>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  144 bits (362), Expect = 1e-34
 Identities = 70/71 (98%), Positives = 71/71 (100%)
 Frame = +3

Query: 243 MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGQQTDADRWK 422
           MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQG+QTDADRWK
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWK 60

Query: 423 GLAYDISDDQQ 455
           GLAYDISDDQQ
Sbjct: 61  GLAYDISDDQQ 71

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 50/77 (64%), Positives = 56/77 (72%), Gaps = 6/77 (7%)
 Frame = +3

Query: 243 MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGQQT 404
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   S + R     KELD+G+QT
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKS---SNINRFKVMAKELDEGKQT 57

Query: 405 DADRWKGLAYDISDDQQ 455
           D DRWKGLAYDISDDQQ
Sbjct: 58  DQDRWKGLAYDISDDQQ 74

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 48/80 (60%), Positives = 56/80 (70%), Gaps = 9/80 (11%)
 Frame = +3

Query: 243 MASAFSSTVGAPASTPT--IFLGKKVKN-------YYHGGNKMKSRVVRVMAAKKELDQG 395
           MA+AFSSTVGAPASTPT   FLGKK+          YHG +   +   + MAAK E+D+ 
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAK-EVDET 59

Query: 396 QQTDADRWKGLAYDISDDQQ 455
           +QTD DRWKGLAYDISDDQQ
Sbjct: 60  KQTDEDRWKGLAYDISDDQQ 79

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 46/77 (59%), Positives = 55/77 (71%), Gaps = 6/77 (7%)
 Frame = +3

Query: 243 MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGQQT 404
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA + +D+ + T
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAA-ENIDEKRNT 58

Query: 405 DADRWKGLAYDISDDQQ 455
             D+WKGLAYDISDDQQ
Sbjct: 59  --DKWKGLAYDISDDQQ 73

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
 Frame = +3

Query: 270 GAPASTPT-IFLGKKVKNYYHG---GNKMKSRVVRVMAAKKELDQGQQTDADRWKGLAYD 437
           GA AS PT  F G  +K         +K+ +   +++AA+KE+++ QQT+ DRWKGLAYD
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYD 81

Query: 438 ISDDQQ 455
           ISDDQQ
Sbjct: 82  ISDDQQ 87

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
 Frame = +3

Query: 231 SINTMASAFSSTVGAPASTPTIFLG---KKVKNYYHGGNKMKSRVVRVMAAKKELDQGQQ 401
           ++N      + + G  +   + F G   KKV +     +K+ S   +++AA KE+++ QQ
Sbjct: 10  AVNRTLLNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQ 69

Query: 402 TDADRWKGLAYDISDDQQ 455
           T+ DRW+GLAYD+SDDQQ
Sbjct: 70  TEGDRWRGLAYDVSDDQQ 87

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
 Frame = +3

Query: 231 SINTMASAFSSTVGAPASTPTIFLGKKVKNYYHGG---NKMKSRVVRVMAAKKELDQGQQ 401
           ++N    + +++V   +   T F GK +K  Y  G    K+ ++ +R++A + ++D  +Q
Sbjct: 10  AVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQ 69

Query: 402 TDADRWKGLAYDISDDQQ 455
           TD+DRWKGL  D SDDQQ
Sbjct: 70  TDSDRWKGLVQDFSDDQQ 87

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = +3

Query: 258 SSTVGAPASTPTIFLGKKVKNY--YHGGNKMKSRVVRVMAAKKELDQGQQTDADRWKGLA 431
           S  V APAST   FLGKKV     +   NK  +   +V+A K++    +QTD DRW+GLA
Sbjct: 23  SGAVSAPAST---FLGKKVVTVSRFAQSNKKSNGSFKVLAVKED----KQTDGDRWRGLA 75

Query: 432 YDISDDQQ 455
           YD SDDQQ
Sbjct: 76  YDTSDDQQ 83

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
 Frame = +3

Query: 186 LETTVIKLSAARRERSINTMASAFSSTVGAPASTPTIFLGKKVKNYYHGG---NKMKSRV 356
           + T+V  + AA      N    + +++V   +   T F GK +K  Y  G    K+ +R 
Sbjct: 1   MATSVSTIGAA------NKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRS 54

Query: 357 VRVMAAKKELDQGQQTDADRWKGLAYDISDDQQ 455
           +R+ A +K+ D  +QT +DRWKGL  D SDDQQ
Sbjct: 55  LRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQ 87

