>RPT3_ARATH (Q9FMF5) Root phototropism protein 3 (Non-phototropic hypocotyl|
           protein 3)
          Length = 745

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 23/42 (54%), Positives = 36/42 (85%)
 Frame = +1

Query: 112 KGQAWFCTTGLPSDVVIEVGDMTFHLHKFPLMSKSKKIHDLI 237
           +GQ+WF  T +PSD+++++GDM FHLHK+PL+S+S K++ LI
Sbjct: 41  RGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLI 82

>NPH3_ORYSA (Q5KS50) Coleoptile phototropism protein 1 (Non-phototropic|
           hypocotyl 3-like protein) (NPH3-like protein)
          Length = 762

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 19/53 (35%), Positives = 39/53 (73%)
 Frame = +1

Query: 112 KGQAWFCTTGLPSDVVIEVGDMTFHLHKFPLMSKSKKIHDLIMNKESSLARQA 270
           + ++W+  + +PSD++++VGD+ F+LHK+P++S+S ++   +   ESS A +A
Sbjct: 39  RDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVY--ESSAADEA 89

>RPT2_ARATH (Q682S0) Root phototropism protein 2|
          Length = 593

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
 Frame = +1

Query: 124 WFCTTGLPSDVVIEVGDMTFHLHKFPLMSKSKKIHDLIM-NKESSLAR 264
           W  +  +P+DVV+EVG+  F LHKF L++KS  I  LIM +K+S + R
Sbjct: 24  WVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVTR 71

>CTRO_MOUSE (P49025) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)|
            (Rho-interacting, serine/threonine-protein kinase 21)
          Length = 2055

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 102  AQPQGPSMVLHHGAPQRRRDRGGRHDLPSPQVPANVQEQE 221
            A P+GPS       P R RDR GR +L   + P    E+E
Sbjct: 1968 APPEGPSHPREPSTPHRYRDREGRTELRRDKSPGRPLERE 2007

>SIGL6_HUMAN (O43699) Sialic acid-binding Ig-like lectin 6 precursor (Siglec-6)|
           (Obesity-binding protein 1) (OB-BP1) (CD33 antigen-like
           1) (CDw327 antigen)
          Length = 442

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 145 GAPWCRTMLGPWGCAAADPPSFPWLSCSPAS 53
           G P   T   PW C    PP F W+S +P S
Sbjct: 148 GHPSNLTCSVPWVCEQGTPPIFSWMSAAPTS 178

>ANM7_HUMAN (Q9NVM4) Protein arginine N-methyltransferase 7 (EC 2.1.1.-)|
          Length = 692

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 233 RSWIFLLLDISGNLWRWKVMSPTSITTSLGSPVV 132
           R+ ++  L  SG +W W  + P  + TSLG  V+
Sbjct: 177 RATVYAQLVESGRMWSWNKLFPIHVQTSLGEQVI 210

>NLAL2_ARATH (Q9FK53) Putative H/ACA ribonucleoprotein complex subunit 1-like|
           protein 2
          Length = 189

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  RGAGKPRERGRISSSTAPR-AKHGSAPRGSP 148
           RG G PR RG      APR A  G  PRG P
Sbjct: 149 RGRGPPRGRGNFRGRGAPRGASRGFQPRGGP 179

>UL25_HCMVA (P16761) Tegument protein UL25|
          Length = 656

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/30 (56%), Positives = 19/30 (63%)
 Frame = +2

Query: 65  AGKPRERGRISSSTAPRAKHGSAPRGSPAT 154
           A KP E+ R SS   P+   G APRGSPAT
Sbjct: 83  AKKPSEKKRSSSRRQPQIAAG-APRGSPAT 111

>ZN295_HUMAN (Q9ULJ3) Zinc finger protein 295 (Zinc finger and BTB|
           domain-containing protein 21)
          Length = 1066

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 151 DVVIEVGDMTFHLHKFPLMSKSKKIHDLIMNKES 252
           DV++ VGD  F  HK  L + S+    L  NKE+
Sbjct: 31  DVLLIVGDQKFRAHKNVLAASSEYFQSLFTNKEN 64

