ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet22f09 |
|---|---|
| Clone Library Name | barley_pub |
>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1) Length = 4374 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +3 Query: 27 QASEAAASNGRRISMAMTTTSSRLTTAYSFLSSTPCSPTS 146 + SEA A++G S T TS+ TT + S+TP PT+ Sbjct: 3468 KVSEAQANSGSGASSTTTATSTTSTTTTTAASTTPTPPTA 3507
>DNAJ_BACHK (Q6HDK8) Chaperone protein dnaJ| Length = 371 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 330 PCFPCSGSGA------QVCRFCTGAGTVTV 401 PC C GSGA + C+ C+G+G V+V Sbjct: 145 PCDTCKGSGAKPGTSKETCKHCSGSGQVSV 174
>DNAJ_BACCZ (Q634M8) Chaperone protein dnaJ| Length = 371 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 330 PCFPCSGSGA------QVCRFCTGAGTVTV 401 PC C GSGA + C+ C+G+G V+V Sbjct: 145 PCDTCKGSGAKPGTSKETCKHCSGSGQVSV 174
>DNAJ_BACCR (Q818F0) Chaperone protein dnaJ| Length = 371 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 330 PCFPCSGSGA------QVCRFCTGAGTVTV 401 PC C GSGA + C+ C+G+G V+V Sbjct: 145 PCDTCKGSGAKPGTSKETCKHCSGSGQVSV 174
>DNAJ_BACC1 (Q730M2) Chaperone protein dnaJ| Length = 371 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 330 PCFPCSGSGA------QVCRFCTGAGTVTV 401 PC C GSGA + C+ C+G+G V+V Sbjct: 145 PCDTCKGSGAKPGTSKETCKHCSGSGQVSV 174
>DNAJ_BACAN (Q81LS3) Chaperone protein dnaJ| Length = 371 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 330 PCFPCSGSGA------QVCRFCTGAGTVTV 401 PC C GSGA + C+ C+G+G V+V Sbjct: 145 PCDTCKGSGAKPGTSKETCKHCSGSGQVSV 174
>MAGD1_PIG (Q6ITT4) Melanoma-associated antigen D1 (MAGE-D1 antigen)| Length = 784 Score = 24.3 bits (51), Expect(2) = 3.1 Identities = 10/38 (26%), Positives = 15/38 (39%) Frame = -1 Query: 234 WPQPCSGRTRWPGYVGTARRVSAAADAPPCWWASMAWR 121 W P + + AR+ A PP W +AW+ Sbjct: 308 WQNPSGWQNQPARQTPPARQSPPARQTPPAWQNPVAWQ 345 Score = 23.9 bits (50), Expect(2) = 3.1 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -3 Query: 418 SPLPITTVTVPAPVQNLHTCAPEPLQGKHGW 326 +P+PITT + P N+ P Q GW Sbjct: 284 APVPITTQSPPGAPPNVLWQTPLAWQNPSGW 314
>MAGD1_HUMAN (Q9Y5V3) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (MAGE tumor antigen CCF) Length = 778 Score = 25.0 bits (53), Expect(2) = 3.1 Identities = 10/38 (26%), Positives = 15/38 (39%) Frame = -1 Query: 234 WPQPCSGRTRWPGYVGTARRVSAAADAPPCWWASMAWR 121 W P + + AR+ A PP W +AW+ Sbjct: 302 WQNPSGWQNQTARQTPPARQSPPARQTPPAWQNPVAWQ 339 Score = 23.1 bits (48), Expect(2) = 3.1 Identities = 10/31 (32%), Positives = 14/31 (45%) Frame = -3 Query: 418 SPLPITTVTVPAPVQNLHTCAPEPLQGKHGW 326 +P+P+TT P N+ P Q GW Sbjct: 278 APVPVTTQNPPGAPPNVLWQTPLAWQNPSGW 308
>DNAJ_ACEAC (Q75WD2) Chaperone protein dnaJ| Length = 379 Score = 29.3 bits (64), Expect = 4.0 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%) Frame = +3 Query: 327 QPCFPCSGSGAQV---CRFCTGAGTV 395 +PC C G+G V C+FC G GTV Sbjct: 186 RPCPTCHGAGKVVKNPCKFCHGEGTV 211
>DNAJ_DESVH (Q725M6) Chaperone protein dnaJ| Length = 376 Score = 29.3 bits (64), Expect = 4.0 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%) Frame = +3 Query: 330 PCFPCSGSGA------QVCRFCTGAGTV 395 PC C GSGA + CR C GAG + Sbjct: 149 PCDECGGSGAAPGTRPETCRHCGGAGQI 176
>DNAJ_LACLC (Q93Q66) Chaperone protein dnaJ| Length = 379 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%) Frame = +3 Query: 297 IDNSAKRDNNQPCFPCSGSGA------QVCRFCTGAGTVTVV 404 ++ K + + C C GSGA + C C G G + VV Sbjct: 142 VEKQVKYNREELCHTCGGSGAKAGTHPETCHKCGGRGQINVV 183
>DNAJ_LACLA (P35514) Chaperone protein dnaJ| Length = 379 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%) Frame = +3 Query: 297 IDNSAKRDNNQPCFPCSGSGA------QVCRFCTGAGTVTVV 404 ++ K + + C C GSGA + C C G G + VV Sbjct: 142 VEKQVKYNREELCHTCGGSGAKAGTHPETCHKCGGRGQINVV 183
>GLUQ_PROAC (Q6A7Y1) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)| Length = 347 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -3 Query: 397 VTVPAPVQNLHTCAPEPLQGKHGW 326 +T P PV +H P PL G GW Sbjct: 307 LTPPTPVAGIHRLDPRPLGGAMGW 330
