ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet22f11 |
|---|---|
| Clone Library Name | barley_pub |
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 140 bits (353), Expect = 1e-33 Identities = 69/111 (62%), Positives = 83/111 (74%), Gaps = 2/111 (1%) Frame = +2 Query: 101 TFLGTRLADPA-PQNGRIVARFGFGXXXXX-XXXXXXXXTTDRPLWFPGAQAPEYLDGTL 274 + +GTR+A P +GR A FGFG TTDRPLW+PGA +P++LDG+L Sbjct: 13 SIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSL 72 Query: 275 VGDYGFDPFGLGKPAAYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTP 427 VGDYGFDPFGLGKPA YLQ+D+DSLDQNLA+NLAG++IGTR E AD KSTP Sbjct: 73 VGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTP 123
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 138 bits (348), Expect = 5e-33 Identities = 68/110 (61%), Positives = 82/110 (74%), Gaps = 1/110 (0%) Frame = +2 Query: 101 TFLGTRL-ADPAPQNGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPGAQAPEYLDGTLV 277 + +GTR+ +D + + R ARFGFG + DRPLWFPGA++PEYLDG+LV Sbjct: 12 SIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVIS-DRPLWFPGAKSPEYLDGSLV 70 Query: 278 GDYGFDPFGLGKPAAYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTP 427 GDYGFDPFGLGKPA YLQ+D+DSLDQNLA+NL GE+IGTR E D KSTP Sbjct: 71 GDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP 120
>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast| precursor (LHCII protein 4.3) (LHCB4.3) Length = 276 Score = 121 bits (303), Expect = 8e-28 Identities = 59/111 (53%), Positives = 72/111 (64%), Gaps = 5/111 (4%) Frame = +2 Query: 110 GTRLADPAPQNGRIVARFGFGXXXXXXX-----XXXXXXTTDRPLWFPGAQAPEYLDGTL 274 G R+ DP P GR+ ARFGF DR +WFPGA PE+LDG++ Sbjct: 14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSM 73 Query: 275 VGDYGFDPFGLGKPAAYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTP 427 +GD GFDPFGLGKPA YLQYD D LDQNLA+N+AG+IIG E +++K TP Sbjct: 74 IGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124
>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29| Length = 279 Score = 63.5 bits (153), Expect = 2e-10 Identities = 31/67 (46%), Positives = 41/67 (61%) Frame = +2 Query: 227 LWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAAYLQYDVDSLDQNLAQNLAGEIIGTRFED 406 LW P PE+LDG+L GD GFDP GL KP+ ++ VD DQN A+N G + + Sbjct: 51 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSV------E 104 Query: 407 ADVKSTP 427 A V++TP Sbjct: 105 AIVQATP 111
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 60.1 bits (144), Expect = 2e-09 Identities = 24/43 (55%), Positives = 32/43 (74%) Frame = +2 Query: 218 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAAYLQYDVDS 346 DRPLWFPG+ PE+LDG+L GD+GFDP GLG L+++ + Sbjct: 64 DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQA 106
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 55.1 bits (131), Expect = 7e-08 Identities = 22/40 (55%), Positives = 29/40 (72%) Frame = +2 Query: 218 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAAYLQYD 337 DRPLWFPG+ P +LDG+L GD+GFDP GL L+++ Sbjct: 64 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN 103
>CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, chloroplast| precursor (CAB-10A) (LHCP) Length = 256 Score = 47.8 bits (112), Expect = 1e-05 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 6/41 (14%) Frame = +2 Query: 230 WFPGAQA------PEYLDGTLVGDYGFDPFGLGKPAAYLQY 334 W P + PE+LDG+L GDYGFDP GLGK A+L++ Sbjct: 55 WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 95
>CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, chloroplast| precursor (CAB-10B) (LHCP) Length = 256 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 6/41 (14%) Frame = +2 Query: 230 WFPGAQA------PEYLDGTLVGDYGFDPFGLGKPAAYLQY 334 W P ++ PE+LDG+L GD+GFDP GLGK A+L++ Sbjct: 55 WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 95
>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast| precursor Length = 261 Score = 46.2 bits (108), Expect = 3e-05 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 6/41 (14%) Frame = +2 Query: 230 WFPGAQA------PEYLDGTLVGDYGFDPFGLGKPAAYLQY 334 W P + PE+LDG+L GD+GFDP GLGK A+L++ Sbjct: 60 WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 100
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 45.8 bits (107), Expect = 4e-05 Identities = 19/33 (57%), Positives = 22/33 (66%) Frame = +2 Query: 218 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKP 316 +R LWF Q+ YLDG L GD+GFDP GL P Sbjct: 52 NRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDP 84
