ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet22f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474081.1| Oryza sativa (japonica cultivar-group), predic... 458 e-126
2dbj|AK103725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 436 e-119
3gb|AY109111.1| Zea mays PCO136522 mRNA sequence 414 e-113
4emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 147 3e-32
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
6emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 147 3e-32
7emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 147 3e-32
8emb|CT009528.9| M.truncatula DNA sequence from clone MTH2-168J23... 84 4e-13
9ref|NM_113465.2| Arabidopsis thaliana amidase/ glutamyl-tRNA(Gln... 82 2e-12
10gb|BT000644.1| Arabidopsis thaliana glutamyl-tRNA amidotransfera... 82 2e-12
11gb|AY045664.1| Arabidopsis thaliana AT3g25660/T5M7_8 mRNA, compl... 82 2e-12
12emb|BX824008.1|CNS0A6YU Arabidopsis thaliana Full-length cDNA Co... 82 2e-12
13gb|AF224745.1|AF224745 Arabidopsis thaliana Glu-tRNA(Gln) amidot... 82 2e-12
14dbj|AP001313.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 68 3e-08
15dbj|AP003050.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 48 0.023
16gb|AF241729.2| Homo sapiens chromosome X clone RP5-817K2 map p11... 44 0.36
17gb|AC022212.4|AC022212 Homo sapiens BAC clone RP11-708E9 from Xq... 44 0.36
18gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 42 1.4
19ref|XM_539054.2| PREDICTED: Canis familiaris similar to ubiquiti... 42 1.4
20ref|XM_863097.1| PREDICTED: Canis familiaris similar to ubiquiti... 42 1.4
21gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 5.7
22gb|AF147806.2| Gallid herpesvirus 2, complete genome 40 5.7
23emb|CR407590.7| Zebrafish DNA sequence from clone CH211-153N15 i... 40 5.7
24gb|AC129895.5| Homo sapiens chromosome 11, clone CTD-2634E19, co... 40 5.7
25emb|AJ277662.1|HSA277662 Homo sapiens partial TUB gene for tubby... 40 5.7
26gb|AC091013.7| Homo sapiens chromosome 11, clone RP11-379P15, co... 40 5.7
27gb|AC105221.3| Homo sapiens chromosome 18, clone RP11-480N3, com... 40 5.7
28gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, comp... 40 5.7
29gb|AY510475.1| Gallid herpesvirus 2 clone Md11BAC replication in... 40 5.7
30gb|AC182392.2| Pan troglodytes BAC clone CH251-499D13 from chrom... 40 5.7
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
32dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
33dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
34gb|AC093042.3| Homo sapiens BAC clone RP11-765C7 from 2, complet... 40 5.7
35gb|AF243438.1|AF243438 Gallid herpesvirus 2 serotype 1 isolate M... 40 5.7
36gb|AC137672.2| Homo sapiens chromosome 3 clone RP11-72I12, compl... 40 5.7
37gb|AC167669.1| Mus musculus BAC clone RP24-138L8 from chromosome... 40 5.7
38dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
39dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
40dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
41emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 40 5.7
42emb|CT025639.13| Mouse DNA sequence from clone RP23-233I11 on ch... 40 5.7
43emb|AL590415.7| Mouse DNA sequence from clone RP23-97B17 on chro... 40 5.7 
>ref|XM_474081.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1494

 Score =  458 bits (231), Expect = e-126
 Identities = 375/423 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1    caatcagggctgctgcttcgcatctggaacagctaggatcggtggtggaagaggtttcga 60
            |||||| || ||||||||| ||  |||||||  | ||||| |||||||||||||||||  
Sbjct: 989  caatcaaggatgctgcttctcacttggaacaattgggatcagtggtggaagaggtttctc 1048

                                                                        
Query: 61   tgccttcattttctcttggcttgccagcatattacatattggcctcttctgaagcctcat 120
            |||||||||||||||||||| | || |||||||||||| |||| || ||||||||||| |
Sbjct: 1049 tgccttcattttctcttggcctacccgcatattacatactggcttcatctgaagcctctt 1108

