ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet23d02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187760.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1575 Score = 178 bits (90), Expect = 1e-41 Identities = 165/190 (86%) Strand = Plus / Plus Query: 252 gctgcgtggccgcggcgtacgcctacgccgtgtcgcggccgcggcccgtgtacctggtgg 311 |||||| ||| ||||||||||| |||||| |||||||||||||||| ||||||||||||| Sbjct: 209 gctgcgcggcggcggcgtacgcgtacgccatgtcgcggccgcggccggtgtacctggtgg 268 Query: 312 acatggccgggtacaagcccgggccggcgcacgaggcgacgcgcgcgcaggccatccgcc 371 || | |||||||||||||| | | || ||||||||||||||||||| || ||||||||| Sbjct: 269 acctcgccgggtacaagccggcggcgtcgcacgaggcgacgcgcgccgagtccatccgcc 328 Query: 372 agttcgggctcgccggcgggttcgacgacgagagcatgtcgttccagaagcggatgatgg 431 |||||||||||| || | ||| || |||||||||| |||||||| ||||||||||| Sbjct: 329 ggttcgggctcgcgggggacttcaccggcgagagcatggcgttccagcggcggatgatgg 388 Query: 432 agcggtcggg 441 |||||||||| Sbjct: 389 agcggtcggg 398
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 178 bits (90), Expect = 1e-41 Identities = 165/190 (86%) Strand = Plus / Plus Query: 252 gctgcgtggccgcggcgtacgcctacgccgtgtcgcggccgcggcccgtgtacctggtgg 311 |||||| ||| ||||||||||| |||||| |||||||||||||||| ||||||||||||| Sbjct: 3384623 gctgcgcggcggcggcgtacgcgtacgccatgtcgcggccgcggccggtgtacctggtgg 3384682 Query: 312 acatggccgggtacaagcccgggccggcgcacgaggcgacgcgcgcgcaggccatccgcc 371 || | |||||||||||||| | | || ||||||||||||||||||| || ||||||||| Sbjct: 3384683 acctcgccgggtacaagccggcggcgtcgcacgaggcgacgcgcgccgagtccatccgcc 3384742 Query: 372 agttcgggctcgccggcgggttcgacgacgagagcatgtcgttccagaagcggatgatgg 431 |||||||||||| || | ||| || |||||||||| |||||||| ||||||||||| Sbjct: 3384743 ggttcgggctcgcgggggacttcaccggcgagagcatggcgttccagcggcggatgatgg 3384802 Query: 432 agcggtcggg 441 |||||||||| Sbjct: 3384803 agcggtcggg 3384812 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 176 tgggcggcgcggcggtgctgctctcgaaccgccgc 210 ||||||||||||||| ||||||||||||||||||| Sbjct: 7657398 tgggcggcgcggcggcgctgctctcgaaccgccgc 7657364
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 178 bits (90), Expect = 1e-41 Identities = 165/190 (86%) Strand = Plus / Minus Query: 252 gctgcgtggccgcggcgtacgcctacgccgtgtcgcggccgcggcccgtgtacctggtgg 311 |||||| ||| ||||||||||| |||||| |||||||||||||||| ||||||||||||| Sbjct: 44591 gctgcgcggcggcggcgtacgcgtacgccatgtcgcggccgcggccggtgtacctggtgg 44532 Query: 312 acatggccgggtacaagcccgggccggcgcacgaggcgacgcgcgcgcaggccatccgcc 371 || | |||||||||||||| | | || ||||||||||||||||||| || ||||||||| Sbjct: 44531 acctcgccgggtacaagccggcggcgtcgcacgaggcgacgcgcgccgagtccatccgcc 44472 Query: 372 agttcgggctcgccggcgggttcgacgacgagagcatgtcgttccagaagcggatgatgg 431 |||||||||||| || | ||| || |||||||||| |||||||| ||||||||||| Sbjct: 44471 ggttcgggctcgcgggggacttcaccggcgagagcatggcgttccagcggcggatgatgg 44412 Query: 432 agcggtcggg 441 |||||||||| Sbjct: 44411 agcggtcggg 44402
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 178 bits (90), Expect = 1e-41 Identities = 165/190 (86%) Strand = Plus / Plus Query: 252 gctgcgtggccgcggcgtacgcctacgccgtgtcgcggccgcggcccgtgtacctggtgg 311 |||||| ||| ||||||||||| |||||| |||||||||||||||| ||||||||||||| Sbjct: 3384734 gctgcgcggcggcggcgtacgcgtacgccatgtcgcggccgcggccggtgtacctggtgg 3384793 Query: 312 acatggccgggtacaagcccgggccggcgcacgaggcgacgcgcgcgcaggccatccgcc 371 || | |||||||||||||| | | || ||||||||||||||||||| || ||||||||| Sbjct: 3384794 acctcgccgggtacaagccggcggcgtcgcacgaggcgacgcgcgccgagtccatccgcc 3384853 Query: 372 agttcgggctcgccggcgggttcgacgacgagagcatgtcgttccagaagcggatgatgg 431 |||||||||||| || | ||| || |||||||||| |||||||| ||||||||||| Sbjct: 3384854 ggttcgggctcgcgggggacttcaccggcgagagcatggcgttccagcggcggatgatgg 3384913 Query: 432 agcggtcggg 441 |||||||||| Sbjct: 3384914 agcggtcggg 3384923 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 176 tgggcggcgcggcggtgctgctctcgaaccgccgc 210 ||||||||||||||| ||||||||||||||||||| Sbjct: 7655233 tgggcggcgcggcggcgctgctctcgaaccgccgc 7655199
