>IAA13_ORYSA (Q7Y1Y5) Auxin-responsive protein IAA13 (Indoleacetic acid-induced|
           protein 13)
          Length = 236

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 176 MAGADVDVGTXXXXXX----XXXXXXXXXXXXXXYEDTIDLKLTLPTGGMQEDSAG 331
           MAGADVDVGT                        +E+TIDLKL LPT GM+E +AG
Sbjct: 1   MAGADVDVGTELRLGLPGGGGGAAEAAAKAAKRGFEETIDLKLKLPTAGMEEAAAG 56

>VP3_ARMV (P24820) P3 protein|
          Length = 360

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 328 GGVFLHAAGGQRQLQ-VNGVLIAPLPGLGRLGAASRQPEPELRPDVDIG 185
           GG  +HA+ GQ+Q   ++ +L  P     R+GA S+ P+ +  PD   G
Sbjct: 125 GGHCVHASKGQKQATYLSSLLSNPSGAKSRMGAVSKPPQTKNAPDASKG 173

>GLYA2_RHILO (Q98A81) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine|
           methylase 2) (SHMT 2)
          Length = 437

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 322 VFLHAAGGQRQLQVNGVLIAPLPGLGRLGAASRQPEPELRPDVDIGASHR 173
           VF +AA  +  L+ N  L+A +  +  L  A   P P +  DV    SH+
Sbjct: 185 VFDYAAMAEIALEANSYLVADIAHISGLIVAGAHPNPVVHCDVVTSTSHK 234

>B4GT1_HUMAN (P15291) Beta-1,4-galactosyltransferase 1 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 1) (Beta4Gal-T1) (b4Gal-T1)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 1) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 1) [Includes: L
          Length = 397

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 388 VSGRGLCRPLGLVGCRLRLAGGVFLHAAGGQRQLQVNGVLIAPLPGLGRLGAASRQPEP- 212
           ++GR L R   LVG    L GG    AA GQ   ++      P P LG    AS QP P 
Sbjct: 41  LAGRDLSRLPQLVGVSTPLQGGSNSAAAIGQSSGELRTGGARPPPPLG----ASSQPRPG 96

Query: 211 -ELRPDVDIG 185
            +  P VD G
Sbjct: 97  GDSSPVVDSG 106

>VAT1_HUMAN (Q99536) Synaptic vesicle membrane protein VAT-1 homolog (EC|
           1.-.-.-)
          Length = 393

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 122 GGRPKHRLASRPAAPPEPMAG 184
           GG  K +L SRPAAPP P  G
Sbjct: 57  GGYDKVKLQSRPAAPPAPGPG 77

>MURD_VIBF1 (Q5E2P8) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 440

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 337 RLAGGVFLHAAGGQRQLQVNGVLIAPLPGLGRLGAASRQPEPELRPDVDIGAS--HRLRW 164
           +L   V LH+ G Q+   +N  LI   PG+           P+L+P +D G      +  
Sbjct: 49  QLPENVELHSGGWQQDWLINADLIVTNPGIA-------LASPQLKPAIDKGIKIVGDIEL 101

Query: 163 SSWSAS*PVL 134
            +W+ + PV+
Sbjct: 102 FAWAVNAPVI 111

>TERT_ORYSA (Q8LKW0) Telomerase reverse transcriptase (EC 2.7.7.49) (OsTERT)|
          Length = 1261

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = -2

Query: 371 LPASWPCRLPAPACRRSLP----ACRRW 300
           LP+   C  P PACR  +     ACRRW
Sbjct: 39  LPSPRHCESPCPACRGRVASGCLACRRW 66

>MUTL_THEAQ (P96082) DNA mismatch repair protein mutL|
          Length = 533

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = -2

Query: 380 PRPLPASWPCRLPAPACRRSLPACRRWAASASS 282
           PRPLPA  P   P PAC    P C  WA    S
Sbjct: 323 PRPLPALRP--PPLPAC----PPCATWATFRES 349

>LARP1_HUMAN (Q6PKG0) La-related protein 1 (La ribonucleoprotein domain family|
           member 1)
          Length = 1096

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 131 PKHRLASRPAAPPEP 175
           P+ +LASRP  PPEP
Sbjct: 264 PREKLASRPTRPPEP 278

>SWR1_EMENI (Q5ARK3) Helicase swr1 (EC 3.6.1.-)|
          Length = 1656

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 107 RGGVQGGRPKHRLASRPAAPPEPMAGAD 190
           R  V G  P  R  SR A+PP   AGAD
Sbjct: 61  RRKVAGSTPSRRSHSRAASPPWKKAGAD 88

>FOXQ1_HUMAN (Q9C009) Forkhead box protein Q1 (Hepatocyte nuclear factor 3|
           forkhead homolog 1) (HNF-3/forkhead-like protein 1)
           (HFH-1)
          Length = 403

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 374 PLPASWPCRLPAPACRRSLPAC 309
           PLPA +P  LPA  CR  LP C
Sbjct: 304 PLPA-FPALLPAAPCRALLPLC 324

>CHEB1_PSEPU (O52262) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 374

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 383 RPRPLPASWPCRLPAPACRRSLPACRRWAASA 288
           RP P+ A  P   PAPA   + PA  R AA+A
Sbjct: 141 RPAPVAAPVPASSPAPASSFASPAPARPAATA 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,452,212
Number of Sequences: 219361
Number of extensions: 661202
Number of successful extensions: 2937
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2926
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)