ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet21h06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469842.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 252 bits (127), Expect = 8e-64 Identities = 247/287 (86%) Strand = Plus / Plus Query: 151 tccggcgcggccggctctgcgcccgggcggccgtcacgggcgcgccggaggtggacgagg 210 |||| |||||| |||||||||| ||||| || || | ||| |||||||||||||||| | Sbjct: 128 tccgccgcggcaggctctgcgcgcgggccgcggtggccggcccgccggaggtggacgacg 187 Query: 211 acgaggccatgagcatcgacaacctctgccgcttcttcgacctcaatgtcggcaagtgga 270 |||| || |||| ||||||||| ||| |||||||||||||| |||| ||||||||||||| Sbjct: 188 acgacgcgatgaccatcgacaatctccgccgcttcttcgacgtcaacgtcggcaagtgga 247 Query: 271 acggcatcttctaccaattcgatgcgcacgggagggtgcaacaggagatcagcacgcggc 330 | || ||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 248 atggagcattctaccaattcgatgcgcacgggagggtgctgcaggggatcagcacgcggc 307 Query: 331 tgtccgccagcacgtacggggaggacgacctcatcagcctcatgcaatcgctgtatatca 390 |||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 308 tgtcagtgagcacctacggggaggacgacctcatcagcctcctgcaatcgctgtatatca 367 Query: 391 agcaggcttcgtctgggataacattcgcagacgaggaggatcctgaa 437 |||| ||||| ||| |||| | || | ||| ||||||||| ||||| Sbjct: 368 agcaagcttcttctcagatatcgtttgtagatgaggaggattctgaa 414
>gb|AY341852.1| Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds Length = 3276 Score = 161 bits (81), Expect = 2e-36 Identities = 135/153 (88%) Strand = Plus / Plus Query: 285 caattcgatgcgcacgggagggtgcaacaggagatcagcacgcggctgtccgccagcacg 344 ||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||| Sbjct: 451 caattcgatgcgcacgggagggtgctgcaggggatcagcacgcggctgtcagtgagcacc 510 Query: 345 tacggggaggacgacctcatcagcctcatgcaatcgctgtatatcaagcaggcttcgtct 404 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| Sbjct: 511 tacggggaggacgacctcatcagcctcctgcaatcgctgtatatcaagcaagcttcttct 570 Query: 405 gggataacattcgcagacgaggaggatcctgaa 437 |||| | || | ||| ||||||||| ||||| Sbjct: 571 cagatatcgtttgtagatgaggaggattctgaa 603 Score = 105 bits (53), Expect = 1e-19 Identities = 104/121 (85%) Strand = Plus / Plus Query: 151 tccggcgcggccggctctgcgcccgggcggccgtcacgggcgcgccggaggtggacgagg 210 |||| |||||| |||||||||| ||||| || || | ||| |||||||||||||||| | Sbjct: 200 tccgccgcggcaggctctgcgcgcgggccgcggtggccggcccgccggaggtggacgacg 259 Query: 211 acgaggccatgagcatcgacaacctctgccgcttcttcgacctcaatgtcggcaagtgga 270 |||| || |||| ||||||||| ||| |||||||||||||| |||| ||||||||||||| Sbjct: 260 acgacgcgatgaccatcgacaatctccgccgcttcttcgacgtcaacgtcggcaagtgga 319 Query: 271 a 271 | Sbjct: 320 a 320
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 127 bits (64), Expect = 3e-26 Identities = 88/96 (91%) Strand = Plus / Plus Query: 285 caattcgatgcgcacgggagggtgcaacaggagatcagcacgcggctgtccgccagcacg 344 ||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||| Sbjct: 31087940 caattcgatgcgcacgggagggtgctgcaggggatcagcacgcggctgtcagtgagcacc 31087999 Query: 345 tacggggaggacgacctcatcagcctcatgcaatcg 380 ||||||||||||||||||||||||||| |||||||| Sbjct: 31088000 tacggggaggacgacctcatcagcctcctgcaatcg 31088035 Score = 105 bits (53), Expect = 1e-19 Identities = 104/121 (85%) Strand = Plus / Plus Query: 151 tccggcgcggccggctctgcgcccgggcggccgtcacgggcgcgccggaggtggacgagg 210 |||| |||||| |||||||||| ||||| || || | ||| |||||||||||||||| | Sbjct: 31087667 tccgccgcggcaggctctgcgcgcgggccgcggtggccggcccgccggaggtggacgacg 31087726 Query: 211 acgaggccatgagcatcgacaacctctgccgcttcttcgacctcaatgtcggcaagtgga 270 |||| || |||| ||||||||| ||| |||||||||||||| |||| ||||||||||||| Sbjct: 31087727 acgacgcgatgaccatcgacaatctccgccgcttcttcgacgtcaacgtcggcaagtgga 31087786 Query: 271 a 271 | Sbjct: 31087787 a 31087787