>ref|NM_196495.1| Oryza sativa (japonica cultivar-group) putative beta-ketoacyl-CoA synthase (OSJNBa0032I20.8), mRNA Length = 1572 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 400 cgagagcatgtcgttccagaagcggatgatggagcggtcggg 441 |||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 402 cgagagcatggcgttccagaagcggatgctggagcggtcggg 443
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 400 cgagagcatgtcgttccagaagcggatgatggagcggtcggg 441 |||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 14051098 cgagagcatggcgttccagaagcggatgctggagcggtcggg 14051057 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 176 tgggcggcgcggcggtgctgctctcgaaccgc 207 ||||||||||||||| |||||| |||| |||| Sbjct: 3639578 tgggcggcgcggcggcgctgctgtcgagccgc 3639547
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 400 cgagagcatgtcgttccagaagcggatgatggagcggtcggg 441 |||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 67227 cgagagcatggcgttccagaagcggatgctggagcggtcggg 67186
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 400 cgagagcatgtcgttccagaagcggatgatggagcggtcggg 441 |||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 14059340 cgagagcatggcgttccagaagcggatgctggagcggtcggg 14059299 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 176 tgggcggcgcggcggtgctgctctcgaaccgc 207 ||||||||||||||| |||||| |||| |||| Sbjct: 3639499 tgggcggcgcggcggcgctgctgtcgagccgc 3639468
>gb|AY108266.1| Zea mays PCO146059 mRNA sequence Length = 561 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 397 cgacgagagcatgtcgttccagaagcggatgatggagcggtcggg 441 ||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct: 415 cgacgagagcatggcgttccagaagcggatgctggaacggtcggg 459
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 176 tgggcggcgcggcggtgctgctctcgaaccgccgc 210 ||||||||||||||| ||||||||||||||||||| Sbjct: 57892 tgggcggcgcggcggcgctgctctcgaaccgccgc 57926
>dbj|AK119222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E03, full insert sequence Length = 2098 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 176 tgggcggcgcggcggtgctgctctcgaaccgccgc 210 ||||||||||||||| ||||||||||||||||||| Sbjct: 1042 tgggcggcgcggcggcgctgctctcgaaccgccgc 1076
>dbj|AK112059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A11, full insert sequence Length = 2025 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 176 tgggcggcgcggcggtgctgctctcgaaccgccgc 210 ||||||||| ||||| ||||||||||||||||||| Sbjct: 1042 tgggcggcgtggcggcgctgctctcgaaccgccgc 1076
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 178 ggcggcgcggcggtgctgctctcgaaccgc 207 ||||||||||||||||||||||| |||||| Sbjct: 139945 ggcggcgcggcggtgctgctctccaaccgc 139916
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 178 ggcggcgcggcggtgctgctctcgaaccgc 207 ||||||||||||||||||||||| |||||| Sbjct: 28059780 ggcggcgcggcggtgctgctctccaaccgc 28059751
>dbj|AK119596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D11, full insert sequence Length = 2378 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 178 ggcggcgcggcggtgctgctctcgaaccgc 207 ||||||||||||||||||||||| |||||| Sbjct: 1130 ggcggcgcggcggtgctgctctccaaccgc 1159