>M3K13_PONPY (Q5R8X7) Mitogen-activated protein kinase kinase kinase 13 (EC|
           2.7.11.25)
          Length = 966

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 118 GPWGCAAADPPSFPWLSCSPASW 50
           GPWGC  ADP   P L C P  +
Sbjct: 719 GPWGCCQADPYD-PCLQCRPEQY 740

>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +3

Query: 102 AQPQGPSMVLHHGAPQRRRDRGGRHDLPSPQVPANVQEQEDPRPDYEQGIEPGEAGEG 275
           ++PQG S     GAP + R  GGR   PSP +         P P       PG+ G G
Sbjct: 287 SRPQGGSAQGAQGAPSQERQGGGRR--PSPAM-------MPPTPGQMPAKAPGKGGRG 335

>HXA2_CHICK (Q08727) Homeobox protein Hox-A2|
          Length = 375

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 115 PWGCAAADPPSFPWLSCSPASWRRSSKPLSAKA 17
           P    A  PP +PW+    AS R S  P SA A
Sbjct: 84  PGPAGAPPPPEYPWMKEKKASKRSSLPPASASA 116

>CD33_HUMAN (P20138) Myeloid cell surface antigen CD33 precursor (Siglec-3)|
           (gp67)
          Length = 364

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 112 WGCAAADPPSFPWLSCSPAS 53
           W C    PP F WLS +P S
Sbjct: 167 WACEQGTPPIFSWLSAAPTS 186

>CD33_MOUSE (Q63994) Myeloid cell surface antigen CD33 precursor (Siglec-3)|
          Length = 403

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 145 GAPWCRTMLGPWGCAAADPPSFPWLSCSPAS 53
           G P   T   PW C    PP+F W+S +  S
Sbjct: 156 GYPSNLTCSVPWACEQGTPPTFSWMSTALTS 186

>HPS4_HUMAN (Q9NQG7) Hermansky-Pudlak syndrome 4 protein (Light-ear protein|
           homolog)
          Length = 708

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 108 PQGPSMVLHHGAPQRRRDRGGRHDLPSPQVPANVQEQEDPRPDYEQGIEPGEAG 269
           P  P M+  HGA ++  D  G H   +P   A+   +   RP     ++PG+ G
Sbjct: 428 PSAPEMLTQHGAQEQLEDHPG-HSSQAPIPRADPLPRRTRRPLLLPRLDPGQRG 480

>EPN1_RAT (O88339) Epsin-1 (EPS-15-interacting protein 1)|
          Length = 575

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -2

Query: 148 WGAPWCRTMLGPWGCAAADPPS-FPWLSCSP 59
           WGAP       PWG AA  P S  PW   +P
Sbjct: 296 WGAPAVPPAADPWGGAAPTPASGDPWRPAAP 326

>LAP4_HUMAN (Q14160) LAP4 protein (Scribble homolog protein) (hScrib)|
          Length = 1630

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
 Frame = +3

Query: 24  AESGF-EDRRHDAXXXXXXXXXXXXAAAQPQGPSMVLHHGAPQRRRDRGGRHDLPSPQVP 200
           AESG  ED R  A            + A+P+GPS     G+ Q     GG  D       
Sbjct: 516 AESGLSEDSRPSASTV---------SEAEPEGPSAEAQGGSQQEATTAGGEEDAEEDYQE 566

Query: 201 ANVQEQEDP-RPDYEQGIEPGE 263
             V   ED   P  ++ IE G+
Sbjct: 567 PTVHFAEDALLPGDDREIEEGQ 588

>LYOX_RAT (P16636) Protein-lysine 6-oxidase precursor (EC 1.4.3.13) (Lysyl|
           oxidase)
          Length = 411

