ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet23f05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence Length = 130987 Score = 327 bits (165), Expect = 2e-86 Identities = 240/265 (90%) Strand = Plus / Plus Query: 201 ggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatcccgctcga 260 ||||||||||||||| ||| |||||||| | ||||||||||| |||||||||||| || Sbjct: 30000 ggcggccgagatccgagagaccgcgatccgggccgacccgcgcagcatcatcccgctgga 30059 Query: 261 cgagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgccttcga 320 ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| Sbjct: 30060 cgagttcggcttctcccactcgggcgtgctggagctcaacgtctccggcatcgccttcga 30119 Query: 321 cccgccggcctcccaggacctcgacctctcccagttcggcttcttcctctccaccctcga 380 ||||||||||||| ||| || |||||||||||| ||||||||||||||||||| ||||| Sbjct: 30120 cccgccggcctccgcggagctggacctctcccagctcggcttcttcctctccacgctcga 30179 Query: 381 cgcctgggtccacgtcctccgccagctccaggacctcgaggtcacctgcgcgctccagtc 440 ||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 30180 cgcctgggttcacgtcctccgccaactccaggaccttgacgtcacctgcgcgctccagtc 30239 Query: 441 cgacctcgtcaagctcgcctactcc 465 ||| |||||||||||||||| |||| Sbjct: 30240 cgagctcgtcaagctcgcctcctcc 30264
>ref|XM_493716.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1712 Score = 315 bits (159), Expect = 7e-83 Identities = 243/271 (89%) Strand = Plus / Plus Query: 195 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 254 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 213 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 272 Query: 255 gctcgacgagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 314 ||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 273 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 332 Query: 315 cttcgacccgccggcctcccaggacctcgacctctcccagttcggcttcttcctctccac 374 ||||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 333 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 392 Query: 375 cctcgacgcctgggtccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 434 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 393 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 452 Query: 435 ccagtccgacctcgtcaagctcgcctactcc 465 |||| |||||||||||||||||||||||||| Sbjct: 453 ccaggccgacctcgtcaagctcgcctactcc 483
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 315 bits (159), Expect = 7e-83 Identities = 243/271 (89%) Strand = Plus / Minus Query: 195 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 254 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 48972 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 48913 Query: 255 gctcgacgagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 314 ||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 48912 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 48853 Query: 315 cttcgacccgccggcctcccaggacctcgacctctcccagttcggcttcttcctctccac 374 ||||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 48852 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 48793 Query: 375 cctcgacgcctgggtccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 434 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 48792 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 48733 Query: 435 ccagtccgacctcgtcaagctcgcctactcc 465 |||| |||||||||||||||||||||||||| Sbjct: 48732 ccaggccgacctcgtcaagctcgcctactcc 48702
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 315 bits (159), Expect = 7e-83 Identities = 243/271 (89%) Strand = Plus / Minus Query: 195 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 254 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 1728757 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 1728698 Query: 255 gctcgacgagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 314 ||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 1728697 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 1728638 Query: 315 cttcgacccgccggcctcccaggacctcgacctctcccagttcggcttcttcctctccac 374 ||||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 1728637 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 1728578 Query: 375 cctcgacgcctgggtccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 434 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 1728577 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 1728518 Query: 435 ccagtccgacctcgtcaagctcgcctactcc 465 |||| |||||||||||||||||||||||||| Sbjct: 1728517 ccaggccgacctcgtcaagctcgcctactcc 1728487
>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0493C11 Length = 143113 Score = 315 bits (159), Expect = 7e-83 Identities = 243/271 (89%) Strand = Plus / Minus Query: 195 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 254 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 131928 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 131869 Query: 255 gctcgacgagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 314 ||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 131868 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 131809 Query: 315 cttcgacccgccggcctcccaggacctcgacctctcccagttcggcttcttcctctccac 374 ||||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 131808 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 131749 Query: 375 cctcgacgcctgggtccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 434 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 131748 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 131689 Query: 435 ccagtccgacctcgtcaagctcgcctactcc 465 |||| |||||||||||||||||||||||||| Sbjct: 131688 ccaggccgacctcgtcaagctcgcctactcc 131658