                                                                        
Query: 121  ctaatttgtcacgctatgatggcatcaggtatgggcggcaggtttcggctgatgacttga 180
            ||||| | ||||| |||||||| |||||||||||| |||||||||| |  ||||||||||
Sbjct: 1109 ctaatctatcacgttatgatggtatcaggtatgggaggcaggtttcaggcgatgacttga 1168

                                                                        
Query: 181  atgagctctacggaaattcccgggctagtggtctcggtcatgaggtcaaaatgagaattt 240
            |||| || || |||  |||||||||||  ||||| ||||| |||||||||||||||||||
Sbjct: 1169 atgaactttatggaggttcccgggctaacggtctgggtcacgaggtcaaaatgagaattt 1228

                                                                        
Query: 241  tgatgggaacttatgcattatctgctggatactatgatgcatactacaaacgagcgcaac 300
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1229 tgatgggaacttatgctttatctgctggatactatgatgcatactacaaacgagcacaac 1288

                                                                        
Query: 301  aggtgaggacgctggttaagaaaagcttcgaagaagctttgggcaaatacgatattctta 360
            |||| ||||| |||||||||||||||||| |||||||| |||  | ||||||||||||| 
Sbjct: 1289 aggtaaggacactggttaagaaaagcttcaaagaagctctggaaagatacgatattcttg 1348

                                                                        
Query: 361  tttcacctgctgctccatcagcagcctacaagataggtgaaaagacaaatgatccattag 420
            ||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 1349 tttcacctgctgcgccatcagcagcttacaagataggtgaaaagataaatgatccattag 1408

               
Query: 421  cta 423
            |||
Sbjct: 1409 cta 1411
to top
>dbj|AK103725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138C11, full
            insert sequence
          Length = 2004

 Score =  436 bits (220), Expect = e-119
 Identities = 375/426 (88%), Gaps = 3/426 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    caatcagggctgctgcttcgcatctggaacagctaggatcggtggtggaagaggtttcga 60
            |||||| || ||||||||| ||  |||||||  | ||||| |||||||||||||||||  
Sbjct: 1078 caatcaaggatgctgcttctcacttggaacaattgggatcagtggtggaagaggtttctc 1137

                                                                        
Query: 61   tgccttcattttctcttggcttgccagcatattacatattggcctcttctgaagcctcat 120
            |||||||||||||||||||| | || |||||||||||| |||| || ||||||||||| |
Sbjct: 1138 tgccttcattttctcttggcctacccgcatattacatactggcttcatctgaagcctctt 1197

                                                                        
Query: 121  ctaatttgtcacgctatgatggcatcaggtatgggcggcaggtttcggctgatgacttga 180
            ||||| | ||||| |||||||| |||||||||||| |||||||||| |  ||||||||||
Sbjct: 1198 ctaatctatcacgttatgatggtatcaggtatgggaggcaggtttcaggcgatgacttga 1257

                                                                        
Query: 181  atgagctctacggaaattcccgggctagtggtctcggtcatgaggtcaaaatgagaattt 240
            |||| || || |||  |||||||||||  ||||| ||||| |||||||||||||||||||
Sbjct: 1258 atgaactttatggaggttcccgggctaacggtctgggtcacgaggtcaaaatgagaattt 1317

                                                                        
Query: 241  tgatgggaacttatgcattatctgctggatactatgatgcatactacaaacgagcgcaac 300
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1318 tgatgggaacttatgctttatctgctggatactatgatgcatactacaaacgagcacaac 1377

                                                                        
Query: 301  ---aggtgaggacgctggttaagaaaagcttcgaagaagctttgggcaaatacgatattc 357
               |||| ||||| |||||||||||||||||| |||||||| |||  | |||||||||||
Sbjct: 1378 agtaggtaaggacactggttaagaaaagcttcaaagaagctctggaaagatacgatattc 1437

                                                                        
Query: 358  ttatttcacctgctgctccatcagcagcctacaagataggtgaaaagacaaatgatccat 417
            || ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 1438 ttgtttcacctgctgcgccatcagcagcttacaagataggtgaaaagataaatgatccat 1497

                  
Query: 418  tagcta 423
            ||||||
Sbjct: 1498 tagcta 1503
to top
>gb|AY109111.1| Zea mays PCO136522 mRNA sequence
          Length = 1218