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 96  AAAQPQGPSMVLHHGAPQRRRDRGGRHDLPSPQVPANVQEQEDPRPDYEQGIEPGEAGEG 275
           AAAQP+ P ++L        R    R   PSP   A  + +   R  ++ G  P  AG+G
Sbjct: 77  AAAQPRTPILLLRDN-----RTASARARTPSPSGVAAGRPRPAARHWFQVGFSPSGAGDG 131

>ANM7_MOUSE (Q922X9) Protein arginine N-methyltransferase 7 (EC 2.1.1.-)|
          Length = 692

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 233 RSWIFLLLDISGNLWRWKVMSPTSITTSLGSPVV 132
           R+ ++  L  S  +W W  + P  + TSLG  V+
Sbjct: 177 RATVYAQLVESRRMWSWNKLFPVRVRTSLGEQVI 210

>FA13C_MOUSE (Q9DBR2) Protein FAM13C1|
          Length = 601

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 144 PQRRRDRGGRHDLPSPQVPANVQEQEDPRPDYEQG 248
           P   R RG +  LP+P +   +QE+ED   D  QG
Sbjct: 440 PLYDRCRGIKQILPTPSLIPTIQEEEDSDEDCPQG 474

>SIG12_HUMAN (Q96PQ1) Sialic acid-binding Ig-like lectin 12 precursor|
           (Siglec-12) (Sialic acid-binding Ig-like lectin-like 1)
           (Siglec-L1)
          Length = 595

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 145 GAPWCRTMLGPWGCAAADPPSFPWLSCSPAS 53
           G P   T   PW C    PP+  W+  S +S
Sbjct: 286 GHPRNLTCSVPWACEQGTPPTITWMGASVSS 316

>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
 Frame = +3

Query: 102 AQPQGPSMVLHHGAPQRRRDRGGRHDL-----PSPQVPANVQEQEDPRPDYEQGIEPGEA 266
           A P  PS      AP R R R   ++L     P P  P +    E PRP    G  PG A
Sbjct: 725 AAPPAPSPA----APVRTRRRRKLYELHAAGAPPPPPPGHAPAPESPRPGSGSGSGPGLA 780

>SIG12_PANTR (Q95LH0) Sialic acid-binding Ig-like lectin 12 precursor|
           (Siglec-12) (Sialic acid-binding Ig-like lectin-like 1)
           (Siglec-L1)
          Length = 597

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 145 GAPWCRTMLGPWGCAAADPPSFPWLSCSPAS 53
           G P   T   PW C    PP+  W+  S +S
Sbjct: 288 GHPRNLTCSVPWACEQGTPPTITWMGASVSS 318

>SUM2_SCHPO (Q9HGL3) Protein sum2|
          Length = 426

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = +3

Query: 102 AQPQGPSMVLHHGAPQRRRDRGGRH-----DLPSPQVP---ANVQEQEDPRPDYEQGIEP 257
           A P G    ++  AP +    GG       D  +P VP   A  Q+Q   RP++ Q +  
Sbjct: 130 APPAGAPYYMYPNAPAQFVPPGGLPLGTPLDASTPAVPYYGAPDQQQMGQRPEFAQNVSQ 189

Query: 258 GEAGE 272
           G AG+
Sbjct: 190 GFAGQ 194

>NUCC_OENHO (Q9MTH6) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain H)
           (NADH-plastoquinone oxidoreductase 49 kDa subunit)
          Length = 393

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 224 IFLLLDISGNLWRWKVMSPTSITTSL 147
           IFL+ D SG  WRWK+  P  I   +
Sbjct: 339 IFLIGDQSGFPWRWKIRPPGFINLQI 364

>NUCC_ARATH (P56753) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain H)
           (NADH-plastoquinone oxidoreductase 49 kDa subunit)
          Length = 393

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 224 IFLLLDISGNLWRWKVMSPTSITTSL 147
           IFL+ D SG  WRWK+  P  I   +
Sbjct: 339 IFLIGDQSGFPWRWKIRPPGFINLQI 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,962,665
Number of Sequences: 219361
Number of extensions: 864198
Number of successful extensions: 3392
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3388
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)