| Clone Name | baet21h10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC127169.13| Medicago truncatula clone mth2-36n3, complete sequence Length = 124554 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Plus Query: 260 attgcaaagtggaacattctttt 282 ||||||||||||||||||||||| Sbjct: 113936 attgcaaagtggaacattctttt 113958
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 129 agagattacaaattgcaagtcg 150 |||||||||||||||||||||| Sbjct: 984472 agagattacaaattgcaagtcg 984493
>gb|AC155328.5| Mus musculus 6 BAC RP24-75K10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 216930 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 caaatagaatcagagactacaa 370 |||||||||||||||||||||| Sbjct: 58225 caaatagaatcagagactacaa 58204
>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1217_F02 Length = 118822 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 129 agagattacaaattgcaagtcg 150 |||||||||||||||||||||| Sbjct: 55891 agagattacaaattgcaagtcg 55912
>gb|DQ068068.1| Uncultured bacterium BAC17H8, complete sequence Length = 135294 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 aagctgcttctgatgaagctg 55 ||||||||||||||||||||| Sbjct: 65897 aagctgcttctgatgaagctg 65877
>emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6, complete sequence Length = 147211 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 acattcttttgaagagtctgg 293 ||||||||||||||||||||| Sbjct: 82152 acattcttttgaagagtctgg 82132
>gb|AC119266.14| Mus musculus chromosome 13, clone RP24-321G8, complete sequence Length = 174035 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 agaaagcagccaagatgctaagcc 209 |||||||||||||||||| ||||| Sbjct: 44503 agaaagcagccaagatgcaaagcc 44526
>gb|AC095999.8| Rattus norvegicus 4 BAC CH230-12B2 (Children's Hospital Oakland Research Institute) complete sequence Length = 217673 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 actgcccaagaaagcagcca 314 |||||||||||||||||||| Sbjct: 210887 actgcccaagaaagcagcca 210868
>ref|XM_419397.1| PREDICTED: Gallus gallus similar to 0610010K06Rik protein (LOC421334), mRNA Length = 1901 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 caagatgctaagcctgtatg 215 |||||||||||||||||||| Sbjct: 1773 caagatgctaagcctgtatg 1754
>ref|XM_462202.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G16236g) partial mRNA Length = 1461 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tgtatgtgttgatgctgctg 229 |||||||||||||||||||| Sbjct: 305 tgtatgtgttgatgctgctg 286
>gb|BC070538.1| Xenopus laevis RAP2B, member of RAS oncogene family, mRNA (cDNA clone MGC:78857 IMAGE:3403126), complete cds Length = 2393 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cagccagagattacaaattg 143 |||||||||||||||||||| Sbjct: 2137 cagccagagattacaaattg 2156
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence Length = 152544 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tgctgctgctgaaatcgaac 121 |||||||||||||||||||| Sbjct: 129940 tgctgctgctgaaatcgaac 129921
>gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, complete sequence Length = 131790 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tgctgctgctgaaatcgaac 121 |||||||||||||||||||| Sbjct: 51627 tgctgctgctgaaatcgaac 51646 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tgctgctgctgaaatcgaac 121 |||||||||||||||||||| Sbjct: 14367 tgctgctgctgaaatcgaac 14348
>gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, complete sequence Length = 101981 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tgctgctgctgaaatcgaac 121 |||||||||||||||||||| Sbjct: 80749 tgctgctgctgaaatcgaac 80730
>gb|AC124717.3| Mus musculus BAC clone RP24-147K15 from chromosome 18, complete sequence Length = 204165 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 cctgtatgtgttgatgctgctgct 231 |||||| ||||||||||||||||| Sbjct: 145153 cctgtaggtgttgatgctgctgct 145130
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gcaaagtggaacattctttt 282 |||||||||||||||||||| Sbjct: 6069969 gcaaagtggaacattctttt 6069950
>gb|AY518539.1| Homo sapiens insulin-like growth factor binding protein 7 (IGFBP7) gene, complete cds Length = 82343 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgctgctgctgaaatggaac 241 |||||||||||||||||||| Sbjct: 46688 tgctgctgctgaaatggaac 46707
>gb|AY184811.1| Carassius auratus H1 histone mRNA, complete cds Length = 584 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 gcccaagaaagcagccaaga 200 |||||||||||||||||||| Sbjct: 511 gcccaagaaagcagccaaga 530 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gcccaagaaagcagccaaga 317 |||||||||||||||||||| Sbjct: 511 gcccaagaaagcagccaaga 530
>gb|AC183606.2| Pan troglodytes BAC clone CH251-286M5 from chromosome 12, complete sequence Length = 171738 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 agagatagaggttgcaaatt 262 |||||||||||||||||||| Sbjct: 14613 agagatagaggttgcaaatt 14594
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 tgtatgtgttgatgctgctg 229 |||||||||||||||||||| Sbjct: 1237070 tgtatgtgttgatgctgctg 1237089
>gb|AC161258.2| Mus musculus BAC clone RP23-457H24 from chromosome 17, complete sequence Length = 201842 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 catgcaatttggaagctgct 42 |||||||||||||||||||| Sbjct: 165826 catgcaatttggaagctgct 165845
