>SHC1_HUMAN (P29353) SHC transforming protein 1 (SH2 domain protein C1) (Src|
           homology 2 domain-containing transforming protein C1)
          Length = 583

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = -2

Query: 91  AAGSTPGGALPSIPLSFSLATILPPEPND 5
           A+GSTP   LPS P + SL  ILPP P D
Sbjct: 25  ASGSTPPEELPS-PSASSLGPILPPLPGD 52

>SHC1_MOUSE (P98083) SHC transforming protein 1 (SH2 domain protein C1) (Src|
           homology 2 domain-containing transforming protein C1)
          Length = 579

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = -2

Query: 91  AAGSTPGGALPSIPLSFSLATILPPEPND 5
           A+GSTP   LPS P + SL  ILPP P D
Sbjct: 25  ASGSTPPEELPS-PSASSLGPILPPLPGD 52

>APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRNA|
           intron-encoded homing endonuclease 1)
          Length = 222

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +3

Query: 42  KLKGIDGRAPPGVEPAA 92
           KLKGI G AP GVEPAA
Sbjct: 206 KLKGIGGGAPQGVEPAA 222

>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor|
            (LRP)
          Length = 4753

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -1

Query: 203  CNCKGHAPPPIESRKSSQSVNPCYVWTW*VSPCWVKLSRRLHAWWCPSVNSFKFQPCDHT 24
            C+C       I  +KS  +VN CY     +S C  K   ++ ++ C  V+ ++    DH+
Sbjct: 3248 CDCFEGFAIDISDQKSCHNVNECYEG---ISGCSQKCDDKIGSYKCGCVDGYQLSSDDHS 3304

Query: 23   PPGTQ 9
               T+
Sbjct: 3305 CKRTE 3309

>MPD2_YEAST (Q99316) Protein disulfide isomerase MPD2 precursor (EC 5.3.4.1)|
          Length = 277

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 135 LCLDLVSFPVLGQIKPQAPRLVVP 64
           LC DL  FP++  +KP+   LV+P
Sbjct: 98  LCTDLPGFPIIELVKPRTKPLVLP 121

>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1470

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 9   LGSGGSMVARLKLKGIDGRAPPGVEPAA*FDPTRGNLPGP 128
           L SG S+   L  +G+D R PPG  P     P   ++PGP
Sbjct: 871 LSSGSSISEVLSAQGVDLRGPPG--PPGPRGPPGPSIPGP 908

>UBP44_HUMAN (Q9H0E7) Ubiquitin carboxyl-terminal hydrolase 44 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 44)
           (Ubiquitin-specific-processing protease 44)
           (Deubiquitinating enzyme 44)
          Length = 712

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -3

Query: 306 ARWG*RREGFGAWFRVWWEATRVGEEEQERRGDALQLQRPCTTTHRIKKELSVCQSLLCL 127
           A W  RR   G  FR W+E + +G ++QE        Q        +KK     +  +  
Sbjct: 149 ALWHRRRILMGKIFRTWFEQSPIGRKKQEE-----PFQEKIVVKREVKKRRQELEYQVKA 203

Query: 126 DLVSFP 109
           +L S P
Sbjct: 204 ELESMP 209


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,294,901
Number of Sequences: 219361
Number of extensions: 1058017
Number of successful extensions: 2676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2675
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)