ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet22h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK111226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 9e-41
2ref|XM_469912.1| Oryza sativa (japonica cultivar-group), mRNA 151 1e-33
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 5e-21
4gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 109 5e-21
5gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 109 5e-21
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 5e-21
7ref|NM_173570.2| Homo sapiens zinc finger, DHHC-type containing ... 48 0.015
8gb|AC128687.10| Homo sapiens 3 BAC RP11-255E6 (Roswell Park Canc... 48 0.015
9gb|BC035230.1| Homo sapiens zinc finger, DHHC-type containing 23... 48 0.015
10dbj|AK127260.1| Homo sapiens cDNA FLJ45327 fis, clone BRHIP3006950 48 0.015
11dbj|AK127025.1| Homo sapiens cDNA FLJ45081 fis, clone BRAWH3027880 48 0.015
12dbj|AK022842.1| Homo sapiens cDNA FLJ12780 fis, clone NT2RP2001813 48 0.015
13gb|AF131818.1|AF131818 Homo sapiens clone 25237 mRNA sequence 48 0.015
14dbj|AB047882.1| Macaca fascicularis brain cDNA, clone:QnpA-14365 48 0.015
15ref|NM_126054.1| Arabidopsis thaliana protein binding / signal t... 44 0.23
16ref|XM_474038.1| Oryza sativa (japonica cultivar-group), predic... 44 0.23
17gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 44 0.23
18gb|BT001071.1| Arabidopsis thaliana At5g66560/K1F13_23 mRNA, com... 44 0.23
19gb|AY049300.1| Arabidopsis thaliana AT5g66560/K1F13_23 mRNA, com... 44 0.23
20emb|BX831486.1|CNS0A290 Arabidopsis thaliana Full-length cDNA Co... 44 0.23
21dbj|AK109716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.23
22gb|U23512.1| Caenorhabditis elegans cosmid M01G4, complete sequence 42 0.91
23gb|AC022446.6| Homo sapiens chromosome 5 clone RP11-5H13, comple... 42 0.91
24gb|AC004615.1|AC004615 Homo sapiens BAC clone GS1-405L21 from 5p... 42 0.91
25gb|AF047660.2| Caenorhabditis elegans cosmid T09A12, complete se... 40 3.6
26gb|AF077539.1| Caenorhabditis elegans cosmid T25D3, complete seq... 40 3.6
27gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosom... 40 3.6
28gb|AC024214.1| Caenorhabditis elegans cosmid Y77E11A, complete s... 40 3.6
29gb|AF099924.2| Caenorhabditis elegans cosmid K07A9, complete seq... 40 3.6
30emb|AL117207.1|CEY60A3A Caenorhabditis elegans YAC Y60A3A, compl... 40 3.6
31gb|AC100788.8| Homo sapiens chromosome 17, clone CTD-2373H9, com... 40 3.6
32emb|AL032646.1|CEY54E2A Caenorhabditis elegans YAC Y54E2A, compl... 40 3.6
33emb|AL032618.1|CEY42A5A Caenorhabditis elegans YAC Y42A5A, compl... 40 3.6
34emb|Z81551.1|CEF56A12 Caenorhabditis elegans Cosmid F56A12, comp... 40 3.6
35gb|AF067612.2| Caenorhabditis elegans cosmid F55A8, complete seq... 40 3.6
36gb|AF106580.2| Caenorhabditis elegans cosmid F58B6, complete seq... 40 3.6
37emb|CR854849.7| Human DNA sequence from clone RP13-79M23 on chro... 40 3.6
38emb|AL603890.14| Human DNA sequence from clone RP11-584P2 on chr... 40 3.6
39emb|AL365443.16| Human DNA sequence from clone RP11-219C24 on ch... 40 3.6
40emb|AL008637.1|HS833B7 Human DNA sequence from clone CTA-833B7 o... 40 3.6
41emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chr... 40 3.6
42gb|AF038613.2| Caenorhabditis elegans cosmid F42A6, complete seq... 40 3.6
43gb|AY121617.1| Drosophila melanogaster GH03958 full insert cDNA 40 3.6
44gb|AE005908.1| Caulobacter crescentus CB15 section 234 of 359 of... 40 3.6
45ref|NM_142050.2| Drosophila melanogaster neither inactivation no... 40 3.6
46gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, compl... 40 3.6
47gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, comp... 40 3.6
48gb|AC020925.8| Homo sapiens chromosome 5 clone CTD-2134K2, compl... 40 3.6
49gb|AC010468.5|AC010468 Homo sapiens chromosome 5 clone CTD-2290C... 40 3.6
50gb|AC007646.8|AC007646 Drosophila melanogaster, chromosome 3R, r... 40 3.6
51gb|AC007650.7|AC007650 Drosophila melanogaster, chromosome 3R, r... 40 3.6
52gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, comple... 40 3.6
53gb|AF025463.2| Caenorhabditis elegans cosmid K10B4, complete seq... 40 3.6
54gb|AC024873.1|AC024873 Caenorhabditis elegans clone Y77E11A, com... 40 3.6
55ref|XM_320097.2| Anopheles gambiae str. PEST ENSANGP00000010655 ... 40 3.6
56gb|AC006816.2| Caenorhabditis elegans cosmid Y71D11A, complete s... 40 3.6
57emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chr... 40 3.6
58emb|Z81592.1|CET16G1 Caenorhabditis elegans Cosmid T16G1, comple... 40 3.6
59emb|Z92970.1|CEH06O01 Caenorhabditis elegans Fosmid H06O01, comp... 40 3.6
60gb|AE003701.2| Drosophila melanogaster chromosome 3R, section 39... 40 3.6
61gb|AC006733.2| Caenorhabditis elegans cosmid Y32H12A, complete s... 40 3.6
62emb|AJ276682.1|DME276682 Drosophila melanogaster mRNA for 15,15'... 40 3.6
63dbj|AB041507.1| Drosophila melanogaster mRNA for DRPE65, complet... 40 3.6 
>dbj|AK111226.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-D09, full
           insert sequence
          Length = 2493