 Score =  414 bits (209), Expect = e-113
 Identities = 368/421 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatcagggctgctgcttcgcatctggaacagctaggatcggtggtggaagaggtttcga 60
           |||||| || ||||||||| || ||||| ||| | ||||| |||||||||||||||||  
Sbjct: 300 caatcaagggtgctgcttcacacctggagcagttgggatctgtggtggaagaggtttcac 359

                                                                       
Query: 61  tgccttcattttctcttggcttgccagcatattacatattggcctcttctgaagcctcat 120
           |||||||||||||||||||||| ||||||||||||||| | ||||| |||||||| || |
Sbjct: 360 tgccttcattttctcttggcttaccagcatattacatactagcctcatctgaagcttctt 419

                                                                       
Query: 121 ctaatttgtcacgctatgatggcatcaggtatgggcggcaggtttcggctgatgacttga 180
           ||||| | |||||||||||||| |||||||||||  | ||||| ||||| ||||||||||
Sbjct: 420 ctaatctatcacgctatgatggtatcaggtatggaggacaggtctcggcggatgacttga 479

                                                                       
Query: 181 atgagctctacggaaattcccgggctagtggtctcggtcatgaggtcaaaatgagaattt 240
           ||||||| || ||| | |||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 480 atgagctttatggagagtcccgggctaatggttttggtcatgaggtcaaaatgagaattt 539

                                                                       
Query: 241 tgatgggaacttatgcattatctgctggatactatgatgcatactacaaacgagcgcaac 300
           |||||||||| |||||  | |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 540 tgatgggaacctatgctctttctgctgggtactatgatgcatactacaaacgagcacaac 599

                                                                       
Query: 301 aggtgaggacgctggttaagaaaagcttcgaagaagctttgggcaaatacgatattctta 360
           |||| ||||| ||||||||| |||||||| |||| |||||||  | |||||| ||||| |
Sbjct: 600 aggtcaggacactggttaagcaaagcttcaaagatgctttggaaagatacgacattctaa 659

                                                                       
Query: 361 tttcacctgctgctccatcagcagcctacaagataggtgaaaagacaaatgatccattag 420
           | ||||| ||||| ||||||||||||||||||||||||||||||| |||||| || ||||
Sbjct: 660 tctcaccagctgcgccatcagcagcctacaagataggtgaaaagataaatgacccgttag 719

            
Query: 421 c 421
           |
Sbjct: 720 c 720
to top
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
              complete sequence
          Length = 150416

 Score =  147 bits (74), Expect = 3e-32
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                          
Query: 223    aggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgcat 282
              |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 130652 aggtcaaaatgagaattttgatgggaacttatgctttatctgctggatactatgatgcat 130593

                                    
Query: 283    actacaaacgagcgcaacaggt 304
              ||||||||||||| ||||||||
Sbjct: 130592 actacaaacgagcacaacaggt 130571



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                          
Query: 301    aggtgaggacgctggttaagaaaagcttcgaagaagctttgggcaaatacgatattctta 360
              |||| ||||| |||||||||||||||||| |||||||| |||  | ||||||||||||| 
Sbjct: 130464 aggtaaggacactggttaagaaaagcttcaaagaagctctggaaagatacgatattcttg 130405

                                                    
Query: 361    tttcacctgctgctccatcagcagcctacaagataggt 398
              ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 130404 tttcacctgctgcgccatcagcagcttacaagataggt 130367



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                          
Query: 52     aggtttcgatgccttcattttctcttggcttgccagcatattacatattggcctcttctg 111
              |||||||  |||||||||||||||||||| | || |||||||||||| |||| || ||||
Sbjct: 131082 aggtttctctgccttcattttctcttggcctacccgcatattacatactggcttcatctg 131023

                                                     
Query: 112    aagcctcatctaatttgtcacgctatgatggcatcaggt 150
              ||||||| |||||| | ||||| |||||||| |||||||
Sbjct: 131022 aagcctcttctaatctatcacgttatgatggtatcaggt 130984