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 127 bits (64), Expect = 3e-26 Identities = 88/96 (91%) Strand = Plus / Minus Query: 285 caattcgatgcgcacgggagggtgcaacaggagatcagcacgcggctgtccgccagcacg 344 ||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||| Sbjct: 8124 caattcgatgcgcacgggagggtgctgcaggggatcagcacgcggctgtcagtgagcacc 8065 Query: 345 tacggggaggacgacctcatcagcctcatgcaatcg 380 ||||||||||||||||||||||||||| |||||||| Sbjct: 8064 tacggggaggacgacctcatcagcctcctgcaatcg 8029 Score = 105 bits (53), Expect = 1e-19 Identities = 104/121 (85%) Strand = Plus / Minus Query: 151 tccggcgcggccggctctgcgcccgggcggccgtcacgggcgcgccggaggtggacgagg 210 |||| |||||| |||||||||| ||||| || || | ||| |||||||||||||||| | Sbjct: 8397 tccgccgcggcaggctctgcgcgcgggccgcggtggccggcccgccggaggtggacgacg 8338 Query: 211 acgaggccatgagcatcgacaacctctgccgcttcttcgacctcaatgtcggcaagtgga 270 |||| || |||| ||||||||| ||| |||||||||||||| |||| ||||||||||||| Sbjct: 8337 acgacgcgatgaccatcgacaatctccgccgcttcttcgacgtcaacgtcggcaagtgga 8278 Query: 271 a 271 | Sbjct: 8277 a 8277
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 127 bits (64), Expect = 3e-26 Identities = 88/96 (91%) Strand = Plus / Plus Query: 285 caattcgatgcgcacgggagggtgcaacaggagatcagcacgcggctgtccgccagcacg 344 ||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||| Sbjct: 8581 caattcgatgcgcacgggagggtgctgcaggggatcagcacgcggctgtcagtgagcacc 8640 Query: 345 tacggggaggacgacctcatcagcctcatgcaatcg 380 ||||||||||||||||||||||||||| |||||||| Sbjct: 8641 tacggggaggacgacctcatcagcctcctgcaatcg 8676 Score = 105 bits (53), Expect = 1e-19 Identities = 104/121 (85%) Strand = Plus / Plus Query: 151 tccggcgcggccggctctgcgcccgggcggccgtcacgggcgcgccggaggtggacgagg 210 |||| |||||| |||||||||| ||||| || || | ||| |||||||||||||||| | Sbjct: 8308 tccgccgcggcaggctctgcgcgcgggccgcggtggccggcccgccggaggtggacgacg 8367 Query: 211 acgaggccatgagcatcgacaacctctgccgcttcttcgacctcaatgtcggcaagtgga 270 |||| || |||| ||||||||| ||| |||||||||||||| |||| ||||||||||||| Sbjct: 8368 acgacgcgatgaccatcgacaatctccgccgcttcttcgacgtcaacgtcggcaagtgga 8427 Query: 271 a 271 | Sbjct: 8428 a 8428
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 127 bits (64), Expect = 3e-26 Identities = 88/96 (91%) Strand = Plus / Plus Query: 285 caattcgatgcgcacgggagggtgcaacaggagatcagcacgcggctgtccgccagcacg 344 ||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||| Sbjct: 31178463 caattcgatgcgcacgggagggtgctgcaggggatcagcacgcggctgtcagtgagcacc 31178522 Query: 345 tacggggaggacgacctcatcagcctcatgcaatcg 380 ||||||||||||||||||||||||||| |||||||| Sbjct: 31178523 tacggggaggacgacctcatcagcctcctgcaatcg 31178558 Score = 105 bits (53), Expect = 1e-19 Identities = 104/121 (85%) Strand = Plus / Plus Query: 151 tccggcgcggccggctctgcgcccgggcggccgtcacgggcgcgccggaggtggacgagg 210 |||| |||||| |||||||||| ||||| || || | ||| |||||||||||||||| | Sbjct: 31178190 tccgccgcggcaggctctgcgcgcgggccgcggtggccggcccgccggaggtggacgacg 31178249 Query: 211 acgaggccatgagcatcgacaacctctgccgcttcttcgacctcaatgtcggcaagtgga 270 |||| || |||| ||||||||| ||| |||||||||||||| |||| ||||||||||||| Sbjct: 31178250 acgacgcgatgaccatcgacaatctccgccgcttcttcgacgtcaacgtcggcaagtgga 31178309 Query: 271 a 271 | Sbjct: 31178310 a 31178310
>ref|XM_481338.1| Oryza sativa (japonica cultivar-group), mRNA Length = 447 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/72 (87%), Gaps = 2/72 (2%) Strand = Plus / Plus Query: 200 ggtggacgaggacgaggccatgagcatcgacaacctctgccgcttcttcgacctcaatgt 259 |||||| ||||||||||| |||||||||||||||||| || ||| |||||| |||| || Sbjct: 141 ggtggatgaggacgaggcgatgagcatcgacaacctccgc--ctttttcgacgtcaacgt 198 Query: 260 cggcaagtggaa 271 || ||||||||| Sbjct: 199 cgacaagtggaa 210