>dbj|AK101103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025C07, full insert sequence Length = 2356 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 178 ggcggcgcggcggtgctgctctcgaaccgc 207 ||||||||||||||||||||||| |||||| Sbjct: 1131 ggcggcgcggcggtgctgctctccaaccgc 1160
>ref|XM_480299.1| Oryza sativa (japonica cultivar-group), mRNA Length = 180 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 gcgtccttgtgggcggcgcggc 188 |||||||||||||||||||||| Sbjct: 89 gcgtccttgtgggcggcgcggc 68
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 gcgtccttgtgggcggcgcggc 188 |||||||||||||||||||||| Sbjct: 4201372 gcgtccttgtgggcggcgcggc 4201393
>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1590_E05 Length = 148205 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 gcgtccttgtgggcggcgcggc 188 |||||||||||||||||||||| Sbjct: 100995 gcgtccttgtgggcggcgcggc 101016
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 acgcggccgtgctggtggccg 242 ||||||||||||||||||||| Sbjct: 1849896 acgcggccgtgctggtggccg 1849916
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tacgccgtgtcgcggccgcggcccg 299 ||||| ||||||||||||||||||| Sbjct: 112979 tacgcggtgtcgcggccgcggcccg 112955
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 acgcggccgtgctggtggccg 242 ||||||||||||||||||||| Sbjct: 127732 acgcggccgtgctggtggccg 127752
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tacgccgtgtcgcggccgcggcccg 299 ||||| ||||||||||||||||||| Sbjct: 1508574 tacgcggtgtcgcggccgcggcccg 1508550
>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 6/14 Length = 300050 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 acgcggccgtgctggtggccg 242 ||||||||||||||||||||| Sbjct: 230354 acgcggccgtgctggtggccg 230374
>gb|AF512431.1| Saccharothrix mutabilis subsp. capreolus nonribosomal peptide synthetase gene cluster, partial sequence Length = 28890 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 cgccggcgggttcgacgacga 402 ||||||||||||||||||||| Sbjct: 4597 cgccggcgggttcgacgacga 4617
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tacgccgtgtcgcggccgcggcccg 299 ||||| ||||||||||||||||||| Sbjct: 1092486 tacgcggtgtcgcggccgcggcccg 1092462
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 tacgccgtgtcgcggccgcggcccg 299 ||||| ||||||||||||||||||| Sbjct: 1528007 tacgcggtgtcgcggccgcggcccg 1528031
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 cgacgacgagagcatgtcgtt 414 ||||||||||||||||||||| Sbjct: 1938476 cgacgacgagagcatgtcgtt 1938456
>ref|NM_194947.1| Oryza sativa (japonica cultivar-group) putative senescence-associated protein 15 (OSJNBa0036D19.6), mRNA Length = 1797 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 176 tgggcggcgcggcggtgctgctctcgaaccgc 207 ||||||||||||||| |||||| |||| |||| Sbjct: 902 tgggcggcgcggcggcgctgctgtcgagccgc 933
>gb|AF311437.2|AH010657S2 Comamonas testosteroni plasmid pTSA incP1beta region, partial sequence and transposon Tntsa, complete sequence Length = 38756 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cgcggccgtgctggtggccg 242 |||||||||||||||||||| Sbjct: 31153 cgcggccgtgctggtggccg 31172 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 cgcggccgtgctggtggccg 242 |||||||||||||||||||| Sbjct: 23978 cgcggccgtgctggtggccg 23959
>ref|XM_605440.2| PREDICTED: Bos taurus similar to neuronal PAS domain protein 3 isoform 1 (LOC527053), mRNA Length = 3349 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gcggccgtgctggtggccgc 243 |||||||||||||||||||| Sbjct: 1742 gcggccgtgctggtggccgc 1723
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ggccgcgtgcgcgggctgcg 257 |||||||||||||||||||| Sbjct: 4003067 ggccgcgtgcgcgggctgcg 4003086