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 315 bits (159), Expect = 7e-83 Identities = 243/271 (89%) Strand = Plus / Minus Query: 195 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 254 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 53906 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 53847 Query: 255 gctcgacgagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 314 ||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 53846 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 53787 Query: 315 cttcgacccgccggcctcccaggacctcgacctctcccagttcggcttcttcctctccac 374 ||||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 53786 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 53727 Query: 375 cctcgacgcctgggtccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 434 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 53726 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 53667 Query: 435 ccagtccgacctcgtcaagctcgcctactcc 465 |||| |||||||||||||||||||||||||| Sbjct: 53666 ccaggccgacctcgtcaagctcgcctactcc 53636
>dbj|AK105429.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E04, full insert sequence Length = 1767 Score = 315 bits (159), Expect = 7e-83 Identities = 243/271 (89%) Strand = Plus / Plus Query: 195 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 254 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 138 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 197 Query: 255 gctcgacgagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 314 ||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 198 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 257 Query: 315 cttcgacccgccggcctcccaggacctcgacctctcccagttcggcttcttcctctccac 374 ||||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 258 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 317 Query: 375 cctcgacgcctgggtccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 434 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 318 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 377 Query: 435 ccagtccgacctcgtcaagctcgcctactcc 465 |||| |||||||||||||||||||||||||| Sbjct: 378 ccaggccgacctcgtcaagctcgcctactcc 408
>dbj|AK100206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041H11, full insert sequence Length = 1712 Score = 315 bits (159), Expect = 7e-83 Identities = 243/271 (89%) Strand = Plus / Plus Query: 195 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 254 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 213 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 272 Query: 255 gctcgacgagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 314 ||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 273 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 332 Query: 315 cttcgacccgccggcctcccaggacctcgacctctcccagttcggcttcttcctctccac 374 ||||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 333 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 392 Query: 375 cctcgacgcctgggtccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 434 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 393 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 452 Query: 435 ccagtccgacctcgtcaagctcgcctactcc 465 |||| |||||||||||||||||||||||||| Sbjct: 453 ccaggccgacctcgtcaagctcgcctactcc 483
>dbj|AK072859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143I01, full insert sequence Length = 1845 Score = 315 bits (159), Expect = 7e-83 Identities = 243/271 (89%) Strand = Plus / Plus Query: 195 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 254 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 233 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 292 Query: 255 gctcgacgagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 314 ||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 293 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 352 Query: 315 cttcgacccgccggcctcccaggacctcgacctctcccagttcggcttcttcctctccac 374 ||||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 353 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 412 Query: 375 cctcgacgcctgggtccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 434 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 413 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 472 Query: 435 ccagtccgacctcgtcaagctcgcctactcc 465 |||| |||||||||||||||||||||||||| Sbjct: 473 ccaggccgacctcgtcaagctcgcctactcc 503
>emb|X96856.1|PPPPEG1 P.persica ppEG1 gene Length = 5445 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 245 ccatcatcccgctcgacgagttcggcttctcccgccacggcgtgctcgagctcaacgtct 304 |||||||||| ||||||||||||||||| ||| | | ||| |||||||||||||||| Sbjct: 5299 ccatcatccccttcgacgagttcggcttcacccacaaaggccgcctcgagctcaacgtct 5358 Query: 305 cc 306 || Sbjct: 5359 cc 5360
