ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet22d09 |
|---|---|
| Clone Library Name | barley_pub |
>PSAH_HORVU (P20143) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 143 Score = 146 bits (368), Expect = 1e-35 Identities = 74/98 (75%), Positives = 74/98 (75%) Frame = +2 Query: 53 MASLVAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFDLD 232 MASLVAVQPAAVKGLSGSSISGRKL KYGEKSVYFDLD Sbjct: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLD 60 Query: 233 DIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKR 346 DIANTTGQWDLYGSDA SPYNGLQSKFFNTFAAPFTKR Sbjct: 61 DIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKR 98
>PSAH_ORYSA (P22181) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein) Length = 142 Score = 124 bits (311), Expect = 5e-29 Identities = 66/98 (67%), Positives = 68/98 (69%) Frame = +2 Query: 53 MASLVAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFDLD 232 MASLVAVQP AVKGL+GSSISGRKL KYGEKSVYFDL+ Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVA-KYGEKSVYFDLE 59 Query: 233 DIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKR 346 DI NTTGQWDLY SDA SPYN LQSKFF TFA PFTKR Sbjct: 60 DIGNTTGQWDLYASDAPSPYNPLQSKFFETFAGPFTKR 97
>PSAH_MAIZE (O65101) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 142 Score = 121 bits (304), Expect = 4e-28 Identities = 65/100 (65%), Positives = 70/100 (70%), Gaps = 2/100 (2%) Frame = +2 Query: 53 MASL--VAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226 MASL V+V+P A+KGL+GSSISGRKL KYG+KSVYFD Sbjct: 1 MASLAAVSVKPVAIKGLAGSSISGRKLAVARPSARSIRRPRAAAVVA---KYGDKSVYFD 57 Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKR 346 LDDI NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 58 LDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKR 97
>PSAH_SPIOL (P22179) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 144 Score = 118 bits (296), Expect = 3e-27 Identities = 60/99 (60%), Positives = 69/99 (69%) Frame = +2 Query: 50 AMASLVAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFDL 229 ++A+L AVQP +KGL+GSSI+G KL KYG+KSVYFDL Sbjct: 3 SLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVA--KYGDKSVYFDL 60 Query: 230 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKR 346 +DIANTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 61 EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKR 99
>PSAH2_ARATH (Q9SUI6) Photosystem I reaction center subunit VI-2, chloroplast| precursor (PSI-H1) Length = 145 Score = 113 bits (283), Expect = 1e-25 Identities = 59/100 (59%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Frame = +2 Query: 50 AMASLVAVQP-AAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226 + A++ AVQP AAVKGL GSS++G KL KYG+KSVYFD Sbjct: 3 SFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVA--KYGDKSVYFD 60 Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKR 346 L+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKR 100
>PSAH_BRARA (O04006) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 145 Score = 112 bits (281), Expect = 2e-25 Identities = 59/100 (59%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Frame = +2 Query: 50 AMASLVAVQP-AAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226 + A++ AVQP +AVKGL GSS++G KL KYG+KSVYFD Sbjct: 3 SFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVA--KYGDKSVYFD 60 Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKR 346 L+D+ NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 61 LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKR 100
>PSAH1_ARATH (Q9SUI7) Photosystem I reaction center subunit VI-1, chloroplast| precursor (PSI-H1) Length = 145 Score = 110 bits (276), Expect = 6e-25 Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Frame = +2 Query: 50 AMASLVAVQP-AAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226 ++A++ AV+P AA+KGL GSS++G KL KYG+KSVYFD Sbjct: 3 SLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVA--KYGDKSVYFD 60 Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKR 346 L+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKR 100
>PSAH_PEA (P20121) Photosystem I reaction center subunit VI (PSI-H)| (Light-harvesting complex I 11 kDa protein) (Fragment) Length = 36 Score = 69.7 bits (169), Expect = 2e-12 Identities = 30/36 (83%), Positives = 33/36 (91%) Frame = +2 Query: 197 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQ 304 KYG+KSVYFDL+DI NTTGQWDLYGSDA SPY+ LQ Sbjct: 1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36
>PSAH_CHLRE (P13352) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (P28 protein) Length = 130 Score = 55.1 bits (131), Expect = 4e-08 Identities = 24/40 (60%), Positives = 27/40 (67%) Frame = +2 Query: 197 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFF 316 KYGE S YFDL D+ NTTG WD+YG D Y Q+KFF Sbjct: 31 KYGENSRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFF 70
>PSAH_CUCSA (P42050) Photosystem I reaction center subunit VI, chloroplast| (PSI-H) (Photosystem I 7.6 kDa protein) (PS I subunit 9B) (Fragment) Length = 24 Score = 33.1 bits (74), Expect = 0.16 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = +2 Query: 200 YGEKSVYFDLDDIANTTGQWDLY 268 Y +KSVYFDL+D NT GQ Y Sbjct: 2 YXDKSVYFDLEDKGNTXGQXXXY 24
>GP33_BPSP1 (P06226) Gene 33 protein| Length = 101 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +2 Query: 224 DLDDIANTTGQWDLYGSDAASPYNGLQSKF 313 +L+ + N T +D+Y S+A + GL++KF Sbjct: 7 ELEKVRNHTEDYDVYNSEAERTFRGLKAKF 36
>YBGQ_ECOLI (P75750) Hypothetical outer membrane usher protein ybgQ precursor| Length = 815 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +2 Query: 242 NTTGQWDLYGSDAASPYNGLQSKFFNTFAA 331 ++ G+WD+ G+ AAS Y+ + S + +F A Sbjct: 614 SSAGEWDISGTYAASDYSSVSSSWSGSFTA 643
>SPIB_PALPA (Q9I8M6) Transcription factor Spi-B-like| Length = 265 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 273 LPYRSHCPVVLAMSSRSKYTLFSP 202 LP SHCPV+ YTL+SP Sbjct: 98 LPAPSHCPVLPEEYGAQPYTLYSP 121
>PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)| Length = 623 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = +1 Query: 229 GRHRQHDGAVGPVRQRRGVALQRPAEQVLQHLRRALHQAR----PAAQVPAHR 375 G H H +Q++ + LQ P +Q QH ++ Q + +AQ+P HR Sbjct: 95 GLHSHHTMQQQLQQQQQSLLLQHPQQQQQQHSHQSQQQQQHGYGSSAQLPHHR 147
>RPOC_THEMA (P36252) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1690 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = -1 Query: 348 PRLVKGAAKVLKNLLCRPL*GDAASLPYRSHCPVVLAMSSRSKYTLFSPY 199 P+LV+G A L ++C P D H P+ A + +++ + S Y Sbjct: 732 PKLVEGNAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLSRY 781 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,354,873 Number of Sequences: 219361 Number of extensions: 402416 Number of successful extensions: 1687 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1646 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1681 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