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/72 (87%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 200 ggtggacgaggacgaggccatgagcatcgacaacctctgccgcttcttcgacctcaatgt 259 |||||| ||||||||||| |||||||||||||||||| || ||| |||||| |||| || Sbjct: 11637237 ggtggatgaggacgaggcgatgagcatcgacaacctccgc--ctttttcgacgtcaacgt 11637180 Query: 260 cggcaagtggaa 271 || ||||||||| Sbjct: 11637179 cgacaagtggaa 11637168 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 382 tgtatatcaagcaggcttcgtctgggataacattcgcagacgaggaggatcctgaaccag 441 ||||||||||||| ||||| ||| |||| || | | ||| ||||||||| ||||||||| Sbjct: 11636828 tgtatatcaagcaagcttcttctcagatatcaattgtagatgaggaggattctgaaccag 11636769 Query: 442 a 442 | Sbjct: 11636768 a 11636768
>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0467G09 Length = 158204 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/72 (87%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 200 ggtggacgaggacgaggccatgagcatcgacaacctctgccgcttcttcgacctcaatgt 259 |||||| ||||||||||| |||||||||||||||||| || ||| |||||| |||| || Sbjct: 97508 ggtggatgaggacgaggcgatgagcatcgacaacctccgc--ctttttcgacgtcaacgt 97451 Query: 260 cggcaagtggaa 271 || ||||||||| Sbjct: 97450 cgacaagtggaa 97439 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 382 tgtatatcaagcaggcttcgtctgggataacattcgcagacgaggaggatcctgaaccag 441 ||||||||||||| ||||| ||| |||| || | | ||| ||||||||| ||||||||| Sbjct: 97099 tgtatatcaagcaagcttcttctcagatatcaattgtagatgaggaggattctgaaccag 97040 Query: 442 a 442 | Sbjct: 97039 a 97039
>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome Length = 156789 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 188 gggcgcgccggaggtggacgagg 210 ||||||||||||||||||||||| Sbjct: 152084 gggcgcgccggaggtggacgagg 152106 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 gggcgcgccggaggtggacgagg 210 ||||||||||||||||||||||| Sbjct: 130340 gggcgcgccggaggtggacgagg 130318
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 gagatcagcacgcggctgtccg 336 |||||||||||||||||||||| Sbjct: 23136 gagatcagcacgcggctgtccg 23115
>ref|XM_849326.1| PREDICTED: Canis familiaris similar to lung-inducible neuralized-related C3HC4 RING domain protein (LOC611638), mRNA Length = 912 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 152 ccggcgcggccggctctgcgcc 173 |||||||||||||||||||||| Sbjct: 507 ccggcgcggccggctctgcgcc 528
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 189 ggcgcgccggaggtggacgagg 210 |||||||||||||||||||||| Sbjct: 3276244 ggcgcgccggaggtggacgagg 3276265
>ref|XM_582026.2| PREDICTED: Bos taurus similar to ryanodine receptor 1, skeletal muscle (LOC505697), mRNA Length = 9500 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 gggcgcgccggaggtggacgaggacgagg 216 ||||| |||||||| |||||||||||||| Sbjct: 7011 gggcgagccggaggaggacgaggacgagg 7039
>gb|AC165142.3| Mus musculus BAC clone RP24-484I1 from chromosome 7, complete sequence Length = 165049 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 gggcgcgccggaggtggacgaggacgagg 216 ||||| |||||||| |||||||||||||| Sbjct: 54144 gggcgagccggaggaggacgaggacgagg 54172
>ref|NM_009109.1| Mus musculus ryanodine receptor 1, skeletal muscle (Ryr1), mRNA Length = 15358 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 gggcgcgccggaggtggacgaggacgagg 216 ||||| |||||||| |||||||||||||| Sbjct: 12910 gggcgagccggaggaggacgaggacgagg 12938
>gb|AY268935.1| Mus musculus ryanodine receptor (Ryr1) mRNA, complete cds Length = 15358 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 gggcgcgccggaggtggacgaggacgagg 216 ||||| |||||||| |||||||||||||| Sbjct: 12910 gggcgagccggaggaggacgaggacgagg 12938
>gb|AC164564.3| Mus musculus BAC clone RP23-96N11 from chromosome 7, complete sequence Length = 247415 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 gggcgcgccggaggtggacgaggacgagg 216 ||||| |||||||| |||||||||||||| Sbjct: 238420 gggcgagccggaggaggacgaggacgagg 238448
