: 47  QDIELETGVADPDTRYNLWWPPSSCPHCQQAIAVKDNIPLFSWLWL-RGRSRCC 99

>APC_RAT (P70478) Adenomatous polyposis coli protein (Protein APC)|
          Length = 2842

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -3

Query: 257  TVPSPRH---NQIQGTMEWRWLAAP*IRGTDVAAPQTDDGSASRNESLTDLF 111
            +VP PR    NQ+     WR +    I  T+  +  T  G+AS  ES T ++
Sbjct: 2594 SVPGPRQMKENQVPTKGTWRKIKESEISPTNTVSQTTSSGAASGAESKTLIY 2645


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,663,749
Number of Sequences: 219361
Number of extensions: 775851
Number of successful extensions: 2641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2635
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)