 Score =  174 bits (88), Expect = 9e-41
 Identities = 115/124 (92%)
 Strand = Plus / Plus

                                                                       
Query: 110 ccaagggccaagcatggttctgcaccacggggctccccagcgacgtcgtgatcgaggtgg 169
           |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct: 364 ccaaaggccaagcatggttctgcaccaccggactccccagcgacgtcgtgatcgaggtcg 423

                                                                       
Query: 170 gcgacatgaccttccatctccacaagttcccgctaatgtccaagagcaagaagatccacg 229
           |||||||||| ||||||||||||||||||||| ||||||| | |||||||||| ||||||
Sbjct: 424 gcgacatgacattccatctccacaagttcccgttaatgtcgaggagcaagaagctccacg 483

               
Query: 230 acct 233
           ||||
Sbjct: 484 acct 487
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>ref|XM_469912.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2178

 Score =  151 bits (76), Expect = 1e-33
 Identities = 100/108 (92%)
 Strand = Plus / Plus

                                                                       
Query: 126 gttctgcaccacggggctccccagcgacgtcgtgatcgaggtgggcgacatgaccttcca 185
           |||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 243 gttctgcaccaccggactccccagcgacgtcgtgatcgaggtcggcgacatgacattcca 302

                                                           
Query: 186 tctccacaagttcccgctaatgtccaagagcaagaagatccacgacct 233
           |||||||||||||||| ||||||| | |||||||||| ||||||||||
Sbjct: 303 tctccacaagttcccgttaatgtcgaggagcaagaagctccacgacct 350
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 5e-21
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                            
Query: 125      ggttctgcaccacggggctccccagcgacgtcgtgatcgaggtgggcgacatgaccttcc 184
                ||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 31481698 ggttctgcaccaccggactccccagcgacgtcgtgatcgaggtcggcgacatgacattcc 31481757

                           
Query: 185      atctccacaag 195
                |||||||||||
Sbjct: 31481758 atctccacaag 31481768
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>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
              sequence
          Length = 133449

 Score =  109 bits (55), Expect = 5e-21
 Identities = 67/71 (94%)
 Strand = Plus / Minus

                                                                          
Query: 125    ggttctgcaccacggggctccccagcgacgtcgtgatcgaggtgggcgacatgaccttcc 184
              ||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 110898 ggttctgcaccaccggactccccagcgacgtcgtgatcgaggtcggcgacatgacattcc 110839

                         
Query: 185    atctccacaag 195
              |||||||||||
Sbjct: 110838 atctccacaag 110828
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
             sequence
          Length = 159091

 Score =  109 bits (55), Expect = 5e-21
 Identities = 67/71 (94%)
 Strand = Plus / Minus