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                          
Query: 146    caggtatgggcggcaggtttcggctgatgacttgaatgagctctacggaaattcccgggc 205
              |||||||||| |||||||||| |  |||||||||||||| || || |||  |||||||||
Sbjct: 130904 caggtatgggaggcaggtttcaggcgatgacttgaatgaactttatggaggttcccgggc 130845

                                   
Query: 206    tagtggtctcggtcatgaggt 226
              ||  ||||| ||||| |||||
Sbjct: 130844 taacggtctgggtcacgaggt 130824



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 395    aggtgaaaagacaaatgatccattagcta 423
              ||||||||||| |||||||||||||||||
Sbjct: 130289 aggtgaaaagataaatgatccattagcta 130261



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                       
Query: 1      caatcagggctgctgcttcgcatctggaacagctaggatcggtggtggaagaggttt 57
              |||||| || ||||||||| ||  |||||||  | ||||| ||||||||||||||||
Sbjct: 131229 caatcaaggatgctgcttctcacttggaacaattgggatcagtggtggaagaggttt 131173
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  147 bits (74), Expect = 3e-32
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                            
Query: 223      aggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgcat 282
                |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 32771223 aggtcaaaatgagaattttgatgggaacttatgctttatctgctggatactatgatgcat 32771164

                                      
Query: 283      actacaaacgagcgcaacaggt 304
                ||||||||||||| ||||||||
Sbjct: 32771163 actacaaacgagcacaacaggt 32771142



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                            
Query: 301      aggtgaggacgctggttaagaaaagcttcgaagaagctttgggcaaatacgatattctta 360
                |||| ||||| |||||||||||||||||| |||||||| |||  | ||||||||||||| 
Sbjct: 32771035 aggtaaggacactggttaagaaaagcttcaaagaagctctggaaagatacgatattcttg 32770976

                                                      
Query: 361      tttcacctgctgctccatcagcagcctacaagataggt 398
                ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 32770975 tttcacctgctgcgccatcagcagcttacaagataggt 32770938



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                            
Query: 52       aggtttcgatgccttcattttctcttggcttgccagcatattacatattggcctcttctg 111
                |||||||  |||||||||||||||||||| | || |||||||||||| |||| || ||||
Sbjct: 32771653 aggtttctctgccttcattttctcttggcctacccgcatattacatactggcttcatctg 32771594

                                                       
Query: 112      aagcctcatctaatttgtcacgctatgatggcatcaggt 150
                ||||||| |||||| | ||||| |||||||| |||||||
Sbjct: 32771593 aagcctcttctaatctatcacgttatgatggtatcaggt 32771555



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                            
Query: 146      caggtatgggcggcaggtttcggctgatgacttgaatgagctctacggaaattcccgggc 205
                |||||||||| |||||||||| |  |||||||||||||| || || |||  |||||||||
Sbjct: 32771475 caggtatgggaggcaggtttcaggcgatgacttgaatgaactttatggaggttcccgggc 32771416

                                     
Query: 206      tagtggtctcggtcatgaggt 226
                ||  ||||| ||||| |||||
Sbjct: 32771415 taacggtctgggtcacgaggt 32771395



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 395      aggtgaaaagacaaatgatccattagcta 423
                ||||||||||| |||||||||||||||||
Sbjct: 32770860 aggtgaaaagataaatgatccattagcta 32770832



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                         
Query: 1        caatcagggctgctgcttcgcatctggaacagctaggatcggtggtggaagaggttt 57
                |||||| || ||||||||| ||  |||||||  | ||||| ||||||||||||||||
Sbjct: 32771800 caatcaaggatgctgcttctcacttggaacaattgggatcagtggtggaagaggttt 32771744
to top
>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete
             sequence
          Length = 91539

 Score =  147 bits (74), Expect = 3e-32
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                         
Query: 223   aggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgcat 282
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41373 aggtcaaaatgagaattttgatgggaacttatgctttatctgctggatactatgatgcat 41314

                                   
Query: 283   actacaaacgagcgcaacaggt 304
             ||||||||||||| ||||||||
Sbjct: 41313 actacaaacgagcacaacaggt 41292



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                         
Query: 301   aggtgaggacgctggttaagaaaagcttcgaagaagctttgggcaaatacgatattctta 360
             |||| ||||| |||||||||||||||||| |||||||| |||  | ||||||||||||| 
Sbjct: 41185 aggtaaggacactggttaagaaaagcttcaaagaagctctggaaagatacgatattcttg 41126

