ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet22f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VMAT_RABVP (P08671) Matrix protein (M2 phosphoprotein) 31 1.6
2SYA_NATPD (Q3ITT7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 31 1.6
3VMAT_RABVE (P13616) Matrix protein (M2 phosphoprotein) 28 7.7

>VMAT_RABVP (P08671) Matrix protein (M2 phosphoprotein)|
          Length = 202

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 319 LWLPLGHPPHYQPAPSLGARNYRR*SCLGGWCQLC 423
           LWLP   PP Y P   L ++  RR  C+ G  ++C
Sbjct: 31  LWLP---PPEYVPLKELTSKKNRRNFCINGGVKVC 62



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>SYA_NATPD (Q3ITT7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 932

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 215 HGSANGGETLGARGGDDDTVPDLREAEVLSSAEP 316
           HG A+     G   GDDD + DL E E L   EP
Sbjct: 495 HGEADADADDGTLAGDDDRIADLPETEKLYYEEP 528



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>VMAT_RABVE (P13616) Matrix protein (M2 phosphoprotein)|
          Length = 202

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 319 LWLPLGHPPHYQPAPSLGARNYRR*SCLGGWCQLC 423
           LWLP   PP Y P   L ++   R  C+ G  ++C
Sbjct: 31  LWLP---PPEYVPLKELTSKKNMRNFCINGGVKVC 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,630,751
Number of Sequences: 219361
Number of extensions: 476635
Number of successful extensions: 1501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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