Clone Information

BLAST Search Result

Clone Name	baet21c05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TEGU_EBV (P03186) Large tegument protein	30	1.2
2	COKA1_HUMAN (Q9P218) Collagen alpha-1(XX) chain precursor	30	1.2
3	CHEB2_PSE14 (Q48GG6) Chemotaxis response regulator protein-gluta...	30	1.5
4	XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1...	30	1.5
5	SYG_MYCTU (P67032) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine...	30	2.0
6	SYG_MYCBO (P67033) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine...	30	2.0
7	RFCL_HALMA (Q5V1F7) Replication factor C large subunit (RFC larg...	29	2.6
8	SYG_MYCPA (Q73Y21) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine...	29	2.6
9	IF2_CORGL (Q8NP40) Translation initiation factor IF-2	29	2.6
10	EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXP...	29	3.4
11	ABL1_HUMAN (P00519) Proto-oncogene tyrosine-protein kinase ABL1 ...	29	3.4
12	RS12_PROMM (Q7V503) 30S ribosomal protein S12	29	3.4
13	V_SENDH (P69280) Protein V	28	4.4
14	V_SENDF (P69284) Protein V	28	4.4
15	PHOSP_SENDH (P04859) Phosphoprotein (Protein P)	28	4.4
16	PHOSP_SENDF (P14252) Phosphoprotein (Protein P)	28	4.4
17	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	28	4.4
18	W_SENDH (P69281) Protein W	28	4.4
19	W_SENDF (P69285) Protein W	28	4.4
20	CD2_HORSE (P37998) T-cell surface antigen CD2 precursor	28	5.7
21	ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11	28	5.7
22	RR12_ADICA (Q85FG4) Chloroplast 30S ribosomal protein S12	28	5.7
23	DNAJ_BACST (Q45552) Chaperone protein dnaJ	28	5.7
24	PHOSP_SEND6 (P14251) Phosphoprotein (Protein P)	28	7.5
25	RR12_PINTH (P52762) Chloroplast 30S ribosomal protein S12	28	7.5
26	RR12_PINKO (Q85X49) Chloroplast 30S ribosomal protein S12	28	7.5
27	CRLS1_MOUSE (Q80ZM8) Cardiolipin synthetase (EC 2.7.8.-) (Cardio...	28	7.5
28	TGM3L_HUMAN (O95932) Protein-glutamine gamma-glutamyltransferase...	28	7.5
29	CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)	28	7.5
30	LTBP2_MOUSE (O08999) Latent transforming growth factor beta-bind...	28	7.5
31	ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)	27	9.8
32	TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)	27	9.8
33	MYCL1_HUMAN (P12524) L-myc-1 proto-oncogene protein	27	9.8
34	RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2...	27	9.8
35	NCPR_CAVPO (P37039) NADPH--cytochrome P450 reductase (EC 1.6.2.4...	27	9.8
36	HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated...	27	9.8
37	SP5_HUMAN (Q6BEB4) Transcription factor Sp5	27	9.8
38	AL_DROME (Q06453) Homeobox protein aristaless	27	9.8
39	SYG_CORGL (Q8NNC6) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine...	27	9.8
40	BETA_RHIME (P54223) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)	27	9.8
41	BETA_AGRT5 (Q8UH55) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)	27	9.8
42	XERC1_RALSO (Q8Y3C8) Tyrosine recombinase xerC 1	27	9.8
43	ELN_MOUSE (P54320) Elastin precursor (Tropoelastin)	27	9.8

>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 27/93 (29%), Positives = 39/93 (41%)
 Frame = +1

Query: 49  YEQPEISYHILPVQPEYVTNHCTSFVNYSQAAQSWPQARPPAGISSSRAARPGT*PATGH 228
           +E+  I Y++ P+     T+       YS A  + P + P +   +S A      PA+  
Sbjct: 296 FERRIIPYNLRPLPSRSFTSDSFPAARYSPAKTNSPPSSPASAAPASAA------PASA- 348

Query: 229 ALQSEAPAMRAGWRALSTRPRHAVAVPASGRPV 327
           A  S APA  A   A       A A PAS  P+
Sbjct: 349 APASAAPASAAPASAAPASAAPASAAPASSPPL 381

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>COKA1_HUMAN (Q9P218) Collagen alpha-1(XX) chain precursor|
          Length = 1329

