| Clone Name | baet22f08 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | VMAT_RABVP (P08671) Matrix protein (M2 phosphoprotein) | 31 | 1.6 | 2 | SYA_NATPD (Q3ITT7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... | 31 | 1.6 | 3 | VMAT_RABVE (P13616) Matrix protein (M2 phosphoprotein) | 28 | 7.7 |
|---|
>VMAT_RABVP (P08671) Matrix protein (M2 phosphoprotein)| Length = 202 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 319 LWLPLGHPPHYQPAPSLGARNYRR*SCLGGWCQLC 423 LWLP PP Y P L ++ RR C+ G ++C Sbjct: 31 LWLP---PPEYVPLKELTSKKNRRNFCINGGVKVC 62
>SYA_NATPD (Q3ITT7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 932 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +2 Query: 215 HGSANGGETLGARGGDDDTVPDLREAEVLSSAEP 316 HG A+ G GDDD + DL E E L EP Sbjct: 495 HGEADADADDGTLAGDDDRIADLPETEKLYYEEP 528
>VMAT_RABVE (P13616) Matrix protein (M2 phosphoprotein)| Length = 202 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1 Query: 319 LWLPLGHPPHYQPAPSLGARNYRR*SCLGGWCQLC 423 LWLP PP Y P L ++ R C+ G ++C Sbjct: 31 LWLP---PPEYVPLKELTSKKNMRNFCINGGVKVC 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,630,751 Number of Sequences: 219361 Number of extensions: 476635 Number of successful extensions: 1501 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1460 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1501 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)