>ref|NM_197227.1| Oryza sativa (japonica cultivar-group) putative hypersensitivity-related (hsr)protein (OSJNBb0073N24.11), mRNA Length = 1662 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 242 gcaccatcatcccgctcgacga 263 |||||||||||||||||||||| Sbjct: 683 gcaccatcatcccgctcgacga 704
>gb|AC006712.2| Caenorhabditis elegans cosmid Y119C1B, complete sequence Length = 56772 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 389 tccacgtcctccgccagctcca 410 |||||||||||||||||||||| Sbjct: 49874 tccacgtcctccgccagctcca 49895
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 242 gcaccatcatcccgctcgacga 263 |||||||||||||||||||||| Sbjct: 58863 gcaccatcatcccgctcgacga 58884
>ref|NM_001026549.1| Caenorhabditis elegans Y119C1B.11 (Y119C1B.11) mRNA, complete cds Length = 240 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 389 tccacgtcctccgccagctcca 410 |||||||||||||||||||||| Sbjct: 162 tccacgtcctccgccagctcca 141
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 242 gcaccatcatcccgctcgacga 263 |||||||||||||||||||||| Sbjct: 18697585 gcaccatcatcccgctcgacga 18697606
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 242 gcaccatcatcccgctcgacga 263 |||||||||||||||||||||| Sbjct: 18708438 gcaccatcatcccgctcgacga 18708459
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 252 cccgctcgacgagttcggcttctcc 276 |||||||||||||||| |||||||| Sbjct: 445073 cccgctcgacgagttccgcttctcc 445049
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcgacgagttcggcttctccc 277 ||||||||||||||||||||| Sbjct: 2481079 tcgacgagttcggcttctccc 2481059
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 tcgacgagttcggcttctccc 277 ||||||||||||||||||||| Sbjct: 1901740 tcgacgagttcggcttctccc 1901760
>gb|DQ418486.2| Burkholderia pseudomallei isolate 204 putative membrane protein, MrgR (mrgR), MrgS (mrgS), putative signal transduction repressor protein, hypothetical arginine/serine rich protein, putative membrane transport-associated protein, and putative lipase genes, complete cds Length = 10026 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 tcgacgagttcggcttctccc 277 ||||||||||||||||||||| Sbjct: 7776 tcgacgagttcggcttctccc 7796
>emb|AL032656.3|CEY106G6E Caenorhabditis elegans YAC Y106G6E, complete sequence Length = 37704 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cacgtcctccgccagctcca 410 |||||||||||||||||||| Sbjct: 4043 cacgtcctccgccagctcca 4024
>emb|AL032645.1|CEY67A6A Caenorhabditis elegans YAC Y67A6A, complete sequence Length = 27185 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 cacgtcctccgccagctcca 410 |||||||||||||||||||| Sbjct: 7949 cacgtcctccgccagctcca 7968
>emb|CR599132.1| full-length cDNA clone CS0DL007YP19 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1771 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 gcttctcccgccacggcgtgctcg 292 ||||||||||||||||||| |||| Sbjct: 49 gcttctcccgccacggcgtcctcg 26
>gb|AC034200.6|AC034200 Homo sapiens chromosome 5 clone CTB-135C10, complete sequence Length = 143084 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 gcttctcccgccacggcgtgctcg 292 ||||||||||||||||||| |||| Sbjct: 108937 gcttctcccgccacggcgtcctcg 108960
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 cgcgctccagtccgacctcg 448 |||||||||||||||||||| Sbjct: 4674560 cgcgctccagtccgacctcg 4674541
>gb|AC091393.3| Homo sapiens chromosome 5 clone CTC-571O20, complete sequence Length = 217781 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 gcttctcccgccacggcgtgctcg 292 ||||||||||||||||||| |||| Sbjct: 77484 gcttctcccgccacggcgtcctcg 77507
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gcgacccgcgcaccatcatc 252 |||||||||||||||||||| Sbjct: 2622608 gcgacccgcgcaccatcatc 2622627
>emb|AL117204.1|CEY116A8C Caenorhabditis elegans YAC Y116A8C, complete sequence Length = 260341 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cacgtcctccgccagctcca 410 |||||||||||||||||||| Sbjct: 165592 cacgtcctccgccagctcca 165573 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 cacgtcctccgccagctcca 410 |||||||||||||||||||| Sbjct: 163390 cacgtcctccgccagctcca 163409
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cgacccgcgcaccatcatcccgctcgac 261 ||||||||||||||||| ||||||||| Sbjct: 2436782 cgacccgcgcaccatcaagccgctcgac 2436755
>gb|AC138151.3| Mus musculus BAC clone RP24-294E11 from 7, complete sequence Length = 203368 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tcctccgccagctccaggac 414 |||||||||||||||||||| Sbjct: 53438 tcctccgccagctccaggac 53419
>dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:LjT34D11, TM0119, complete sequence Length = 109743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 cttcctctccaccctcgacg 382 |||||||||||||||||||| Sbjct: 88170 cttcctctccaccctcgacg 88151 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,261,014 Number of Sequences: 3902068 Number of extensions: 2261014 Number of successful extensions: 55694 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54755 Number of HSP's gapped (non-prelim): 938 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
