>Y114_CHLMU (Q9PLI5) Hypothetical protein TC0114|
          Length = 122

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 21/38 (55%), Positives = 22/38 (57%)
 Frame = -3

Query: 333 GEQSNTW*ILLHNDRKSRHRRIKKQRRYERLAATSQLS 220
           GEQ N W +L   D  SRHR  K  RRYE L A S LS
Sbjct: 66  GEQPNPWDLLQPQDAMSRHRGAKPPRRYELLVAISLLS 103

>HXC11_HUMAN (O43248) Homeobox protein Hox-C11|
          Length = 304

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 329 NNPTLGEFCFTMIGRADIE-GSKSNVAMNAWLPQASYPCGNFSDTSSFKLRRSKGSIGHA 153
           N+  LG FC         + G + + A N +LP  +Y    FS  SSF  +     I + 
Sbjct: 3   NSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQISYP 62

Query: 152 FTVRI 138
           ++ ++
Sbjct: 63  YSAQV 67

>CAF1A_HUMAN (Q13111) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 938

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
 Frame = +3

Query: 96  NKRVKARLILISSTNTNRESVAYRSFRSSEFEARGVRKVTTG------ITGLWQPSVHSD 257
           ++++ A+L+ +   N N   V  R F+  E   RG+    TG       T L  P+   D
Sbjct: 714 DEQILAQLLPLLHGNVNGSKVIIREFQ--EHCRRGLLSNHTGSPRTPSTTYLHTPTPSED 771

Query: 258 VAF*S-------FDVGSSYHCEAEFTKCWIVHPPI 341
            A  S           S Y    +F  CW VHP +
Sbjct: 772 AAIPSKSRLKRLISENSVYEKRPDFRMCWYVHPQV 806

>CEMA_ANTFO (Q85AP4) Chloroplast envelope membrane protein|
          Length = 508

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 314 GEFCFTMIGRADIEGSKSNVAMNAWLPQASYPCGNFSDT 198
           G  CFT +G   I G K    +N+W+ ++ Y   + SDT
Sbjct: 392 GMICFTTLGALFILGKKRLSVLNSWIQESFY---SLSDT 427

>CEMA_SPIOL (Q9M3L4) Chloroplast envelope membrane protein|
          Length = 229

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 305 CFTMIGRADIEGSKSNVAMNAWLPQASYPCGNFSDT 198
           CF ++G   I G+K  + +N+W+ +  Y   N SDT
Sbjct: 116 CFLILGGYSILGNKELILLNSWVQEFLY---NLSDT 148

>FL3H_VITVI (P41090) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9)|
           (Flavonone-3-hydroxylase) (F3H) (FHT)
          Length = 364

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 121 F*FPVRIRTVKAWPIDPLDLRSLKLEVSEKL 213
           F +P+R R    WP  P   RS+  E SEKL
Sbjct: 135 FSYPLRTRDYSRWPDKPEGWRSVTQEYSEKL 165

>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
 Frame = +3

Query: 96  NKRVKARLILISSTNTNRESVAYRSFRSSEFEARGVRKVTTGITGLWQPSVHSDVAF*S- 272
           ++ + A+L+ +   N N   V    F+  E   RG+  + +    L  P++   VA  S 
Sbjct: 711 DQHILAQLLPLLHGNVNGSKVIIHEFQ--EQCRRGLLTLPSPTPHLQMPNLEDAVAVPSK 768

Query: 273 ------FDVGSSYHCEAEFTKCWIVHPPI 341
                     S+Y     F  CW VHP +
Sbjct: 769 ARLKRLISENSAYEKRPNFRMCWYVHPEV 797

>ATS9_HUMAN (Q9P2N4) ADAMTS-9 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 9) (ADAM-TS
           9) (ADAM-TS9)
          Length = 1935

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -1

Query: 236 PQASYPCGNFSDTSSFKLRRSKGSIGHAFTVR-IRTGNQNQTSFY 105
           PQA Y    F     F L  + G I   FTV  + T   NQT FY
Sbjct: 96  PQAHYRLSAFGQQFLFNLTANAGFIAPLFTVTLLGTPGVNQTKFY 140

>YPQR_ACICA (P07783) Hypothetical protein in PQQ-III 3'region (ORF R)|
           (Fragment)
          Length = 315

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -1

Query: 248 NAWLPQASYPCGNFSDTSSFKLRRSKGSIGHAFTVR-IRTGNQNQTSFYPFVPHEISVLV 72
           +A  PQA     N +D     +R SKG +G  F V  +R+  Q                +
Sbjct: 230 HALCPQAR----NLTDPQLKAIRESKGMVGVNFDVAFLRSDGQRNAD----------TSI 275

Query: 71  ELILGHLRYLLTDVPP 24
           ++IL HL YL+  V P
Sbjct: 276 DVILEHLEYLMDRVAP 291

>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (mNIFK)
          Length = 317

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 218 CGNFSDTSSFKLRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLV 72
           C  F D S F+L RSK           RTGN    +F  F   +++ +V
Sbjct: 67  CAQFGDISRFRLSRSK-----------RTGNSKGYAFVEFESEDVAKIV 104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,515,624
Number of Sequences: 219361
Number of extensions: 1228566
Number of successful extensions: 3004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3001
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)