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 45.1 bits (105), Expect = 7e-05 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 6/50 (12%) Frame = +2 Query: 218 DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLG-KPAAYLQYDVDSL 349 DR ++ P ++ PEYL+G + GDYG+DPFGLG KP + +Y L Sbjct: 66 DRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFEL 115
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/69 (30%), Positives = 31/69 (44%) Frame = +2 Query: 140 NGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPA 319 +GR+ F + W PG +P+YL G+L GD GFDP GL + Sbjct: 27 SGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDP 86 Query: 320 AYLQYDVDS 346 L++ V + Sbjct: 87 ENLKWFVQA 95
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/34 (52%), Positives = 22/34 (64%) Frame = +2 Query: 230 WFPGAQAPEYLDGTLVGDYGFDPFGLGKPAAYLQ 331 W PG P YLDG+ GD+GFD GLG+ A L+ Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLE 82
>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor| [Contains: LH38 protein 1; LH38 protein 2; LH38 protein 3] (Fragment) Length = 530 Score = 42.0 bits (97), Expect = 6e-04 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = +2 Query: 224 PLWFPGAQAPEYLDGTLVGDYGFDPFGL 307 PLWFP AP +L+G GD GFDP GL Sbjct: 3 PLWFPNTLAPSWLNGEYYGDRGFDPAGL 30 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/30 (56%), Positives = 18/30 (60%) Frame = +2 Query: 218 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGL 307 +R LWFP P YL G GD GFDP GL Sbjct: 370 ERELWFPNIVPPRYLTGEAYGDKGFDPAGL 399 Score = 33.9 bits (76), Expect = 0.17 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = +2 Query: 227 LWFPGAQAPEYLDGTLVGDYGFDPFGL 307 LWFP A+ P L G D GFDP L Sbjct: 189 LWFPNAEPPALLTGEYPADRGFDPLNL 215
>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor| [Contains: LH35 protein 1; LH35 protein 2] (Fragment) Length = 331 Score = 37.4 bits (85), Expect = 0.015 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +2 Query: 227 LWFPGAQAPEYLDGTLVGDYGFDPFGL-GKPAAYLQYDVDSL 349 +WFPGAQ P +L G D GFDP + P Y + V + Sbjct: 161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEV 202
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 33.9 bits (76), Expect = 0.17 Identities = 21/53 (39%), Positives = 23/53 (43%) Frame = +1 Query: 10 RHPNARKGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRGAVRL 168 R R GRGG+ GR G PR GGPG RA RG VR+ Sbjct: 1442 RGRGGRGGRGGR-------------GRGGGRAPRGGGGGPGGGGRAGRGEVRV 1481
>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast| precursor (LHCII type I CAB-AB10) (LHCP) Length = 268 Score = 32.0 bits (71), Expect = 0.64 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Frame = +2 Query: 116 RLADPA---PQNGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPG---AQAPEYLDGTLV 277 ++A P+ P + ++ GF T DR + + G + P YL G Sbjct: 19 KIAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDRRVKYLGPFSGEWPSYLTGEFP 78 Query: 278 GDYGFDPFGL 307 GDYG+D GL Sbjct: 79 GDYGWDTAGL 88
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 31.6 bits (70), Expect = 0.83 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Frame = +2 Query: 215 TDRPLW---FPGAQAPEYLDGTLVGDYGFDPFGL 307 +DRPL+ F G+ P YL G GDYG+D GL Sbjct: 52 SDRPLYLGPFSGSP-PSYLSGEFPGDYGWDTAGL 84
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 31.6 bits (70), Expect = 0.83 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +2 Query: 242 AQAPEYLDGTLVGDYGFDPFGL 307 AQ P YL+G GDYG+D GL Sbjct: 61 AQTPSYLNGEFPGDYGWDTAGL 82
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 31.6 bits (70), Expect = 0.83 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +2 Query: 242 AQAPEYLDGTLVGDYGFDPFGL 307 AQ P YL+G GDYG+D GL Sbjct: 64 AQTPSYLNGEFPGDYGWDTAGL 85
>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1497 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = +1 Query: 16 PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRGA 159 P KG+ G + + GR G PR AG PG+ E+ RGA Sbjct: 601 PQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGA 648
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Frame = +2 Query: 233 FPGAQAPEYLDGTLVGDYGFDPFGL-GKPAAYLQY 334 F PEYL G GDYG+D GL P + +Y Sbjct: 45 FSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARY 79