>gb|AC027667.20| Homo sapiens 12 BAC RP11-972L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157801 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 agagatagaggttgcaaatt 262 |||||||||||||||||||| Sbjct: 19978 agagatagaggttgcaaatt 19959
>gb|AC010210.24| Homo sapiens 3 BAC RP11-933H2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152823 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 atgctgctgctgaaatggaa 240 |||||||||||||||||||| Sbjct: 15555 atgctgctgctgaaatggaa 15574
>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence Length = 203474 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tgctgctgctgaaatggaac 241 |||||||||||||||||||| Sbjct: 179548 tgctgctgctgaaatggaac 179529
>gb|AC074254.4| Homo sapiens BAC clone RP11-784D7 from 4, complete sequence Length = 171073 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aatttggaagctgcttctga 47 |||||||||||||||||||| Sbjct: 123531 aatttggaagctgcttctga 123512
>ref|XM_686790.1| PREDICTED: Danio rerio similar to Histone H1.5 (Histone H1a) (LOC563431), mRNA Length = 606 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gcccaagaaagcagccaaga 317 |||||||||||||||||||| Sbjct: 312 gcccaagaaagcagccaaga 331 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 gcccaagaaagcagccaaga 200 |||||||||||||||||||| Sbjct: 312 gcccaagaaagcagccaaga 331
>gb|BC097183.1| Danio rerio heterogeneous nuclear ribonucleoprotein A/B, mRNA (cDNA clone MGC:114125 IMAGE:7451040), complete cds Length = 2597 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gcccaagaaagcagccaaga 317 |||||||||||||||||||| Sbjct: 355 gcccaagaaagcagccaaga 374 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 gcccaagaaagcagccaaga 200 |||||||||||||||||||| Sbjct: 355 gcccaagaaagcagccaaga 374
>gb|AY196987.1| Medicago sativa retrotransposon MIRE1, complete sequence Length = 13561 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 gaagctgcttctgatgaagc 53 |||||||||||||||||||| Sbjct: 5897 gaagctgcttctgatgaagc 5916
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gcaaagtggaacattctttt 282 |||||||||||||||||||| Sbjct: 6069182 gcaaagtggaacattctttt 6069163
>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11, complete sequence Length = 174865 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gcaaagtggaacattctttt 282 |||||||||||||||||||| Sbjct: 63445 gcaaagtggaacattctttt 63426
>emb|BX950301.1| Gallus gallus finished cDNA, clone ChEST901m22 Length = 1902 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 caagatgctaagcctgtatg 215 |||||||||||||||||||| Sbjct: 1771 caagatgctaagcctgtatg 1752
>gb|AC134729.2| Homo sapiens 3 BAC RP11-671L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155733 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ccaagaaagcagccaggaag 82 |||||||||||||||||||| Sbjct: 81667 ccaagaaagcagccaggaag 81686
>gb|AC084357.23| Homo sapiens 12q BAC RP11-415I12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188527 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 agagatagaggttgcaaatt 262 |||||||||||||||||||| Sbjct: 129376 agagatagaggttgcaaatt 129395
>gb|AC160991.3| Mus musculus BAC clone RP23-187D8 from chromosome 13, complete sequence Length = 186863 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 agaaagcagccaagatgctaagcc 209 |||||||||||||||||| ||||| Sbjct: 171598 agaaagcagccaagatgcaaagcc 171621
>emb|BX005277.11| Zebrafish DNA sequence from clone CH211-167H2, complete sequence Length = 137475 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 tgtgttgatgctgctgctga 233 |||||||||||||||||||| Sbjct: 44593 tgtgttgatgctgctgctga 44574 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tgtgttgatgctgctgctga 113 |||||||||||||||||||| Sbjct: 44593 tgtgttgatgctgctgctga 44574
>emb|BX648756.1|HSM808907 Homo sapiens mRNA; cDNA DKFZp686B20109 (from clone DKFZp686B20109) Length = 8794 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgctgctgctgaaatggaac 241 |||||||||||||||||||| Sbjct: 109 tgctgctgctgaaatggaac 128
>emb|BX511097.21| Zebrafish DNA sequence from clone DKEYP-93C5 in linkage group 2, complete sequence Length = 134883 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tgctaagcctgtatgtgttg 220 |||||||||||||||||||| Sbjct: 82893 tgctaagcctgtatgtgttg 82912
>ref|NM_212587.2| Danio rerio heterogeneous nuclear ribonucleoprotein A/B (hnrpab), mRNA Length = 2597 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gcccaagaaagcagccaaga 317 |||||||||||||||||||| Sbjct: 355 gcccaagaaagcagccaaga 374 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 gcccaagaaagcagccaaga 200 |||||||||||||||||||| Sbjct: 355 gcccaagaaagcagccaaga 374
>gb|AC147899.2| Xenopus tropicalis clone CH216-53A2, complete sequence Length = 158405 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 tgttgatgctgctgctgaaa 235 |||||||||||||||||||| Sbjct: 63003 tgttgatgctgctgctgaaa 63022 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tgttgatgctgctgctgaaa 115 |||||||||||||||||||| Sbjct: 63003 tgttgatgctgctgctgaaa 63022 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,261,516 Number of Sequences: 3902068 Number of extensions: 5261516 Number of successful extensions: 111358 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111091 Number of HSP's gapped (non-prelim): 267 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)