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
 Frame = +3

Query: 75   YTPCTAGVCN*SLYKFCKLQSSSTELAPSPPAGR--HQFLTRGAAGHL-----------T 215
            YTP T      S          S +++ +PP GR  H +LT   A  L            
Sbjct: 741  YTPSTVSRSPPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGAR 800

Query: 216  GHWTRPSIRGACHARGLAGAVYSATARCRRSRVRKTSC 329
             H T P ++ A   R L  A+Y+A      S   +T+C
Sbjct: 801  SHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTAC 838

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>CHEB2_PSE14 (Q48GG6) Chemotaxis response regulator protein-glutamate|
           methylesterase 2 (EC 3.1.1.61)
          Length = 387

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 139 AAQSWPQARPPAGISSSRAARPGT*PATGHALQSEAPAMRAGWRALSTRPRHAVAVP-AS 315
           AA +   A P A  SSSRA  P T PA     ++ APA      A +    HA A P  S
Sbjct: 141 AASAASAAAPAAPTSSSRAPAPTTAPARAVPTRTAAPA-----TAPAAHAHHAPAHPTTS 195

Query: 316 GRP 324
           G P
Sbjct: 196 GTP 198

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>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)|
            (Strand-exchange protein 1 homolog) (Protein Dhm2)
          Length = 1719

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = +1

Query: 1    QATTERMYNLQRSVTNYEQPEISYHILPVQPEYVTNHCTSFVNYSQAAQSWPQARPPAGI 180
            Q T +R+ N +    N+E  E        Q    T   T+    S+A +  PQ  PPA  
Sbjct: 1621 QVTKKRVANRK----NFENKE-------AQSSQATPLQTNKPGSSEATKMTPQESPPASS 1669

Query: 181  SSSRAARP 204
            SSS+AA+P
Sbjct: 1670 SSSQAAQP 1677

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>SYG_MYCTU (P67032) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 463

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 322 VFRTRERRQRAVAE*TAPASPRAWQAPRIEGRVQW 218
           +FRTRE  Q  +     PA+ + W    I+ R+QW
Sbjct: 206 IFRTREFEQMEMEFFVEPATAKEWHQYWIDNRLQW 240

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>SYG_MYCBO (P67033) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 463

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 322 VFRTRERRQRAVAE*TAPASPRAWQAPRIEGRVQW 218
           +FRTRE  Q  +     PA+ + W    I+ R+QW
Sbjct: 206 IFRTREFEQMEMEFFVEPATAKEWHQYWIDNRLQW 240

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>RFCL_HALMA (Q5V1F7) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit)
          Length = 508

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -2

Query: 323 GLPDAGTATACRGRVDSARQPARMAGASD*RACPVAGQVPGRAAREELMPAGG 165
           G P  G  +A     +    P     ASD R   V  +V G AA+   + AGG
Sbjct: 43  GSPGIGKTSAAHALANDMEWPTIELNASDSRTKDVINRVAGEAAKSGTLTAGG 95

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>SYG_MYCPA (Q73Y21) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 463

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 322 VFRTRERRQRAVAE*TAPASPRAWQAPRIEGRVQWPVKCPAAPR 191
           +FRTRE  Q  +     P++ + W    I+ R+QW V+    P+
Sbjct: 206 IFRTREFEQMEMEFFVEPSTAKEWHQYWIDTRLQWYVELGIDPQ 249

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>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 155 PKPARRPASVPHARRGRALDRPLDTPFNPRRLPCARAGGRCLLGHGTL-SPFPRPEDQ 325
           P+P  +PA  P AR  R  + P  T    R  P  R GG    G G      PRP+ Q
Sbjct: 187 PRPMGKPAPKPGARAPRVANNPFSTGGGER--PAPRPGGGPRPGGGPRPGGGPRPQGQ 242

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>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)|
           (Ath-ExpBeta-1.5)
          Length = 271

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 141 STELAPSPPAGRHQFLTRGAAGHLTGHWTRPSIRGACHARGLAGAVYSATA 293
           +T+ +PS P+ + +      +G   GH   P   G    RGL   +Y  TA
Sbjct: 113 ATDQSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTA 163

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>ABL1_HUMAN (P00519) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)|
            (p150) (c-ABL) (Abelson murine leukemia viral oncogene
            homolog 1)
          Length = 1130

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 154  PQARPPAGISSSRAARPGT*PATGHALQSEAPAMRAGWRALSTR 285
            PQ+  P+G   S A  P T P+   AL  + P+  A    +STR
Sbjct: 966  PQSAKPSGTPISPAPVPSTLPSASSALAGDQPSSTAFIPLISTR 1009