>emb|X78666.1|MMBRYR1 M.musculus (BALB/c) Ryr1 mRNA Length = 620 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 gggcgcgccggaggtggacgaggacgagg 216 ||||| |||||||| |||||||||||||| Sbjct: 445 gggcgagccggaggaggacgaggacgagg 473
>gb|AC121147.8| Mus musculus chromosome 3, clone RP24-369O15, complete sequence Length = 178352 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 acggggaggacgacctcatc 365 |||||||||||||||||||| Sbjct: 140699 acggggaggacgacctcatc 140680
>ref|NM_197753.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0089A17.6), mRNA Length = 1710 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 cgccggaggtggacgaggacgagg 216 ||||||||||||||||| |||||| Sbjct: 1574 cgccggaggtggacgagaacgagg 1597
>ref|XM_526394.1| PREDICTED: Pan troglodytes PXR2b protein (LOC471010), mRNA Length = 2346 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gccgcctccgcggtcccgca 91 |||||||||||||||||||| Sbjct: 445 gccgcctccgcggtcccgca 464
>ref|XM_478399.1| Oryza sativa (japonica cultivar-group), mRNA Length = 411 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 ggaggtggacgaggacgagg 216 |||||||||||||||||||| Sbjct: 285 ggaggtggacgaggacgagg 304
>ref|XM_477548.1| Oryza sativa (japonica cultivar-group), mRNA Length = 555 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 acgcggctgtccgccagcac 343 |||||||||||||||||||| Sbjct: 64 acgcggctgtccgccagcac 83
>gb|AC116776.12| Mus musculus chromosome 3, clone RP24-472H5, complete sequence Length = 170076 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 acggggaggacgacctcatc 365 |||||||||||||||||||| Sbjct: 118629 acggggaggacgacctcatc 118648
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gggcggccgtcacgggcgcg 194 |||||||||||||||||||| Sbjct: 3294141 gggcggccgtcacgggcgcg 3294122
>ref|XM_591639.2| PREDICTED: Bos taurus similar to phosphofurin acidic cluster sorting protein 1 (LOC513882), partial mRNA Length = 1599 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggaggtggacgaggacgagg 216 |||||||||||||||||||| Sbjct: 216 ggaggtggacgaggacgagg 197
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gggcggccgtcacgggcgcg 194 |||||||||||||||||||| Sbjct: 691485 gggcggccgtcacgggcgcg 691504
>gb|AC006392.1| Homo sapiens BAC clone RP11-520M18 from 7, complete sequence Length = 117381 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 cccatcaccgcctcccccagctcc 153 ||||||||| |||||||||||||| Sbjct: 13632 cccatcaccacctcccccagctcc 13609
>ref|XM_541429.2| PREDICTED: Canis familiaris similar to osteoclast-associated receptor isoform 1 (LOC484313), mRNA Length = 885 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cagcacgtacggggaggacg 357 |||||||||||||||||||| Sbjct: 582 cagcacgtacggggaggacg 563
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 agcacgcggctgtccgccagcacg 344 |||||||||||||||| ||||||| Sbjct: 171126 agcacgcggctgtccgtcagcacg 171103
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tggacgaggacgaggccatg 221 |||||||||||||||||||| Sbjct: 2319993 tggacgaggacgaggccatg 2319974
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gggcggccgtcacgggcgcg 194 |||||||||||||||||||| Sbjct: 500122 gggcggccgtcacgggcgcg 500141
>dbj|AK093977.1| Homo sapiens cDNA FLJ36658 fis, clone UTERU2002011, highly similar to DNA BINDING PROTEIN RFX2 Length = 3392 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 tctcctcccgcttcactcctctgg 39 ||||||||||||||| |||||||| Sbjct: 815 tctcctcccgcttcagtcctctgg 838
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence Length = 132927 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 cgccggaggtggacgaggacgagg 216 ||||||||||||||||| |||||| Sbjct: 79602 cgccggaggtggacgagaacgagg 79579
