ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet21h06 |
|---|---|
| Clone Library Name | barley_pub |
>MAEL_BOVIN (Q32KV2) Maelstrom homolog| Length = 420 Score = 33.1 bits (74), Expect = 0.31 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 9/77 (11%) Frame = +3 Query: 198 EVDEDEAMSIDNLCRFFDLNVGKWNGIFYQFDAHGRV---------QQEISTRLSASTYG 350 E D+A I+NL RF N G W I+ + D RV EI L T Sbjct: 173 ESGHDQATVIENLYRFIHPNPGNWPPIYCKSDDRARVNWCLKHMAKSSEIRQDLELLTV- 231 Query: 351 EDDLISLMQSLYIKQAS 401 ED ++ + Q ++K+ S Sbjct: 232 EDLVVGIYQQKFLKEPS 248
>MAEL_MOUSE (Q8BVN9) Maelstrom homolog| Length = 434 Score = 30.8 bits (68), Expect = 1.6 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Frame = +3 Query: 198 EVDEDEAMSIDNLCRFFDLNVGKWNGIFYQFDAHGRVQ---------QEISTRLSASTYG 350 E D+A + NL +F N G W I+ + D RV EI L T Sbjct: 187 EFGHDQATVLQNLYKFIHPNPGNWPPIYCKSDDRARVNWCLKRMERASEIRQDLELLTV- 245 Query: 351 EDDLISLMQSLYIKQAS 401 ED ++ + Q ++K+ S Sbjct: 246 EDLVVGIYQQKFLKEPS 262
>ZN597_HUMAN (Q96LX8) Zinc finger protein 597| Length = 424 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/49 (24%), Positives = 26/49 (53%) Frame = +2 Query: 260 RQVERHLLPIRCAREGATGDQHAAVRQHVRGGRPHQPHAIAVYQAGFVW 406 R++ P +CA+ A+ QH+ + +H+ +P+ ++ GF+W Sbjct: 203 RRIHTGEKPYKCAKCSASFRQHSHLSRHMNSHVKEKPYTCSICGRGFMW 251
>DOS_HUMAN (Q8N350) Protein Dos| Length = 725 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +1 Query: 1 LA*HPSPPASLLWPWRKPSRASG---WPPPRSRIHGAADAPALP 123 LA P+PPA P R P R PP + GA D PA+P Sbjct: 618 LAGTPAPPAGAARPARAPLRRGDSVDGPPDGRTLGGAGDDPAIP 661
>KCNKG_HUMAN (Q96T55) Potassium channel subfamily K member 16 (TWIK-related| alkaline pH-activated K(+) channel 1) (2P domain potassium channel Talk-1) Length = 309 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -1 Query: 103 LLRGCGTAEAASRRPARVSAMARGVK 26 L +GCG A RRP R S ARGV+ Sbjct: 269 LRQGCGAKAAPGRRPRRGSTAARGVQ 294
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 13 PSPPASLLWPWRKPSRASGW-PPPRSRIHGAADAPALPRRP 132 P PP P P+R G PPP SR AA P P RP Sbjct: 290 PPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRP 330
>HXC5_MOUSE (P32043) Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2)| Length = 222 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +3 Query: 15 LSSRFTPLAMAETLAGLRLAASAVPHPRSSGRPCAAAPAH 134 LS F P A + +L G+ +AA+ HP AAAP H Sbjct: 45 LSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGH 84
>HXC5_HUMAN (Q00444) Homeobox protein Hox-C5 (Hox-3D) (CP11)| Length = 222 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +3 Query: 15 LSSRFTPLAMAETLAGLRLAASAVPHPRSSGRPCAAAPAH 134 LS F P A + +L G+ +AA+ HP AAAP H Sbjct: 45 LSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGH 84
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 13 PSPPASLLWPWRKPSRASGW-PPPRSRIHGAADAPALPRRP 132 P PP P P+R G PPP SR AA P P RP Sbjct: 287 PPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRP 327
>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 13 PSPPASLLWPWRKPSRASGW-PPPRSRIHGAADAPALPRRP 132 P PP P P+R G PPP SR AA P P RP Sbjct: 287 PPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRP 327
>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 13 PSPPASLLWPWRKPSRASGW-PPPRSRIHGAADAPALPRRP 132 P PP P P+R G PPP SR AA P P RP Sbjct: 290 PPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRP 330
>GCH1_RAT (P22288) GTP cyclohydrolase I precursor (EC 3.5.4.16) (GTP-CH-I)| Length = 241 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 96 RSSGRPCAAAPAHHRLPQLRRGRLCARAAVTGAPEVDEDEAMSIDNL 236 R RP A+ PA P +G A A G P +ED +++ NL Sbjct: 16 RELPRPGASRPAEKSRPPEAKGAQPADAWKAGRPRSEEDNELNLPNL 62
>MURA_BORPA (Q7W2Y6) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 422 Score = 28.5 bits (62), Expect = 7.7 Identities = 29/114 (25%), Positives = 39/114 (34%), Gaps = 8/114 (7%) Frame = +3 Query: 105 GRPCAAAPAHHRLP--------QLRRGRLCARAAVTGAPEVDEDEAMSIDNLCRFFDLNV 260 GRPCA H P QL A + E+ M + LCR Sbjct: 287 GRPCAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCRL----- 341 Query: 261 GKWNGIFYQFDAHGRVQQEISTRLSASTYGEDDLISLMQSLYIKQASSGITFAD 422 G D H V + ++ RLS +T DL + + A+ G T D Sbjct: 342 ----GADIDIDGHTAVVRGVA-RLSGATVMATDLRASASLVIAGLAAEGETLVD 390
>GPDA_SYMTH (Q67NS7) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 342 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Frame = +2 Query: 245 LRPQCRQVERHLLP---IRCAREGATGDQHAAVRQHVRGGRP-HQPHAIAVYQAGF 400 LRP CR V HL P I CA + + H V Q V P H+ +A+ F Sbjct: 80 LRPVCRLVRPHLRPDAVIVCATKSIEPETHLLVHQVVEEELPGHRGRIVALSGPNF 135
>COAE_WOLSU (Q7M7Q5) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 201 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -3 Query: 371 EADEVVLPVRAGGQP----RADLLLHPPVRIELVEDAVPL 264 E D L R G P R + LLHPP+R E+++ A L Sbjct: 63 EIDRKSLGARVFGDPKERARLEALLHPPIRQEILQKAQKL 102
>XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonuclease 2)| (Exonuclease II) (Exo II) (p140) Length = 1328 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Frame = +1 Query: 13 PSPPASLLWPWR----KPSRASGWPPPRSRIH 96 PSPP+S +W R KP PPP S IH Sbjct: 1244 PSPPSSSVWNKREHHPKPFSLHQVPPPESLIH 1275 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,655,982 Number of Sequences: 219361 Number of extensions: 938742 Number of successful extensions: 4094 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4086 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