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>RS12_PROMM (Q7V503) 30S ribosomal protein S12|
          Length = 125

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 180 QFLTRGAAGHLTGHWTRPSIRGACHARGLAGAVYSATARCRRSRVRKTS 326
           Q L R    HLT     P++R     RG+   VY++T +   S +RK +
Sbjct: 5   QQLIRTERQHLTRKTKSPALRACPERRGVCTRVYTSTPKKPNSALRKVA 53

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>V_SENDH (P69280) Protein V|
          Length = 384

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 166 PPAGISSSRAARPGT*PATG--HALQSEAPAMRAGWRALSTRPRHAVAVPASGRPV 327
           PP    +S  + PG  P+T   H    + PA+R   R      R     PA+GRP+
Sbjct: 250 PPLNRYNSTGSPPGKPPSTQDEHINSGDTPAVRVKDRKPPIGTRSVSDCPANGRPI 305

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>V_SENDF (P69284) Protein V|
          Length = 384

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 166 PPAGISSSRAARPGT*PATG--HALQSEAPAMRAGWRALSTRPRHAVAVPASGRPV 327
           PP    +S  + PG  P+T   H    + PA+R   R      R     PA+GRP+
Sbjct: 250 PPLNRYNSTGSPPGKPPSTQDEHINSGDTPAVRVKDRKPPIGTRSVSDCPANGRPI 305

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>PHOSP_SENDH (P04859) Phosphoprotein (Protein P)|
          Length = 568

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 166 PPAGISSSRAARPGT*PATG--HALQSEAPAMRAGWRALSTRPRHAVAVPASGRPV 327
           PP    +S  + PG  P+T   H    + PA+R   R      R     PA+GRP+
Sbjct: 250 PPLNRYNSTGSPPGKPPSTQDEHINSGDTPAVRVKDRKPPIGTRSVSDCPANGRPI 305

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>PHOSP_SENDF (P14252) Phosphoprotein (Protein P)|
          Length = 568

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 166 PPAGISSSRAARPGT*PATG--HALQSEAPAMRAGWRALSTRPRHAVAVPASGRPV 327
           PP    +S  + PG  P+T   H    + PA+R   R      R     PA+GRP+
Sbjct: 250 PPLNRYNSTGSPPGKPPSTQDEHINSGDTPAVRVKDRKPPIGTRSVSDCPANGRPI 305

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 155 PKPARR--PASVPHARRGRALDRPLDTPFNPRRLPCARAGGRCLLGHGTLSP 304
           P+  RR  P++ P  RR R    P   P  PRR P  +   R     G++SP
Sbjct: 379 PRKTRRLSPSASPPRRRHRP-SPPASPPPKPRRSPTPQQSNRARKSRGSVSP 429

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>W_SENDH (P69281) Protein W|
          Length = 318

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 166 PPAGISSSRAARPGT*PATG--HALQSEAPAMRAGWRALSTRPRHAVAVPASGRPV 327
           PP    +S  + PG  P+T   H    + PA+R   R      R     PA+GRP+
Sbjct: 250 PPLNRYNSTGSPPGKPPSTQDEHINSGDTPAVRVKDRKPPIGTRSVSDCPANGRPI 305

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>W_SENDF (P69285) Protein W|
          Length = 318

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 166 PPAGISSSRAARPGT*PATG--HALQSEAPAMRAGWRALSTRPRHAVAVPASGRPV 327
           PP    +S  + PG  P+T   H    + PA+R   R      R     PA+GRP+
Sbjct: 250 PPLNRYNSTGSPPGKPPSTQDEHINSGDTPAVRVKDRKPPIGTRSVSDCPANGRPI 305

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>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor|
          Length = 347

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 140 QHRAGPKPARRPASVPHARRGRALDRPLDTPFNPR 244
           QH+   +PA  P +  H ++G  L RP   P  PR
Sbjct: 307 QHQQQKRPAPTPGTQAHQQKGPPLPRPRVQPKPPR 341

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>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
 Frame = +1

Query: 103  TNHCTSFVNYSQAAQSWPQARPPAGISSSRAARPGT*PATG---------HALQ------ 237
            ++ C+   +YS   Q +PQ    +   +  +++PG+ P  G         H +Q      
Sbjct: 1417 SSECSESPSYSPQPQPFPQNSSQSAAITQPSSQPGSQPKLGPPQQGAQPPHQVQMPLYNF 1476

