ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet22a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7 33 0.45
2APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRN... 29 6.4

>COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7|
          Length = 392

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -3

Query: 192 ESR*DSGTAEEMEAKKGDSSGSRSRCGA*LSHRLHAWWCPSVNSFKFQPCD 40
           ESR  S T E+M A+  D+   RSR          +W+CP+ ++F  Q CD
Sbjct: 6   ESRTASVTGEKMAARGCDACMKRSRA---------SWYCPADDAFLCQSCD 47



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>APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRNA|
           intron-encoded homing endonuclease 1)
          Length = 222

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 7   KSKSLGS--GGSMVARLKLKGIDGRAPPGVEP 96
           KSK L    G  +    KLKGI G AP GVEP
Sbjct: 189 KSKKLNELLGRPLPGPSKLKGIGGGAPQGVEP 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,751,275
Number of Sequences: 219361
Number of extensions: 617244
Number of successful extensions: 1256
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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