ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet23a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FOSB_HUMAN (P53539) Protein fosB (G0/G1 switch regulatory protei... 30 3.5
2FOSB_CANFA (Q9TUB3) Protein fosB 30 3.5
3DPEP2_HUMAN (Q9H4A9) Dipeptidase 2 precursor (EC 3.4.13.19) 29 5.9
4CI041_RAT (Q5BJZ6) Protein C9orf41 homolog 29 5.9
5PROQ_SHIFL (Q83RJ2) ProP effector 28 7.7
6PROQ_ECOLI (P45577) ProP effector 28 7.7
7PROQ_ECO57 (Q8XCM4) ProP effector 28 7.7
8COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor 28 7.7
9BAB1_DROME (Q9W0K7) Protein bric-a-brac 1 28 7.7
10FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 3... 28 7.7

>FOSB_HUMAN (P53539) Protein fosB (G0/G1 switch regulatory protein 3)|
          Length = 338

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 414 GGSGTSGWRIGPGPARPRTA 355
           GG  TSG   GPGPARP  A
Sbjct: 121 GGPSTSGTTSGPGPARPARA 140



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>FOSB_CANFA (Q9TUB3) Protein fosB|
          Length = 338

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 414 GGSGTSGWRIGPGPARPRTA 355
           GG  TSG   GPGPARP  A
Sbjct: 121 GGPSTSGTTSGPGPARPARA 140



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>DPEP2_HUMAN (Q9H4A9) Dipeptidase 2 precursor (EC 3.4.13.19)|
          Length = 486

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 111 ARRATSVNQTPNFLSRKPPRSGTNALLKKARRRNRNTDLLGSXXXXXXGYVVLYNVSVGA 290
           ARRA  V+Q P   S    R   N+       RN   D+L        G VV+ ++S+G 
Sbjct: 267 ARRALEVSQAPVIFSHSAARGVCNS------ARNVPDDIL--QLLKKNGGVVMVSLSMGV 318

Query: 291 TEAQPN-DVSGVVDVLD 338
            +  P+ +VS V D  D
Sbjct: 319 IQCNPSANVSTVADHFD 335



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>CI041_RAT (Q5BJZ6) Protein C9orf41 homolog|
          Length = 400

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 56  GRLATCSPASPPVAGAYRREEGDERQ 133
           GRL + +PA PPV G    EE  ER+
Sbjct: 30  GRLGSAAPAGPPVRGTAEDEERLERE 55



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>PROQ_SHIFL (Q83RJ2) ProP effector|
          Length = 232

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 107 RREEGDERQPDAQLPLQKA 163
           RR+EG ER+P AQ P++KA
Sbjct: 147 RRKEGAERKPRAQKPVEKA 165



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>PROQ_ECOLI (P45577) ProP effector|
          Length = 232

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 107 RREEGDERQPDAQLPLQKA 163
           RR+EG ER+P AQ P++KA
Sbjct: 147 RRKEGAERKPRAQKPVEKA 165



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>PROQ_ECO57 (Q8XCM4) ProP effector|
          Length = 232

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 107 RREEGDERQPDAQLPLQKA 163
           RR+EG ER+P AQ P++KA
Sbjct: 147 RRKEGAERKPRAQKPVEKA 165



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>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 365 GRAGPGPMRQPDVPEPPGQRHHGR 436
           G   PGP  QP +P PPG    G+
Sbjct: 84  GTGSPGPQGQPGLPGPPGPSATGK 107



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>BAB1_DROME (Q9W0K7) Protein bric-a-brac 1|
          Length = 977

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 374 GPGPMRQPDVPEPPGQRHHG 433
           GPGP  +P +P PP   H G
Sbjct: 450 GPGPSAEPRLPPPPPHHHGG 469



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>FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 34-like)|
          Length = 646

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 356 AVRGRAGPGPMRQPDVPEPPGQRHHG 433
           + RGR G  P R P +P PPG R  G
Sbjct: 604 STRGRGGESPPRPP-LPSPPGSRGSG 628


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,015,372
Number of Sequences: 219361
Number of extensions: 778161
Number of successful extensions: 3781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3777
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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