>gb|AE005805.1| Caulobacter crescentus CB15 section 131 of 359 of the complete genome Length = 11621 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 cggcgcacgaggcgacgcgcgcgc 359 ||||||||||||| |||||||||| Sbjct: 7992 cggcgcacgaggccacgcgcgcgc 7969
>gb|AE011984.1| Xanthomonas axonopodis pv. citri str. 306, section 362 of 469 of the complete genome Length = 13510 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ggccgcgtgcgcgggctgcg 257 |||||||||||||||||||| Sbjct: 2955 ggccgcgtgcgcgggctgcg 2974
>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence Length = 144359 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 176 tgggcggcgcggcggtgctgctctcgaaccgc 207 ||||||||||||||| |||||| |||| |||| Sbjct: 72419 tgggcggcgcggcggcgctgctgtcgagccgc 72388
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 acgtgcgagcgagcgagcgt 170 |||||||||||||||||||| Sbjct: 18070882 acgtgcgagcgagcgagcgt 18070901
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gcggcgcggcggtgctgctc 198 |||||||||||||||||||| Sbjct: 4878078 gcggcgcggcggtgctgctc 4878097
>gb|AF247362.1|AF247362 Petromyzon marinus Spi transcription factor mRNA, complete cds Length = 1272 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gtacgtgcgagcgagcgagc 168 |||||||||||||||||||| Sbjct: 66 gtacgtgcgagcgagcgagc 47
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gcggcgcggcggtgctgctc 198 |||||||||||||||||||| Sbjct: 6769161 gcggcgcggcggtgctgctc 6769180
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 acgtgcgagcgagcgagcgt 170 |||||||||||||||||||| Sbjct: 132476 acgtgcgagcgagcgagcgt 132495
>gb|AE005006.1| Halobacterium sp. NRC-1 section 37 of 170 of the complete genome Length = 13283 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 cgtgctggtggccgcgtgcgcggg 252 |||||||||||||||| ||||||| Sbjct: 4931 cgtgctggtggccgcgggcgcggg 4908
>ref|XM_551134.1| Anopheles gambiae str. PEST ENSANGP00000028284 (ENSANGG00000019667), partial mRNA Length = 9543 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ggcgcacgaggcgacgcgcg 356 |||||||||||||||||||| Sbjct: 4212 ggcgcacgaggcgacgcgcg 4231
>ref|XM_321424.2| Anopheles gambiae str. PEST ENSANGP00000022156 (ENSANGG00000019667), partial mRNA Length = 13383 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ggcgcacgaggcgacgcgcg 356 |||||||||||||||||||| Sbjct: 8043 ggcgcacgaggcgacgcgcg 8062
>dbj|AK110473.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-H04, full insert sequence Length = 2644 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 tgtcgcggccgcggcccgtg 301 |||||||||||||||||||| Sbjct: 1187 tgtcgcggccgcggcccgtg 1206
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cggccgtgctggtggccgcg 244 |||||||||||||||||||| Sbjct: 3609783 cggccgtgctggtggccgcg 3609764
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cgtgtcgcggccgcggcccg 299 |||||||||||||||||||| Sbjct: 152999 cgtgtcgcggccgcggcccg 153018
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 gctggtggccgcgtgcgcgg 251 |||||||||||||||||||| Sbjct: 2540061 gctggtggccgcgtgcgcgg 2540042
>emb|AJ704074.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase, clone D-F3 Length = 1098 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ccagttcgggctcgccggcg 389 |||||||||||||||||||| Sbjct: 802 ccagttcgggctcgccggcg 783 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,086,980 Number of Sequences: 3902068 Number of extensions: 2086980 Number of successful extensions: 51313 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48663 Number of HSP's gapped (non-prelim): 2646 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