                                                                         
Query: 125   ggttctgcaccacggggctccccagcgacgtcgtgatcgaggtgggcgacatgaccttcc 184
             ||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 14102 ggttctgcaccaccggactccccagcgacgtcgtgatcgaggtcggcgacatgacattcc 14043

                        
Query: 185   atctccacaag 195
             |||||||||||
Sbjct: 14042 atctccacaag 14032
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 5e-21
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                            
Query: 125      ggttctgcaccacggggctccccagcgacgtcgtgatcgaggtgggcgacatgaccttcc 184
                ||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 31572214 ggttctgcaccaccggactccccagcgacgtcgtgatcgaggtcggcgacatgacattcc 31572273

                           
Query: 185      atctccacaag 195
                |||||||||||
Sbjct: 31572274 atctccacaag 31572284
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>ref|NM_173570.2| Homo sapiens zinc finger, DHHC-type containing 23 (ZDHHC23), mRNA
          Length = 3789

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 53   tgatgcaggggagcaggaaagcca 76
            ||||||||||||||||||||||||
Sbjct: 2971 tgatgcaggggagcaggaaagcca 2994
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>gb|AC128687.10| Homo sapiens 3 BAC RP11-255E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92345

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 53    tgatgcaggggagcaggaaagcca 76
             ||||||||||||||||||||||||
Sbjct: 44389 tgatgcaggggagcaggaaagcca 44366
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>gb|BC035230.1| Homo sapiens zinc finger, DHHC-type containing 23, mRNA (cDNA clone
            MGC:42530 IMAGE:4824088), complete cds
          Length = 3789

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 53   tgatgcaggggagcaggaaagcca 76
            ||||||||||||||||||||||||
Sbjct: 2971 tgatgcaggggagcaggaaagcca 2994
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>dbj|AK127260.1| Homo sapiens cDNA FLJ45327 fis, clone BRHIP3006950
          Length = 5282

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 53   tgatgcaggggagcaggaaagcca 76
            ||||||||||||||||||||||||
Sbjct: 4093 tgatgcaggggagcaggaaagcca 4116
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>dbj|AK127025.1| Homo sapiens cDNA FLJ45081 fis, clone BRAWH3027880
          Length = 3466

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 53   tgatgcaggggagcaggaaagcca 76
            ||||||||||||||||||||||||
Sbjct: 2663 tgatgcaggggagcaggaaagcca 2686
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>dbj|AK022842.1| Homo sapiens cDNA FLJ12780 fis, clone NT2RP2001813
          Length = 2891

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 53   tgatgcaggggagcaggaaagcca 76
            ||||||||||||||||||||||||
Sbjct: 2088 tgatgcaggggagcaggaaagcca 2111
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>gb|AF131818.1|AF131818 Homo sapiens clone 25237 mRNA sequence
          Length = 2508

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 53   tgatgcaggggagcaggaaagcca 76
            ||||||||||||||||||||||||
Sbjct: 1687 tgatgcaggggagcaggaaagcca 1710
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>dbj|AB047882.1| Macaca fascicularis brain cDNA, clone:QnpA-14365
          Length = 2324

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 53   tgatgcaggggagcaggaaagcca 76
            ||||||||||||||||||||||||
Sbjct: 1503 tgatgcaggggagcaggaaagcca 1526
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>ref|NM_126054.1| Arabidopsis thaliana protein binding / signal transducer AT5G66560
           mRNA, complete cds
          Length = 2327

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 172 gacatgaccttccatctccacaagttcccgctaatgtccaagagca 217
           |||||||| ||||||||||| ||||| || || ||||| |||||||
Sbjct: 214 gacatgacattccatctccataagtttccactcatgtcaaagagca 259
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>ref|XM_474038.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1935

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 179 ccttccatctccacaagttccc 200
           ||||||||||||||||||||||
Sbjct: 122 ccttccatctccacaagttccc 143
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 145     cccagcgacgtcgtgatcgagg 166
               ||||||||||||||||||||||
Sbjct: 2387603 cccagcgacgtcgtgatcgagg 2387582
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>gb|BT001071.1| Arabidopsis thaliana At5g66560/K1F13_23 mRNA, complete cds
          Length = 2007

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 172 gacatgaccttccatctccacaagttcccgctaatgtccaagagca 217
           |||||||| ||||||||||| ||||| || || ||||| |||||||
Sbjct: 85  gacatgacattccatctccataagtttccactcatgtcaaagagca 130
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>gb|AY049300.1| Arabidopsis thaliana AT5g66560/K1F13_23 mRNA, complete cds
          Length = 2327