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 30.8 bits (68), Expect = 1.4 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 14/82 (17%) Frame = +2 Query: 104 FLGTRLADPAPQNG------------RIVARFGFGXXXXXXXXXXXXXTTDRPLWFP--G 241 F G +L+ PQN R+ R G DR L+ Sbjct: 16 FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFS 75 Query: 242 AQAPEYLDGTLVGDYGFDPFGL 307 + P YL G GDYG+D GL Sbjct: 76 GEPPSYLTGEFPGDYGWDTAGL 97
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 30.4 bits (67), Expect = 1.9 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 8/77 (10%) Frame = +2 Query: 101 TFLGTRLADPAPQNGRIVARFGFGXXXXXXXXXXXXXTT------DRPLWFP--GAQAPE 256 +FLGT AP+ +V R G DRP + Q P Sbjct: 11 SFLGT-----APRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 65 Query: 257 YLDGTLVGDYGFDPFGL 307 YL G GDYG+D GL Sbjct: 66 YLTGEFPGDYGWDTAGL 82
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 DRP + + P YL+G GDYG+D GL Sbjct: 56 DRPKFLGPFSGETPSYLNGEFAGDYGWDTAGL 87
>RBL_PORCA (P50255) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 441 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +2 Query: 320 AYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKS 421 AY+ YD+D ++ L NL IIG F VK+ Sbjct: 56 AYIAYDIDLFEEGLYANLTASIIGNVFGFKAVKA 89
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 30.0 bits (66), Expect = 2.4 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 14/82 (17%) Frame = +2 Query: 104 FLGTRLADPAPQNG------------RIVARFGFGXXXXXXXXXXXXXTTDRPLWFP--G 241 F G +L+ PQN R+ R G DR ++ Sbjct: 16 FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFS 75 Query: 242 AQAPEYLDGTLVGDYGFDPFGL 307 + P YL G GDYG+D GL Sbjct: 76 GEPPSYLTGEFPGDYGWDTAGL 97
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 30.0 bits (66), Expect = 2.4 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAA 322 +AP YL G GDYG+D GL A Sbjct: 65 EAPSYLTGEFPGDYGWDTAGLSADPA 90
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 DRP + Q P YL G GDYG+D GL Sbjct: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 DRP + Q P YL G GDYG+D GL Sbjct: 25 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 56
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 DRP + Q P YL G GDYG+D GL Sbjct: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 DRP + Q P YL G GDYG+D GL Sbjct: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 28 KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGA 135 KG GG ++ G RGEH P PAG PGA Sbjct: 778 KGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGA 813
>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 205 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 DRP + Q P YL G GDYG+D GL Sbjct: 52 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 83
>RBL1_RHOPA (Q6N9J0) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 485 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 296 PFGLGKPAAYLQYDVDSLDQNLAQNLAGEIIGTRF 400 P LG+ AY+ YD+D + NL IIG F Sbjct: 92 PNSLGQYFAYIAYDLDLFEPGSISNLTASIIGNVF 126
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 +AP YL G GDYG+D GL Sbjct: 66 EAPSYLTGEFPGDYGWDTAGL 86
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 +AP YL G GDYG+D GL Sbjct: 66 EAPSYLTGEFPGDYGWDTAGL 86
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 28 KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGA 135 KG GG ++ G RGEH P PAG PGA Sbjct: 778 KGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGA 813
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 +AP YL G GDYG+D GL Sbjct: 65 EAPSYLTGEFPGDYGWDTAGL 85
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 +AP YL G GDYG+D GL Sbjct: 63 EAPSYLTGEFPGDYGWDTAGL 83
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 DRP + Q P YL G GDYG+D GL Sbjct: 52 DRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGL 83
>HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-like protein 1| Length = 859 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +1 Query: 28 KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRG 156 +GRGG +R + G GG RG R GG G +RG Sbjct: 618 RGRGGGGGFQRYDNRGPPGGNRGGFQNRGGGGGSGGGGGNYRG 660
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 DRP + Q P YL G GDYG+D GL Sbjct: 53 DRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGL 84
