>PAO_ARATH (Q9FYC2) Pheophorbide a oxygenase, chloroplast precursor (EC|
           1.-.-.-) (Pheide a oxygenase) (AtPaO) (Accelerated cell
           death 1) (Lethal leaf-spot 1 homolog) (Lls1)
          Length = 537

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 253 DGSEAAGRYDWREEWYPLYLSKEVPDDAALPLTVFDRQLVLYRDA-DGVLRCHEDRCPHR 429
           D  E    + WR+ WYP+ L +++  +   P  +  R LVL+ D  D      +D CPHR
Sbjct: 74  DKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHR 133

Query: 430 L 432
           L
Sbjct: 134 L 134

>PHT3_PSEPU (Q05183) Phthalate 4,5-dioxygenase oxygenase subunit (EC 1.14.12.7)|
          Length = 439

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 229 EDGVLLPKDGSEAAGRYDWREEWYPLYLSKEV--PDDAALPLTVFDRQLVLYRDADGVLR 402
           E+ +LL +   +A      R  W P+ L +EV  PD   +   +F   LV++RD DG + 
Sbjct: 5   EENLLLCRVEGDAPMGQMMRRHWTPVCLLEEVSEPDGTPVRARLFGEDLVVFRDTDGRVG 64

Query: 403 CHEDRCPHR 429
             ++ CPHR
Sbjct: 65  VMDEYCPHR 73

>NASE_BACSU (P42436) Assimilatory nitrite reductase [NAD(P)H] small subunit (EC|
           1.7.1.4)
          Length = 106

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 12/38 (31%), Positives = 26/38 (68%)
 Frame = +1

Query: 316 KEVPDDAALPLTVFDRQLVLYRDADGVLRCHEDRCPHR 429
           +E+P+     + + D++L +++ +DG +R  E+RCPH+
Sbjct: 15  EELPEQLGKTVYIEDKELAVFKLSDGSIRAIENRCPHK 52

>CBAA_COMTE (Q44256) 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit (EC|
           1.14.-.-)
          Length = 432

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 286 REEWYPLYLSKEVPDDAA-LPLTVFDRQLVLYRDADGVLRCHEDRCPHR 429
           RE W P   S E+    + + L +   +LV +R+  G +   + RCPHR
Sbjct: 24  REYWIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHR 72

>TRBE1_RHISN (P55398) Probable conjugal transfer protein trbE part 1|
          Length = 149

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = +1

Query: 169 ERSRAVGWCRAAAVEEAGAQEDGVLLPKDGSEAAGRY 279
           +R RA G   A  V  AG  ++GVLL KDGS  AG Y
Sbjct: 5   KRFRATGPSFADLVPYAGLVDNGVLLLKDGSLMAGWY 41

>VANA_PSEUH (O05616) Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)|
           (4-hydroxy-3-methoxybenzoate demethylase)
          Length = 354

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 286 REEWYPLYLSKEVPDDAALPLTVFDRQLVLYRDADGVLRCHEDRCPHR 429
           +  WY      E+ D   L   + + ++V YR  +G +   ED CPHR
Sbjct: 4   KNAWYVACTPDEIADKP-LGRQICNEKIVFYRGPEGRVAAVEDFCPHR 50

>POBA_PSEPS (Q52185) Phenoxybenzoate dioxygenase alpha subunit (EC 1.14.12.-)|
           (4-carboxydiphenyl ether;phenoxybenzoate dioxygenase)
          Length = 409

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 286 REEWYPLYLSKEVPDDAALPLTVFDRQLVLYRDADGVLRCHEDRCPHR 429
           R  W P+ LS +V D   + + +    LVL+RD  G       RC HR
Sbjct: 42  RRYWQPVALSADVTDRPQM-VRILGEDLVLFRDKAGRPGLLYPRCMHR 88

>MAUM_PARDE (Q51659) Methylamine utilization ferredoxin-type protein mauM|
           precursor
          Length = 224

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 301 PLYLSKEVPDDAALPLTVFDRQLVLYRDAD---GVLRCHE 411
           P Y+ K+VP   A P    DR +   RDAD    VL  HE
Sbjct: 101 PCYMCKDVPCARACPTGALDRDIPSIRDADMGVAVLVGHE 140

>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)|
          Length = 1755

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 190 WCRAAAVEEAGAQEDGVLLPKDGSEAAGRYDWREE 294
           W  +  V   GA ED  +L  DG  +  R + REE
Sbjct: 14  WMNSERVRMCGASEDRKILVNDGDASKARLELREE 48

>GLGA_RHITR (Q9EUT5) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase)
          Length = 480

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 190 WCRAAAVEEAGAQEDGVLLPKDGSEAAGRYDWREEWYPLYL 312
           W R AA+  AGA+    LLP    +    +DW+    P+Y+
Sbjct: 108 WRRFAALSLAGAEIAAGLLPGWRPDLVHAHDWQSALVPVYM 148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,797,524
Number of Sequences: 219361
Number of extensions: 322130
Number of successful extensions: 1208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)