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
 Frame = +3

Query: 258 SSTVGAPASTPTIFLGKKVK--NYYHGGNKMKSRVVRVMAAKKELDQGQQTDADRWKGLA 431
           SS+   P+ST   FLG  +K  N     +K+ S  +R++A+   +D+ +QTD DRWKGLA
Sbjct: 22  SSSASVPSST---FLGSSLKKVNSRFTNSKVSSGSLRIVAS---VDEDKQTDKDRWKGLA 75

Query: 432 YDISDDQQ 455
           +D SDDQQ
Sbjct: 76  FDTSDDQQ 83

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
 Frame = +3

Query: 243 MASAFSSTVGAPASTP---------------TIFLGKKVKNYYHGGNKMKSRVVRVMAAK 377
           MA+A+S TVGA    P               T F G  +K       K  S   +++A  
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVA-- 57

Query: 378 KELDQGQQTDADRWKGLAYDISDDQQ 455
           +E+ + QQTD D+WKGLAYDISDDQQ
Sbjct: 58  QEISEDQQTDKDKWKGLAYDISDDQQ 83

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
 Frame = +3

Query: 243 MASAFSSTVGAPASTP---------------TIFLGKKVKNYYHGGNKMKSRVVRVMAAK 377
           MA+A+S TVGA    P               T F G  +K       K  S   +++A  
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVA-- 57

Query: 378 KELDQGQQTDADRWKGLAYDISDDQQ 455
           +E+ + QQTD D+WKGLAYDISDDQQ
Sbjct: 58  QEISEDQQTDKDKWKGLAYDISDDQQ 83

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 17/86 (19%)
 Frame = +3

Query: 249 SAFSSTVGAPASTP--------------TIFLGKKVKNYYHGG---NKMKSRVVRVMAAK 377
           +A  ST+GA +  P              T F GK +K  Y  G    K+ +R +RV+A  
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVA-- 59

Query: 378 KELDQGQQTDADRWKGLAYDISDDQQ 455
           +E+D+   T  DRWKGL  + SDDQQ
Sbjct: 60  QEVDE---TKEDRWKGLYDNTSDDQQ 82

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = +3

Query: 297 FLGKKVK-NYYHGGNKMKSRVVRVMAAKKELDQGQQTDADRWKGLAYDISDDQQ 455
           FLG ++K +     +KM +   +++A   E D+ +QT+ D+W+GLA+D SDDQQ
Sbjct: 30  FLGSRLKVSSRFTTSKMVTGNFKIVA---EQDEEKQTEKDKWRGLAFDTSDDQQ 80

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 273 APASTPTI-FLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGQQTDADRWKGLAYDISDD 449
           A AS PT  FLG  +K + +      SR   +     E    ++ + D+W  LA D SDD
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAAE---NEEKNTDKWAHLAKDFSDD 79

Query: 450 Q 452
           Q
Sbjct: 80  Q 80

>EST2_RABIT (P14943) Liver carboxylesterase 2 (EC 3.1.1.1)|
          Length = 532

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 2   IASVPANHCTPLFYPYQLHPSLTIDLSPP 88
           +A +  +H    FY +Q  PS T DL PP
Sbjct: 396 VAHLQRSHAPTYFYEFQHRPSFTKDLRPP 424

>Y5626_BACAN (Q81JS3) Probable tautomerase BA5626/GBAA5626/BAS5226 (EC 5.3.2.-)|
          Length = 60

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 201 IKLSAARRERSINTMA----SAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKS 350
           +K+   R E     +A    +A S T GAP     +F+ +  KN+Y  G K  S
Sbjct: 5   VKMLEGRTEEQKKALAEKVTAAVSETTGAPEENIVVFIEEMSKNHYAVGGKRLS 58

>Y5378_BACCR (Q814P5) Probable tautomerase BC_5378 (EC 5.3.2.-)|
          Length = 60

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 201 IKLSAARRERSINTMA----SAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKS 350
           +K+   R E     +A    +A S T GAP     +F+ +  KN+Y  G K  S
Sbjct: 5   VKMLEGRTEEQKKALAEKVTAAVSETTGAPEENIVVFIEEMSKNHYAVGGKRLS 58

>RNC_MYCS5 (Q4A589) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 231

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 306 KKVKNYYHGGNKMKSRVVRVMAAKKELDQGQQTDADRWKGLAYDISDDQQ 455
           KK +N     + + S VV  + A   LDQG Q+  D  K   Y+I++  Q
Sbjct: 110 KKARNEVLSSSNVLSDVVEALIAAIYLDQGMQSAKDFIKSHFYEIANKAQ 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,633,764
Number of Sequences: 219361
Number of extensions: 1046466
Number of successful extensions: 3304
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3301
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)