ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet23d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPW_HUMAN (Q8N729) Neuropeptide W precursor (Preproprotein L8) (... 29 5.7
2US29_HCMVA (P09705) Hypothetical protein HHRF4 29 7.5
3EFTU_PEA (O24310) Elongation factor Tu, chloroplast precursor (E... 29 7.5
4CRVP_PSEPO (Q8AVA3) Pseudecin precursor 28 9.7
5CRVP_PSEAU (Q8AVA4) Pseudechetoxin precursor (PsTx) 28 9.7
6GLPK_HALSA (Q9HNS5) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol ... 28 9.7
7GLPK_HALMA (Q5V4I4) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol ... 28 9.7

>NPW_HUMAN (Q8N729) Neuropeptide W precursor (Preproprotein L8) (hPPL8)|
           [Contains: Neuropeptide W-23 (NPW23) (hL8); Neuropeptide
           W-30 (NPW30) (hL8C)]
          Length = 165

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 333 WRSGRSRGTAGGPLRGARHPQLLRAALEKQRLAWIGTGR 217
           W + R    AG P+R  R P+    ALE + L + G G+
Sbjct: 99  WETRRRSSQAGIPVRAPRSPRAPEPALEPESLDFSGAGQ 137



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>US29_HCMVA (P09705) Hypothetical protein HHRF4|
          Length = 462

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 119 SPVRKVQSAVIYPRGACCWVGGGGSVAVVQPEG 217
           +PVR+    V Y  G CC VGGG    V+   G
Sbjct: 133 TPVRRPMGEVAY-YGGCCMVGGGNRAYVILVSG 164



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>EFTU_PEA (O24310) Elongation factor Tu, chloroplast precursor (EF-Tu)|
          Length = 488

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 416 QIRRRPSRTVLTVRAARTFHLRGRRH-QLGVLEDLEERQVVLSAALATRSCC 264
           Q   RPS +  TVRAAR    R + H  +G +  ++  +  L+AAL     C
Sbjct: 66  QRTNRPSSSPFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALAC 117



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>CRVP_PSEPO (Q8AVA3) Pseudecin precursor|
          Length = 238

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 456 CQYKQSGHVEAMMANPEEAF*DCADCKS 373
           CQY  +G++   +A P ++   CADC S
Sbjct: 162 CQYCPAGNIRGSIATPYKSGPPCADCPS 189



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>CRVP_PSEAU (Q8AVA4) Pseudechetoxin precursor (PsTx)|
          Length = 238

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 456 CQYKQSGHVEAMMANPEEAF*DCADCKS 373
           CQY  +G++   +A P ++   CADC S
Sbjct: 162 CQYCPAGNIRGSIATPYKSGPPCADCPS 189



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>GLPK_HALSA (Q9HNS5) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol|
           3-phosphotransferase) (Glycerokinase) (GK)
          Length = 510

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 324 GRSRGTAGGPLRGARHPQLLRAALE 250
           GR+RGT  G  RG R   ++RA LE
Sbjct: 368 GRARGTLVGMTRGTRKAHIVRATLE 392



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>GLPK_HALMA (Q5V4I4) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol|
           3-phosphotransferase) (Glycerokinase) (GK)
          Length = 510

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 324 GRSRGTAGGPLRGARHPQLLRAALE 250
           GR+RGT  G  RG R   ++RA LE
Sbjct: 368 GRARGTIVGMTRGTRKEHIVRATLE 392


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,262,782
Number of Sequences: 219361
Number of extensions: 905414
Number of successful extensions: 2633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2631
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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