                                                   
Query: 361   tttcacctgctgctccatcagcagcctacaagataggt 398
             ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 41125 tttcacctgctgcgccatcagcagcttacaagataggt 41088



 Score =  101 bits (51), Expect = 2e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                         
Query: 52    aggtttcgatgccttcattttctcttggcttgccagcatattacatattggcctcttctg 111
             |||||||  |||||||||||||||||||| | || |||||||||||| |||| || ||||
Sbjct: 41803 aggtttctctgccttcattttctcttggcctacccgcatattacatactggcttcatctg 41744

                                                    
Query: 112   aagcctcatctaatttgtcacgctatgatggcatcaggt 150
             ||||||| |||||| | |||||||||||||| |||||||
Sbjct: 41743 aagcctcttctaatctatcacgctatgatggtatcaggt 41705



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                         
Query: 146   caggtatgggcggcaggtttcggctgatgacttgaatgagctctacggaaattcccgggc 205
             |||||||||| |||||||||| | ||||||||||||||| || || |||  |||||||||
Sbjct: 41625 caggtatgggaggcaggtttcaggtgatgacttgaatgaactttatggaggttcccgggc 41566

                                  
Query: 206   tagtggtctcggtcatgaggt 226
             ||  ||||| ||||| |||||
Sbjct: 41565 taacggtctgggtcacgaggt 41545



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 395   aggtgaaaagacaaatgatccattagcta 423
             ||||||||||| |||||||||||||||||
Sbjct: 41010 aggtgaaaagataaatgatccattagcta 40982



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 1     caatcagggctgctgcttcgcatctggaacagctaggatcggtggtggaagaggttt 57
             |||||| || ||||||||| ||  |||||||  | ||||| ||||||||||||||||
Sbjct: 41950 caatcaaggatgctgcttctcacttggaacaattgggatcagtggtggaagaggttt 41894
to top
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score =  147 bits (74), Expect = 3e-32
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                         
Query: 223   aggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgcat 282
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 33509 aggtcaaaatgagaattttgatgggaacttatgctttatctgctggatactatgatgcat 33450

                                   
Query: 283   actacaaacgagcgcaacaggt 304
             ||||||||||||| ||||||||
Sbjct: 33449 actacaaacgagcacaacaggt 33428



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                         
Query: 301   aggtgaggacgctggttaagaaaagcttcgaagaagctttgggcaaatacgatattctta 360
             |||| ||||| |||||||||||||||||| |||||||| |||  | ||||||||||||| 
Sbjct: 33321 aggtaaggacactggttaagaaaagcttcaaagaagctctggaaagatacgatattcttg 33262

                                                   
Query: 361   tttcacctgctgctccatcagcagcctacaagataggt 398
             ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 33261 tttcacctgctgcgccatcagcagcttacaagataggt 33224



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                         
Query: 52    aggtttcgatgccttcattttctcttggcttgccagcatattacatattggcctcttctg 111
             |||||||  |||||||||||||||||||| | || |||||||||||| |||| || ||||
Sbjct: 33939 aggtttctctgccttcattttctcttggcctacccgcatattacatactggcttcatctg 33880

                                                    
Query: 112   aagcctcatctaatttgtcacgctatgatggcatcaggt 150
             ||||||| |||||| | ||||| |||||||| |||||||
Sbjct: 33879 aagcctcttctaatctatcacgttatgatggtatcaggt 33841



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                         
Query: 146   caggtatgggcggcaggtttcggctgatgacttgaatgagctctacggaaattcccgggc 205
             |||||||||| |||||||||| |  |||||||||||||| || || |||  |||||||||
Sbjct: 33761 caggtatgggaggcaggtttcaggcgatgacttgaatgaactttatggaggttcccgggc 33702

                                  
Query: 206   tagtggtctcggtcatgaggt 226
             ||  ||||| ||||| |||||
Sbjct: 33701 taacggtctgggtcacgaggt 33681



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 395   aggtgaaaagacaaatgatccattagcta 423
             ||||||||||| |||||||||||||||||
Sbjct: 33146 aggtgaaaagataaatgatccattagcta 33118