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 172 gacatgaccttccatctccacaagttcccgctaatgtccaagagca 217
           |||||||| ||||||||||| ||||| || || ||||| |||||||
Sbjct: 214 gacatgacattccatctccataagtttccactcatgtcaaagagca 259
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>emb|BX831486.1|CNS0A290 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS9ZD12 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2032

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 172 gacatgaccttccatctccacaagttcccgctaatgtccaagagca 217
           |||||||| ||||||||||| ||||| || || ||||| |||||||
Sbjct: 181 gacatgacattccatctccataagtttccactcatgtcaaagagca 226
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>dbj|AK109716.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H10, full
           insert sequence
          Length = 2443

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 179 ccttccatctccacaagttccc 200
           ||||||||||||||||||||||
Sbjct: 437 ccttccatctccacaagttccc 458
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>gb|U23512.1| Caenorhabditis elegans cosmid M01G4, complete sequence
          Length = 38415

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   gattatgaacaaggaatcgag 254
             |||||||||||||||||||||
Sbjct: 12144 gattatgaacaaggaatcgag 12124



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 11302 gattatgaacaaggaatcga 11321
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>gb|AC022446.6| Homo sapiens chromosome 5 clone RP11-5H13, complete sequence
          Length = 188534

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 89     aggatcagcagcagcacagcc 109
              |||||||||||||||||||||
Sbjct: 120256 aggatcagcagcagcacagcc 120276
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>gb|AC004615.1|AC004615 Homo sapiens BAC clone GS1-405L21 from 5p15.2, complete sequence
          Length = 235141

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     aggatcagcagcagcacagcc 109
              |||||||||||||||||||||
Sbjct: 187928 aggatcagcagcagcacagcc 187908
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>gb|AF047660.2| Caenorhabditis elegans cosmid T09A12, complete sequence
          Length = 32727

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 10332 gattatgaacaaggaatcga 10351
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>gb|AF077539.1| Caenorhabditis elegans cosmid T25D3, complete sequence
          Length = 16938

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 234 gattatgaacaaggaatcga 253
           ||||||||||||||||||||
Sbjct: 167 gattatgaacaaggaatcga 148
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>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 77    agggaaagagggaggatcagcagcagca 104
             ||||| |||||||||| |||||||||||
Sbjct: 72727 agggacagagggaggagcagcagcagca 72700
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>gb|AC024214.1| Caenorhabditis elegans cosmid Y77E11A, complete sequence
          Length = 121081

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    gattatgaacaaggaatcga 253
              ||||||||||||||||||||
Sbjct: 115384 gattatgaacaaggaatcga 115365



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    gattatgaacaaggaatcga 253
              ||||||||||||||||||||
Sbjct: 114518 gattatgaacaaggaatcga 114537
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>gb|AF099924.2| Caenorhabditis elegans cosmid K07A9, complete sequence
          Length = 33460

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 31501 gattatgaacaaggaatcga 31482



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 30650 gattatgaacaaggaatcga 30669
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>emb|AL117207.1|CEY60A3A Caenorhabditis elegans YAC Y60A3A, complete sequence
          Length = 122592

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 47852 gattatgaacaaggaatcga 47833



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 46960 gattatgaacaaggaatcga 46979
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>gb|AC100788.8| Homo sapiens chromosome 17, clone CTD-2373H9, complete sequence
          Length = 126502

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   ctgcaccacggggctcccca 148
             ||||||||||||||||||||
Sbjct: 27363 ctgcaccacggggctcccca 27344
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>emb|AL032646.1|CEY54E2A Caenorhabditis elegans YAC Y54E2A, complete sequence
          Length = 62615

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 4524 gattatgaacaaggaatcga 4505



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 3637 gattatgaacaaggaatcga 3656
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>emb|AL032618.1|CEY42A5A Caenorhabditis elegans YAC Y42A5A, complete sequence
          Length = 22557

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 15329 gattatgaacaaggaatcga 15310



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 13645 gattatgaacaaggaatcga 13664
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>emb|Z81551.1|CEF56A12 Caenorhabditis elegans Cosmid F56A12, complete sequence
          Length = 26028

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 2379 gattatgaacaaggaatcga 2360



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 1491 gattatgaacaaggaatcga 1510
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>gb|AF067612.2| Caenorhabditis elegans cosmid F55A8, complete sequence
          Length = 69431