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 cgccggaggtggacgaggacgagg 216 ||||||||||||||||| |||||| Sbjct: 21647698 cgccggaggtggacgagaacgagg 21647675
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cggcgcggccggctctgcgc 172 |||||||||||||||||||| Sbjct: 13864183 cggcgcggccggctctgcgc 13864164
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggaggtggacgaggacgagg 216 |||||||||||||||||||| Sbjct: 19699828 ggaggtggacgaggacgagg 19699809 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 acgcggctgtccgccagcac 343 |||||||||||||||||||| Sbjct: 11386198 acgcggctgtccgccagcac 11386217
>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene cluster, partial sequence Length = 127559 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gctccggcgcggccggctctgcgc 172 ||||||||||||| |||||||||| Sbjct: 28058 gctccggcgcggcgggctctgcgc 28081
>gb|AC011444.5|AC011444 Homo sapiens chromosome 19 clone CTC-232P5, complete sequence Length = 133925 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 tctcctcccgcttcactcctctgg 39 ||||||||||||||| |||||||| Sbjct: 90814 tctcctcccgcttcagtcctctgg 90837
>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0048D08 Length = 145772 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ggaggtggacgaggacgagg 216 |||||||||||||||||||| Sbjct: 31834 ggaggtggacgaggacgagg 31815
>dbj|AP004346.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0656C04 Length = 143411 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 acgcggctgtccgccagcac 343 |||||||||||||||||||| Sbjct: 86709 acgcggctgtccgccagcac 86728
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cggcgcggccggctctgcgc 172 |||||||||||||||||||| Sbjct: 113667 cggcgcggccggctctgcgc 113648
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0435D08 Length = 148912 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cggcgcggccggctctgcgc 172 |||||||||||||||||||| Sbjct: 17860 cggcgcggccggctctgcgc 17841
>dbj|AK106294.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B09, full insert sequence Length = 1804 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 cgccggaggtggacgaggacgagg 216 ||||||||||||||||| |||||| Sbjct: 1415 cgccggaggtggacgagaacgagg 1438
>gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167152 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gccgcctccgcggtcccgca 91 |||||||||||||||||||| Sbjct: 86596 gccgcctccgcggtcccgca 86615
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gggcggccgtcacgggcgcg 194 |||||||||||||||||||| Sbjct: 479309 gggcggccgtcacgggcgcg 479328
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 cgccggaggtggacgaggacgagg 216 ||||||||||||||||| |||||| Sbjct: 21659361 cgccggaggtggacgagaacgagg 21659338
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cagcggacgcccctgcgctg 120 |||||||||||||||||||| Sbjct: 2029478 cagcggacgcccctgcgctg 2029459
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cagcggacgcccctgcgctg 120 |||||||||||||||||||| Sbjct: 2058995 cagcggacgcccctgcgctg 2059014
>emb|AL663048.12| Mouse DNA sequence from clone RP23-166N12 on chromosome X, complete sequence Length = 234817 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 ggaggtggacgaggacgagg 216 |||||||||||||||||||| Sbjct: 86153 ggaggtggacgaggacgagg 86172 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 ggaggtggacgaggacgagg 216 |||||||||||||||||||| Sbjct: 86018 ggaggtggacgaggacgagg 86037 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,963,232 Number of Sequences: 3902068 Number of extensions: 2963232 Number of successful extensions: 58955 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57666 Number of HSP's gapped (non-prelim): 1288 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
