ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet21g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_818153.1| Trypanosoma brucei TREU927 EP2 procyclin (Tb10.... 42 1.2
2emb|CT009769.4| Mouse DNA sequence from clone RP23-44C21 on chro... 40 4.9
3emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromo... 40 4.9
4emb|AL031732.8|HS410I8 Human DNA sequence from clone RP3-410I8 o... 40 4.9
5emb|AL008716.1|HS206C7 Human DNA sequence from clone CTA-206C7 o... 40 4.9
6emb|AL670001.1|NCB14H13 Neurospora crassa DNA linkage group II B... 40 4.9
7gb|AC159887.2| Mus musculus BAC clone RP24-249O13 from chromosom... 40 4.9
8gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complet... 40 4.9
9emb|AL596446.11| Mouse DNA sequence from clone RP23-386E10 on ch... 40 4.9

>ref|XM_818153.1| Trypanosoma brucei TREU927 EP2 procyclin (Tb10.6k15.0030) partial
           mRNA
          Length = 390

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 11  ctggaccttggttcccttctc 31
           |||||||||||||||||||||
Sbjct: 153 ctggaccttggttcccttctc 133



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>emb|CT009769.4| Mouse DNA sequence from clone RP23-44C21 on chromosome 9, complete
              sequence
          Length = 197074

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 232    ttggtccaaggcagcctttgcctc 255
              ||||||||||||||| ||||||||
Sbjct: 139246 ttggtccaaggcagcttttgcctc 139269



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>emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromosome 9 Contains the
             TYRP1 gene for tyrosinase-related protein 1, the 3' end of
             a novel gene and the 5' end of a novel gene (FLJ38505
             FLJ90271), complete sequence
          Length = 162151

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   agaaggcaagtcttgaattt 286
             ||||||||||||||||||||
Sbjct: 16646 agaaggcaagtcttgaattt 16665



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>emb|AL031732.8|HS410I8 Human DNA sequence from clone RP3-410I8 on chromosome 1p35.1-36.23
             Contains a tubulin-specific chaperone a (TBCA) pseudogene,
             complete sequence
          Length = 69017

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     cactggaccttggttcccttctct 32
             |||||||||||| |||||||||||
Sbjct: 15482 cactggaccttgattcccttctct 15505



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>emb|AL008716.1|HS206C7 Human DNA sequence from clone CTA-206C7 on chromosome 22q12.3-13.2,
             complete sequence
          Length = 47877

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    agagcctggggttttgggag 110
             ||||||||||||||||||||
Sbjct: 17814 agagcctggggttttgggag 17795



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>emb|AL670001.1|NCB14H13 Neurospora crassa DNA linkage group II BAC clone B14H13
          Length = 67890

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    accttggttcccttctcttttctt 38
             ||||||||||| ||||||||||||
Sbjct: 25505 accttggttcctttctcttttctt 25528



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>gb|AC159887.2| Mus musculus BAC clone RP24-249O13 from chromosome 9, complete sequence
          Length = 160241

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 232    ttggtccaaggcagcctttgcctc 255
              ||||||||||||||| ||||||||
Sbjct: 114722 ttggtccaaggcagcttttgcctc 114699



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>gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complete sequence
          Length = 179607

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     tcccttctcttttcttggct 42
              ||||||||||||||||||||
Sbjct: 105878 tcccttctcttttcttggct 105859



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>emb|AL596446.11| Mouse DNA sequence from clone RP23-386E10 on chromosome 11, complete
             sequence
          Length = 191735

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   aggaatcaagagaagcaacc 331
             ||||||||||||||||||||
Sbjct: 90191 aggaatcaagagaagcaacc 90172


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,179,306
Number of Sequences: 3902068
Number of extensions: 3179306
Number of successful extensions: 68094
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68079
Number of HSP's gapped (non-prelim): 15
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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