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 7966 gattatgaacaaggaatcga 7947



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 7115 gattatgaacaaggaatcga 7134
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>gb|AF106580.2| Caenorhabditis elegans cosmid F58B6, complete sequence
          Length = 42079

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 40507 gattatgaacaaggaatcga 40488
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>emb|CR854849.7| Human DNA sequence from clone RP13-79M23 on chromosome 1, complete
             sequence
          Length = 153012

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    cagcagcagcacagccccaa 113
             ||||||||||||||||||||
Sbjct: 64180 cagcagcagcacagccccaa 64199
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>emb|AL603890.14| Human DNA sequence from clone RP11-584P2 on chromosome 1 Contains the
             3' end of a novel gene  similar to preferentially
             expressed antigen in melanoma (PRAME), two novel proteins
             similar to preferentially expressed antigen in melanoma
             (PRAME), a novel gene and a CpG island, complete sequence
          Length = 88806

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    cagcagcagcacagccccaa 113
             ||||||||||||||||||||
Sbjct: 66102 cagcagcagcacagccccaa 66083
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>emb|AL365443.16| Human DNA sequence from clone RP11-219C24 on chromosome 1 Contains six
             novel genes similar to preferentially expressed antigen in
             melanoma (PRAME), two novel genes, two preferentially
             expressed antigen in melanoma (PRAME) pseudogenes and a
             CpG island, complete sequence
          Length = 184591

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    cagcagcagcacagccccaa 113
             ||||||||||||||||||||
Sbjct: 89062 cagcagcagcacagccccaa 89081
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>emb|AL008637.1|HS833B7 Human DNA sequence from clone CTA-833B7 on chromosome 22q12.3-13.2
             Contains the NCF4 gene for cytosolic neutrophil factor 4
             (40kD), the 5' part of the CSF2RB gene for
             granulocyte-macrophage low-affinity colony stimulating
             factor 2 receptor beta, ESTs, STSs and GSSs, complete
             sequence
          Length = 86574

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    cgccatgatgcaggggagcaggaa 71
             |||| |||||||||||||||||||
Sbjct: 51414 cgccctgatgcaggggagcaggaa 51437
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>emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chromosome 1, complete
            sequence
          Length = 186712

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   cagcagcagcacagccccaa 113
            ||||||||||||||||||||
Sbjct: 1786 cagcagcagcacagccccaa 1767
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>gb|AF038613.2| Caenorhabditis elegans cosmid F42A6, complete sequence
          Length = 38222

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 4915 gattatgaacaaggaatcga 4896



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 4067 gattatgaacaaggaatcga 4086
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>gb|AY121617.1| Drosophila melanogaster GH03958 full insert cDNA
          Length = 2178

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 aggtgggcgacatgaccttc 183
           ||||||||||||||||||||
Sbjct: 356 aggtgggcgacatgaccttc 375
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>gb|AE005908.1| Caulobacter crescentus CB15 section 234 of 359 of the complete genome
          Length = 11320

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 145  cccagcgacgtcgtgatcgaggtgggcg 172
            |||||| ||||| |||||||||||||||
Sbjct: 9031 cccagccacgtcatgatcgaggtgggcg 9058
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>ref|NM_142050.2| Drosophila melanogaster neither inactivation nor afterpotential B
           CG9347-RA (ninaB), mRNA
          Length = 2101

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 aggtgggcgacatgaccttc 183
           ||||||||||||||||||||
Sbjct: 360 aggtgggcgacatgaccttc 379
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>gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, complete sequence
          Length = 105885

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    tcagcagcagcacagcccca 112
             ||||||||||||||||||||
Sbjct: 71671 tcagcagcagcacagcccca 71690
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>gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, complete sequence
          Length = 179513

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     tcagcagcagcacagcccca 112
              ||||||||||||||||||||
Sbjct: 175050 tcagcagcagcacagcccca 175069
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>gb|AC020925.8| Homo sapiens chromosome 5 clone CTD-2134K2, complete sequence
          Length = 161452

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      tccatcactccccaaatgccttag 24
              ||||||||||||||||| ||||||
Sbjct: 141285 tccatcactccccaaatcccttag 141308
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>gb|AC010468.5|AC010468 Homo sapiens chromosome 5 clone CTD-2290C20, complete sequence
          Length = 122102