>NEU3_ONCKE (P16041) Vasotocin-neurophysin VT 1 precursor [Contains: Vasotocin| (VT); Neurophysin VT 1] Length = 153 Score = 28.9 bits (63), Expect = 5.3 Identities = 20/81 (24%), Positives = 26/81 (32%) Frame = -1 Query: 387 PLRCKTCIPARPSRCRGSTAGCCLSLRNCRFDSRRKSGFLSXXXXXXXRQLWPQPCSGRT 208 P +C +C P RC G CC C S +G + P PC Sbjct: 38 PRQCMSCGPGDRGRCFGPNI-CCGEGMGCYMGSPEAAGCVE-------ENYLPSPCEAGG 89 Query: 207 RWPGYVGTARRVSAAADAPPC 145 R G G+ D+ C Sbjct: 90 RVCGSEGSCAASGVCCDSESC 110
>ZN236_HUMAN (Q9UL36) Zinc finger protein 236| Length = 1845 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = +3 Query: 18 VLAQASEAAASNGRRISMAMTTTSSRL-TTAYSFLSSTPCSPTSMA 152 VLAQA+ A++ +T T S L TT+ S S+TP SP++++ Sbjct: 1505 VLAQAAGPTATSSSGSPQEITLTISELNTTSGSLPSTTPTSPSAIS 1550
>DNAJ_TETHA (Q93R26) Chaperone protein dnaJ| Length = 386 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 6/38 (15%) Frame = +3 Query: 300 DNSAKRDNNQPCFPCSGSGA------QVCRFCTGAGTV 395 D N+ C C G+GA + C C G+GT+ Sbjct: 143 DTEVSYKRNEVCHTCGGNGAKPGTQPETCHKCKGSGTI 180
>DNAJ2_NOCFA (Q5YNI2) Chaperone protein dnaJ 2| Length = 385 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 6/29 (20%) Frame = +3 Query: 330 PCFPCSGSGAQ------VCRFCTGAGTVT 398 PC C GSGA+ VC C G G V+ Sbjct: 167 PCTTCHGSGAKPGTSPRVCPICNGTGVVS 195
>DNAJ_ENTFA (Q835R5) Chaperone protein dnaJ| Length = 389 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%) Frame = +3 Query: 297 IDNSAKRDNNQPCFPCSGSGA------QVCRFCTGAGTVTV 401 ++ K + C C G+GA + C C G+GT+ V Sbjct: 143 VEKEIKYNREDTCATCGGNGAKPGTHPETCHKCHGSGTINV 183
>RIMM_SYNP6 (Q5N0Z1) Probable 16S rRNA-processing protein rimM| Length = 182 Score = 28.5 bits (62), Expect = 6.9 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = -2 Query: 305 IVDLILVENRDSYPGGDADDADSYGHNRVLVEL-DGLDTWVP 183 ++DL +++ S P G D S G++ ++VEL DG + ++P Sbjct: 114 LIDLSVIDQASSTPLGIVRDVVSAGNDLLVVELTDGREVYIP 155
>WHITE_CERCA (Q17320) Protein white| Length = 679 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +3 Query: 66 SMAMTTTSSRLTTAYSFLSSTPCSPTSMAV 155 ++A+ T + ++T++ +L S CS TSMA+ Sbjct: 537 ALALVTLVANVSTSFGYLISCACSSTSMAL 566
>NG2_DROME (P40139) Protein new-glue 2 precursor (NG-2)| Length = 112 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 15 CVLAQASEAAASNGRRISMAMTTTSSRLTTAYSFLSSTPCSPTS 146 CV+ SEA+ + + A TTTS+ TT S ++T S ++ Sbjct: 16 CVMIHESEASTTTTSTSASATTTTSASATTTTSASATTTTSASA 59
>GLGB_HUMAN (Q04446) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (Brancher enzyme) Length = 702 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -3 Query: 214 SNSMAWIRGYRAPGLRRRGCTAMLVGEHG 128 SN W+ YR G R G T+ML HG Sbjct: 340 SNIRWWLEEYRFDGFRFDGVTSMLYHHHG 368
>DNAJ_STAES (Q8CP18) Chaperone protein dnaJ| Length = 373 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 6/29 (20%) Frame = +3 Query: 333 CFPCSGSGAQ------VCRFCTGAGTVTV 401 C C+G GA+ C +C GAG V+V Sbjct: 143 CHTCNGDGAKPGTSKKTCSYCNGAGRVSV 171
>DNAJ_STAEQ (Q5HNW7) Chaperone protein dnaJ| Length = 373 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 6/29 (20%) Frame = +3 Query: 333 CFPCSGSGAQ------VCRFCTGAGTVTV 401 C C+G GA+ C +C GAG V+V Sbjct: 143 CHTCNGDGAKPGTSKKTCSYCNGAGRVSV 171
>NG1_DROME (P23938) Protein new-glue 1 precursor (NG-1) (Salivary glue protein| homolog) Length = 107 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 15 CVLAQASEAAASNGRRISMAMTTTSSRLTTAYSFLSSTPCSPTS 146 CV+ SEA+ + + A TTTS+ TT S ++T S ++ Sbjct: 16 CVMIHESEASTTTTSTSASATTTTSASATTTTSASATTTTSASA 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,949,688 Number of Sequences: 219361 Number of extensions: 983488 Number of successful extensions: 3470 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3303 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3456 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