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL-GKPAAYLQY 334 DR W P YL G GDYG+D GL P + +Y Sbjct: 43 DRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKY 84
>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor| Length = 3137 Score = 29.3 bits (64), Expect = 4.1 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = +1 Query: 19 NARKGRGGQS*EERVSSHGFVG--GRRGEHVPRDPAGGPG-AAERAHRG 156 + R G GG + R GFVG G +G R AGGPG R RG Sbjct: 2301 DGRDGIGGPGPKGRKGERGFVGYPGPKGGPGDRGGAGGPGPKGNRGRRG 2349
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 DRP + Q P YL G GDYG+D GL Sbjct: 53 DRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGL 84
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (PNUTS protein) (MHC class I region proline-rich protein CAT53) Length = 872 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +1 Query: 16 PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRD-PAGGPGAAERAHRG 156 PN R G GG G VGG G H P + P G G+ R+H G Sbjct: 734 PNGRGGPGGG---------GMVGG--GGHRPHEGPGGSMGSGHRSHEG 770
>DHGY_HYPME (P36234) Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent| hydroxypyruvate reductase) (HPR) (GDH) (Hydroxypyruvate dehydrogenase) (Glyoxylate reductase) Length = 321 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = +2 Query: 212 TTDRPLWFPGAQAPEYLDGTLVGDYGFDPFG--LGKPAAYLQYDVDSLDQNLAQN 370 T P W P E LD +G YGF G L K A D+D D + A + Sbjct: 129 TRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS 183
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 27 ESPSYLTGEFPGDYGWDTAGL 47
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 66 ESPSYLTGEFPGDYGWDTAGL 86
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 66 ESPSYLTGEFPGDYGWDTAGL 86
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 66 ESPSYLTGEFPGDYGWDTAGL 86
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 66 ESPSYLTGEFPGDYGWDTAGL 86
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 66 ESPSYLTGEFPGDYGWDTAGL 86
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 65 ESPSYLTGEFPGDYGWDTAGL 85
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 65 ESPSYLTGEFPGDYGWDTAGL 85
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 65 ESPSYLTGEFPGDYGWDTAGL 85
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 65 ESPSYLTGEFPGDYGWDTAGL 85
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 63 ESPSYLTGEFPGDYGWDTAGL 83
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAAYLQYDVDSLDQNLAQNLAGEIIGTRF 400 + P YL G GDYG+D GL +N A+N E+I R+ Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSAD-----------PENFAKNRELEVIHCRW 113
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 64 ESPSYLTGEFPGDYGWDTAGL 84
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 64 ESPSYLTGEFPGDYGWDTAGL 84
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 67 ESPSYLTGEFPGDYGWDTAGL 87
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 245 QAPEYLDGTLVGDYGFDPFGL 307 ++P YL G GDYG+D GL Sbjct: 68 ESPSYLTGEFPGDYGWDTAGL 88
>RNP4_AERPE (Q9YD20) Ribonuclease P protein component 4 (EC 3.1.26.5) (RNase P| component 4) Length = 103 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = +1 Query: 1 WTSRHPNARKGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHR 153 W R+P + RGG + +G G GE + P G P R +R Sbjct: 41 WIHRYPYRKGPRGGAPISPPAAEYGSGGRDSGEREDKGPQGPPRQGGRDNR 91
>RBL_PORPU (P51226) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 488 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 320 AYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKS 421 AY+ YD+D ++ NL IIG F VK+ Sbjct: 103 AYIAYDIDLFEEGSIANLTASIIGNVFGFKAVKA 136
>RBL_PORAE (Q09119) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 488 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 320 AYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKS 421 AY+ YD+D ++ NL IIG F VK+ Sbjct: 103 AYIAYDIDLFEEGSIANLTASIIGNVFGFKAVKA 136
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = +2 Query: 215 TDRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 307 +DR L+ + P YL G GDYG+D GL Sbjct: 53 SDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGL 85 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,251,871 Number of Sequences: 219361 Number of extensions: 701816 Number of successful extensions: 2650 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 2384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2643 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