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     tccatcactccccaaatgccttag 24
             ||||||||||||||||| ||||||
Sbjct: 50568 tccatcactccccaaatcccttag 50545
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>gb|AC007646.8|AC007646 Drosophila melanogaster, chromosome 3R, region 87F-87F, BAC clone
              BACR03J04, complete sequence
          Length = 179454

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    aggtgggcgacatgaccttc 183
              ||||||||||||||||||||
Sbjct: 119650 aggtgggcgacatgaccttc 119669
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>gb|AC007650.7|AC007650 Drosophila melanogaster, chromosome 3R, region 87F-87F, BAC clone
             BACR30G22, complete sequence
          Length = 167912

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   aggtgggcgacatgaccttc 183
             ||||||||||||||||||||
Sbjct: 26581 aggtgggcgacatgaccttc 26600
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>gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, complete sequence
          Length = 165304

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     tcagcagcagcacagcccca 112
              ||||||||||||||||||||
Sbjct: 118951 tcagcagcagcacagcccca 118932
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>gb|AF025463.2| Caenorhabditis elegans cosmid K10B4, complete sequence
          Length = 31794

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 31761 gattatgaacaaggaatcga 31742



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 27889 gattatgaacaaggaatcga 27908



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 26574 gattatgaacaaggaatcga 26593
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>gb|AC024873.1|AC024873 Caenorhabditis elegans clone Y77E11A, complete sequence
          Length = 121081

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    gattatgaacaaggaatcga 253
              ||||||||||||||||||||
Sbjct: 115384 gattatgaacaaggaatcga 115365



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    gattatgaacaaggaatcga 253
              ||||||||||||||||||||
Sbjct: 114518 gattatgaacaaggaatcga 114537
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>ref|XM_320097.2| Anopheles gambiae str. PEST ENSANGP00000010655
           (ENSANGG00000008166), partial mRNA
          Length = 2691

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 gatcgaggtgggcgacatga 178
           ||||||||||||||||||||
Sbjct: 654 gatcgaggtgggcgacatga 673
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>gb|AC006816.2| Caenorhabditis elegans cosmid Y71D11A, complete sequence
          Length = 40641

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 5328 gattatgaacaaggaatcga 5309
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>emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chromosome 1, complete
              sequence
          Length = 168039

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     cagcagcagcacagccccaa 113
              ||||||||||||||||||||
Sbjct: 160252 cagcagcagcacagccccaa 160233
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>emb|Z81592.1|CET16G1 Caenorhabditis elegans Cosmid T16G1, complete sequence
          Length = 35209

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 34149 gattatgaacaaggaatcga 34130



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 33263 gattatgaacaaggaatcga 33282
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>emb|Z92970.1|CEH06O01 Caenorhabditis elegans Fosmid H06O01, complete sequence
          Length = 18029

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  gattatgaacaaggaatcga 253
            ||||||||||||||||||||
Sbjct: 1407 gattatgaacaaggaatcga 1426
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>gb|AE003701.2| Drosophila melanogaster chromosome 3R, section 39 of 118 of the complete
              sequence
          Length = 208368

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    aggtgggcgacatgaccttc 183
              ||||||||||||||||||||
Sbjct: 100724 aggtgggcgacatgaccttc 100743
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>gb|AC006733.2| Caenorhabditis elegans cosmid Y32H12A, complete sequence
          Length = 58777

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 19824 gattatgaacaaggaatcga 19805



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattatgaacaaggaatcga 253
             ||||||||||||||||||||
Sbjct: 19183 gattatgaacaaggaatcga 19202
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>emb|AJ276682.1|DME276682 Drosophila melanogaster mRNA for 15,15' beta carotene dioxygenase
           (beta-diox gene)
          Length = 2037

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 aggtgggcgacatgaccttc 183
           ||||||||||||||||||||
Sbjct: 245 aggtgggcgacatgaccttc 264
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>dbj|AB041507.1| Drosophila melanogaster mRNA for DRPE65, complete cds
          Length = 2102

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 aggtgggcgacatgaccttc 183
           ||||||||||||||||||||
Sbjct: 352 aggtgggcgacatgaccttc 371


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,672,887
Number of Sequences: 3902068
Number of extensions: 2672887
Number of successful extensions: 57476
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57321
Number of HSP's gapped (non-prelim): 155
length of query: 275
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 253
effective length of database: 17,147,199,772
effective search space: 4338241542316
effective search space used: 4338241542316
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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