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 1     caatcagggctgctgcttcgcatctggaacagctaggatcggtggtggaagaggttt 57
             |||||| || ||||||||| ||  |||||||  | ||||| ||||||||||||||||
Sbjct: 34086 caatcaaggatgctgcttctcacttggaacaattgggatcagtggtggaagaggttt 34030
to top
>emb|CT009528.9| M.truncatula DNA sequence from clone MTH2-168J23 on chromosome 3,
             complete sequence
          Length = 129215

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                         
Query: 223   aggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgcat 282
             |||| |||||||||||||||||||| || |||||  | || ||||| |||||||||||||
Sbjct: 65674 aggtgaaaatgagaattttgatggggacatatgccctttcagctggttactatgatgcat 65733

                                   
Query: 283   actacaaacgagcgcaacaggt 304
             | |||||||||||||| |||||
Sbjct: 65734 attacaaacgagcgcagcaggt 65755
to top
>ref|NM_113465.2| Arabidopsis thaliana amidase/ glutamyl-tRNA(Gln) amidotransferase
            AT3G25660 mRNA, complete cds
          Length = 1973

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 222  gaggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgca 281
            ||||| |||||||||||||| ||||| || |||||| | ||||| || ||||| ||||| 
Sbjct: 1349 gaggtgaaaatgagaattttaatggggacatatgcactttctgcgggttactacgatgct 1408

                                         
Query: 282  tactacaaacgagcgcaacaggtgaggac 310
            |||||||| ||||| ||||||||||||||
Sbjct: 1409 tactacaagcgagctcaacaggtgaggac 1437
to top
>gb|BT000644.1| Arabidopsis thaliana glutamyl-tRNA amidotransferase subunit A,
            putative  (At3g25660/T5M7_8) mRNA, complete cds
          Length = 1614

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 222  gaggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgca 281
            ||||| |||||||||||||| ||||| || |||||| | ||||| || ||||| ||||| 
Sbjct: 1189 gaggtgaaaatgagaattttaatggggacatatgcactttctgcgggttactacgatgct 1248

                                         
Query: 282  tactacaaacgagcgcaacaggtgaggac 310
            |||||||| ||||| ||||||||||||||
Sbjct: 1249 tactacaagcgagctcaacaggtgaggac 1277
to top
>gb|AY045664.1| Arabidopsis thaliana AT3g25660/T5M7_8 mRNA, complete cds
          Length = 1892

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 222  gaggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgca 281
            ||||| |||||||||||||| ||||| || |||||| | ||||| || ||||| ||||| 
Sbjct: 1351 gaggtgaaaatgagaattttaatggggacatatgcactttctgcgggttactacgatgct 1410

                                         
Query: 282  tactacaaacgagcgcaacaggtgaggac 310
            |||||||| ||||| ||||||||||||||
Sbjct: 1411 tactacaagcgagctcaacaggtgaggac 1439
to top
>emb|BX824008.1|CNS0A6YU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH14ZC07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1845

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 222  gaggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgca 281
            ||||| |||||||||||||| ||||| || |||||| | ||||| || ||||| ||||| 
Sbjct: 1335 gaggtgaaaatgagaattttaatggggacatatgcactttctgcgggttactacgatgct 1394

                                         
Query: 282  tactacaaacgagcgcaacaggtgaggac 310
            |||||||| ||||| ||||||||||||||
Sbjct: 1395 tactacaagcgagctcaacaggtgaggac 1423
to top
>gb|AF224745.1|AF224745 Arabidopsis thaliana Glu-tRNA(Gln) amidotransferase subunit A mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1849

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 222  gaggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgca 281
            ||||| |||||||||||||| ||||| || |||||| | ||||| || ||||| ||||| 
Sbjct: 1334 gaggtgaaaatgagaattttaatggggacatatgcactttctgcgggttactacgatgct 1393

                                         
Query: 282  tactacaaacgagcgcaacaggtgaggac 310
            |||||||| ||||| ||||||||||||||
Sbjct: 1394 tactacaagcgagctcaacaggtgaggac 1422
to top
>dbj|AP001313.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T5M7
          Length = 65177

