ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet22c02 |
|---|---|
| Clone Library Name | barley_pub |
>LP61_EIMTE (P15714) Antigen LPMC-61 (Fragment)| Length = 255 Score = 32.0 bits (71), Expect = 0.70 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -3 Query: 321 EEWRQDLQEPWLELDRQQQEDMLVTQKWPHPPQAQAARMVP 199 ++ +Q LQ+ W E +QQQ+ Q+WP P+ Q + P Sbjct: 131 QQQQQQLQQQWSEQQQQQQQ-----QQWPEQPEQQQQQQWP 166 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = -3 Query: 345 MALLAVSQEEW----RQDLQEPWLELDRQQQE--DMLVTQKWPHPPQAQ 217 + LL Q+ W +Q +PWL+ +QQQ+ L Q+WP + Q Sbjct: 8 LLLLLGQQKHWPERQQQQQPQPWLDRQQQQQQHNQQLQKQQWPEGQRQQ 56
>TRPV1_MOUSE (Q704Y3) Transient receptor potential cation channel subfamily V| member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1) (Vanilloid receptor 1) Length = 839 Score = 32.0 bits (71), Expect = 0.70 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Frame = -3 Query: 297 EPWLELDRQQQEDMLVTQKWPHPPQAQAARMVPLRSPNIF*ARETPDLRYGEGTTEETAV 118 E W LD + E P PP P P+IF R L +G+G +EE + Sbjct: 2 EKWASLDSDESEPPAQENSCPDPPDRDPNSKPPPAKPHIFATRSRTRL-FGKGDSEEASP 60 Query: 117 --AVVAKGSLSRC 85 +G L+ C Sbjct: 61 MDCPYEEGGLASC 73
>KC11_YEAST (P23291) Casein kinase I homolog 1 (EC 2.7.11.1)| Length = 538 Score = 31.6 bits (70), Expect = 0.91 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Frame = -3 Query: 324 QEEWRQDLQEPWLELDRQQQEDMLVTQKWPHPPQAQ------AARMVPLRSPNIF*ARET 163 Q+ Q LQE L+ +QQQ+ + T + P PQAQ AR P + P+ A T Sbjct: 455 QKLQEQQLQEQQLQQQQQQQQQLRATGQPPSQPQAQTQSQQFGARYQPQQQPSA--ALRT 512 Query: 162 PD 157 P+ Sbjct: 513 PE 514
>TRPV1_RABIT (Q6RX08) Transient receptor potential cation channel subfamily V| member 1 (TrpV1) (osm-9-like TRP channel 1) (OTRPC1) (Vanilloid receptor 1) Length = 842 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = -3 Query: 291 WLELDRQQQEDMLVTQKWPHPPQAQAARMVPLRSPNIF*ARETPDLRYGEGTTEETA 121 W+ LD + ED L P + P P+IF ++ +G+G +EET+ Sbjct: 4 WVSLDSGESEDPLPEDTCPDLLDGDSNAKPPPAKPHIFSTAKSRSRLFGKGDSEETS 60
>BPAEB_MOUSE (Q60824) Bullous pemphigoid antigen 1, isoforms 6/7 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragments) Length = 1678 Score = 29.3 bits (64), Expect = 4.5 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Frame = -3 Query: 288 LELDRQQQEDMLVTQKWPHPPQAQAARMVPLRSPNIF*ARETPDLRYGE---GTTEETAV 118 L L R QE KWPH Q + V R P RE+ Y E T+ E + Sbjct: 938 LPLSRWTQEPHQTEGKWPHRAAEQLPKEVQFRQPGAPLDRESSQPCYSEYFSQTSTELQI 997 Query: 117 AVVAKGSLSRCS 82 K ++R S Sbjct: 998 TFDDKNPITRLS 1009
>BPAEA_MOUSE (Q91ZU8) Bullous pemphigoid antigen 1, isoform 5 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 2611 Score = 29.3 bits (64), Expect = 4.5 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Frame = -3 Query: 288 LELDRQQQEDMLVTQKWPHPPQAQAARMVPLRSPNIF*ARETPDLRYGE---GTTEETAV 118 L L R QE KWPH Q + V R P RE+ Y E T+ E + Sbjct: 1871 LPLSRWTQEPHQTEGKWPHRAAEQLPKEVQFRQPGAPLDRESSQPCYSEYFSQTSTELQI 1930 Query: 117 AVVAKGSLSRCS 82 K ++R S Sbjct: 1931 TFDDKNPITRLS 1942
>WDR74_HUMAN (Q6RFH5) WD-repeat protein 74 (NOP seven-associated protein 1)| Length = 385 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/70 (28%), Positives = 30/70 (42%) Frame = -3 Query: 396 VGNPVGAEH*VELD*RGMALLAVSQEEWRQDLQEPWLELDRQQQEDMLVTQKWPHPPQAQ 217 + NP G EH V L + LL ++ W + QEP E ++ ED + W A Sbjct: 298 IQNPRGLEHKVYLKSQLNCLLLSGRDNWEDEPQEP-QEPNKVPLEDTETDELWASLEAAA 356 Query: 216 AARMVPLRSP 187 ++ L P Sbjct: 357 KRKLSGLEQP 366
>WDR74_BOVIN (Q58D06) WD-repeat protein 74| Length = 385 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = -3 Query: 396 VGNPVGAEH*VELD*RGMALLAVSQEEWRQDLQEPWLELDRQQQEDMLVTQKWPHPPQAQ 217 + NP G EH V L + LL ++ W + QEP E ++ ED + W +A Sbjct: 298 IRNPRGLEHKVYLKSQLNCLLLSGRDNWEDEPQEP-QEPNKVPSEDTETDELWA-SLEAA 355 Query: 216 AARMVP 199 A R +P Sbjct: 356 AKRKLP 361
>SEC65_DEBHA (Q6BM93) Signal recognition particle SEC65 subunit| Length = 269 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/49 (26%), Positives = 25/49 (51%) Frame = -3 Query: 297 EPWLELDRQQQEDMLVTQKWPHPPQAQAARMVPLRSPNIF*ARETPDLR 151 +P ++ R Q ++ + +PHP Q ++ + PN F A E +L+ Sbjct: 37 QPGPQITRSQDQEPPLFPNFPHPEQDKSVERKDIVDPNKFSAEERAELK 85
>WDR74_MOUSE (Q8VCG3) WD-repeat protein 74| Length = 384 Score = 28.9 bits (63), Expect = 5.9 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = -3 Query: 396 VGNPVGAEH*VELD*RGMALLAVSQEEWRQDLQEPWLELDRQQQEDMLVTQKWPHPPQAQ 217 + NP G EH V L + LL ++ W + QEP E ++ ED + W +A Sbjct: 298 IRNPRGLEHKVYLKSQLNCLLLSGRDNWEDEPQEP-QEPNQVPSEDTETDELWA-SLEAA 355 Query: 216 AARMVP 199 A R +P Sbjct: 356 AKRKLP 361
>PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (mPH1) (Early development| regulatory protein 1) (RAE-28) Length = 1012 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -3 Query: 339 LLAVSQEEWRQDLQEPWLELDRQQQEDMLVTQKWPHPPQAQAARMVP 199 L Q++ +Q Q+ + +QQQ+ T P PPQ + VP Sbjct: 421 LQLAQQQQQQQQQQQQQQQQQQQQQQQQGTTLTAPQPPQVPPTQQVP 467 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,501,392 Number of Sequences: 219361 Number of extensions: 681854 Number of successful extensions: 2147 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2067 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2143 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