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                         
Query: 223   aggtcaaaatgagaattttgatgggaacttatgcattatctgctggatactatgatgcat 282
             |||| |||||||||||||| ||||| || |||||| | ||||| || ||||| ||||| |
Sbjct: 42186 aggtgaaaatgagaattttaatggggacatatgcactttctgcgggttactacgatgctt 42127

                                   
Query: 283   actacaaacgagcgcaacaggt 304
             ||||||| ||||| ||||||||
Sbjct: 42126 actacaagcgagctcaacaggt 42105
to top
>dbj|AP003050.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-410I24, complete
             sequence
          Length = 152715

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 360   atttcacctgctgctccatcagca 383
             ||||||||||||||||||||||||
Sbjct: 68003 atttcacctgctgctccatcagca 67980
to top
>gb|AF241729.2| Homo sapiens chromosome X clone RP5-817K2 map p11.4, complete sequence
          Length = 141582

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 356   tcttatttcacctgctgctcca 377
             ||||||||||||||||||||||
Sbjct: 65345 tcttatttcacctgctgctcca 65366
to top
>gb|AC022212.4|AC022212 Homo sapiens BAC clone RP11-708E9 from Xq23, complete sequence
          Length = 187313

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 356    tcttatttcacctgctgctcca 377
              ||||||||||||||||||||||
Sbjct: 139040 tcttatttcacctgctgctcca 139061
to top
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                   
Query: 234    agaattttgatgggaacttatgcattatctgctggatactatgatgcatacta 286
              ||||||||||| ||||||||||| || || || ||||||  ||| ||||||||
Sbjct: 788737 agaattttgataggaacttatgctttgtccgcaggatacagtgacgcatacta 788789
to top
>ref|XM_539054.2| PREDICTED: Canis familiaris similar to ubiquitin specific protease
           45, transcript variant 1 (LOC481933), mRNA
          Length = 2391

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 246 ggaacttatgcattatctgctggat 270
           ||||||| |||||||||||||||||
Sbjct: 885 ggaacttctgcattatctgctggat 909
to top
>ref|XM_863097.1| PREDICTED: Canis familiaris similar to ubiquitin specific protease
           45, transcript variant 2 (LOC481933), mRNA
          Length = 2253

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 246 ggaacttatgcattatctgctggat 270
           ||||||| |||||||||||||||||
Sbjct: 885 ggaacttctgcattatctgctggat 909
to top
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      tggtggaagaggtttcgatg 62
               ||||||||||||||||||||
Sbjct: 2005088 tggtggaagaggtttcgatg 2005069
to top
>gb|AF147806.2| Gallid herpesvirus 2, complete genome
          Length = 174077

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    atggcatcaggtatgggcgg 158
              ||||||||||||||||||||
Sbjct: 113307 atggcatcaggtatgggcgg 113326
to top
>emb|CR407590.7| Zebrafish DNA sequence from clone CH211-153N15 in linkage group 2,
             complete sequence
          Length = 176623

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   aaaagacaaatgatccatta 419
             ||||||||||||||||||||
Sbjct: 37680 aaaagacaaatgatccatta 37661
to top
>gb|AC129895.5| Homo sapiens chromosome 11, clone CTD-2634E19, complete sequence
          Length = 140077

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 389  caagataggtgaaaagacaaatga 412
            ||||| ||||||||||||||||||
Sbjct: 8183 caagaaaggtgaaaagacaaatga 8206
to top
>emb|AJ277662.1|HSA277662 Homo sapiens partial TUB gene for tubby (mouse) homolog and LMO1 gene for
              LIM domain only 1 protein
          Length = 174986

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 389    caagataggtgaaaagacaaatga 412
              ||||| ||||||||||||||||||
Sbjct: 122890 caagaaaggtgaaaagacaaatga 122867
to top
>gb|AC091013.7| Homo sapiens chromosome 11, clone RP11-379P15, complete sequence
          Length = 223741

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 389    caagataggtgaaaagacaaatga 412
              ||||| ||||||||||||||||||
Sbjct: 176194 caagaaaggtgaaaagacaaatga 176217
to top
>gb|AC105221.3| Homo sapiens chromosome 18, clone RP11-480N3, complete sequence
          Length = 165396

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 391   agataggtgaaaagacaaatgatc 414
             ||||||||||||||| ||||||||
Sbjct: 29422 agataggtgaaaagaaaaatgatc 29445
to top
>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence
          Length = 156107

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    cagcagcctacaagataggt 398
              ||||||||||||||||||||
Sbjct: 117907 cagcagcctacaagataggt 117926
to top
>gb|AY510475.1| Gallid herpesvirus 2 clone Md11BAC replication intermediate, complete
              genome
          Length = 170950

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    atggcatcaggtatgggcgg 158
              ||||||||||||||||||||
Sbjct: 125384 atggcatcaggtatgggcgg 125403
to top
>gb|AC182392.2| Pan troglodytes BAC clone CH251-499D13 from chromosome 2, complete
             sequence
          Length = 159910

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 239   tttgatgggaacttatgcattatctgct 266
             |||||||| ||||||||||| |||||||
Sbjct: 65029 tttgatggaaacttatgcatgatctgct 65002
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 40       cggtggtggaagaggtttcg 59
                ||||||||||||||||||||
Sbjct: 10760547 cggtggtggaagaggtttcg 10760566
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 318      aagaaaagcttcgaagaagc 337
                ||||||||||||||||||||
Sbjct: 13721870 aagaaaagcttcgaagaagc 13721889
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 59       gatgccttcattttctcttg 78
                ||||||||||||||||||||
Sbjct: 28947447 gatgccttcattttctcttg 28947428
to top
>gb|AC093042.3| Homo sapiens BAC clone RP11-765C7 from 2, complete sequence
          Length = 57491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   caagataggtgaaaagacaa 408
             ||||||||||||||||||||
Sbjct: 38949 caagataggtgaaaagacaa 38968
to top
>gb|AF243438.1|AF243438 Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome
          Length = 177874

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    atggcatcaggtatgggcgg 158
              ||||||||||||||||||||
Sbjct: 114806 atggcatcaggtatgggcgg 114825
to top
>gb|AC137672.2| Homo sapiens chromosome 3 clone RP11-72I12, complete sequence
          Length = 150313

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 379    cagcagcctacaagataggt 398
              ||||||||||||||||||||
Sbjct: 128780 cagcagcctacaagataggt 128761
to top
>gb|AC167669.1| Mus musculus BAC clone RP24-138L8 from chromosome 13, complete sequence
          Length = 202905

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 114   gcctcatctaatttgtcacgctatgatg 141
             |||| |||||||||| ||||||||||||
Sbjct: 52124 gcctaatctaatttgacacgctatgatg 52097
to top
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17
          Length = 180015

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    gatgccttcattttctcttg 78
             ||||||||||||||||||||
Sbjct: 64984 gatgccttcattttctcttg 64965
to top
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0085I16
          Length = 141701

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    cggtggtggaagaggtttcg 59
             ||||||||||||||||||||
Sbjct: 97165 cggtggtggaagaggtttcg 97184
to top
>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0406D01
          Length = 163932

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   aagaaaagcttcgaagaagc 337
             ||||||||||||||||||||
Sbjct: 35939 aagaaaagcttcgaagaagc 35958
to top
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 110     tgaagcctcatctaatttgtcacg 133
               ||||||||||||||| ||||||||
Sbjct: 1517801 tgaagcctcatctaacttgtcacg 1517778
to top
>emb|CT025639.13| Mouse DNA sequence from clone RP23-233I11 on chromosome 13, complete
             sequence
          Length = 219226

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 114   gcctcatctaatttgtcacgctatgatg 141
             |||| |||||||||| ||||||||||||
Sbjct: 48738 gcctaatctaatttgacacgctatgatg 48765
to top
>emb|AL590415.7| Mouse DNA sequence from clone RP23-97B17 on chromosome 2, complete
             sequence
          Length = 146734

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   aaagacaaatgatccattag 420
             ||||||||||||||||||||
Sbjct: 36209 aaagacaaatgatccattag 36228


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,074,312
Number of Sequences: 3902068
Number of extensions: 4074312
Number of successful extensions: 77041
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76874
Number of HSP's gapped (non-prelim): 166
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top