Query: 238  -SEAPAMRAGWRALSTRPRHAVAVPASGRPV 327
                PA  +    +   P H + +PA   P+
Sbjct: 1477 PQSPPAQYSPMHNMGLLPMHPLQIPAPSWPI 1507

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>RR12_ADICA (Q85FG4) Chloroplast 30S ribosomal protein S12|
          Length = 135

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 177 HQFLTRGAAGHLTGHWTRPSIRGACHARGLAGAVYSATARCRRSRVRKTS 326
           +Q L R A   L      P++RG    RG+   VY+ T +   S +RK +
Sbjct: 4   NQQLIRKARQRLESGTKSPALRGCPQRRGVCTRVYTTTPKKPNSALRKVA 53

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>DNAJ_BACST (Q45552) Chaperone protein dnaJ|
          Length = 380

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
 Frame = +2

Query: 143 HRAGPKPARRPASVPHARRGRALDRPLDTPFN--PRRLPCARAGG 271
           H  G KP  +P + PH      +     TPF     R  C   GG
Sbjct: 152 HGTGAKPGTKPETCPHCHGAGQISTEQSTPFGRIVNRRTCPYCGG 196

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>PHOSP_SEND6 (P14251) Phosphoprotein (Protein P)|
          Length = 568

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 166 PPAGISSSRAARPGT*PATG--HALQSEAPAMRAGWRALSTRPRHAVAVPASGRPV 327
           PP    +S    PG  P+T   H    + PA+R   R      R     PA+GRP+
Sbjct: 250 PPLNRYNSTGPPPGKPPSTQDEHINSGDTPAVRVKDRKPPIGTRSVSDCPANGRPI 305

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>RR12_PINTH (P52762) Chloroplast 30S ribosomal protein S12|
          Length = 123

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 180 QFLTRGAAGHLTGHWTRPSIRGACHARGLAGAVYSATARCRRSRVRKTS 326
           Q L R A   +      P++RG    RG+   VY+ T +   S +RK +
Sbjct: 5   QQLIRNARQPIENRKKSPALRGCPQRRGVCARVYTITPKKPNSALRKVA 53

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>RR12_PINKO (Q85X49) Chloroplast 30S ribosomal protein S12|
          Length = 123

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 180 QFLTRGAAGHLTGHWTRPSIRGACHARGLAGAVYSATARCRRSRVRKTS 326
           Q L R A   +      P++RG    RG+   VY+ T +   S +RK +
Sbjct: 5   QQLIRNARQPIENRKKSPALRGCPQRRGVCARVYTITPKKPNSALRKVA 53

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>CRLS1_MOUSE (Q80ZM8) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase)|
           (CLS)
          Length = 303

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -2

Query: 329 ATGLPDAGTATACRGRVDSARQPARMAGASD*RACPVAGQVPGRAA 192
           A  LP AG  T C G   +A +PA   G +  +A P A  VP  AA
Sbjct: 57  ALRLPGAGPRTHCSGAGKAAPEPAAGGGGAAAQA-PSARWVPASAA 101

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>TGM3L_HUMAN (O95932) Protein-glutamine gamma-glutamyltransferase 6 (EC|
           2.3.2.13) (Transglutaminase-3-like) (TGase-3-like)
           (Transglutaminase Y)
          Length = 706

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 203 RALDRPLDTPFNPRRLPCARAGGRCLLGHGTLSPFPRP 316
           +A++R      + RR+   RAGGRCL     L P  +P
Sbjct: 456 KAVNRLFGVEASGRRIWIRRAGGRCLWRDDLLEPATKP 493

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>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)|
          Length = 1430

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 154  PQARPPAGISSSRAARPGT*PATGHALQSEAPAMRAGWRALSTRPRHAVAVPASGRPVA 330
            P  +PPA +      +P + P +  A  ++ P+  A    + T+P  A A   SG PVA
Sbjct: 1304 PARQPPAAL-----IKPASSPPSQSASPAKPPSPGAPALQVPTKPPRAAASVVSGPPVA 1357

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>LTBP2_MOUSE (O08999) Latent transforming growth factor beta-binding protein 2|
           precursor (LTBP-2)
          Length = 1813

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 329 ATGLPDAGTATACRGRVDSARQPARMAGASD*RACP-VAGQ-VPGRAAREELMPA 171
           A  LPD G + A +    +   PAR+ G +  R  P + GQ +P   A E+++P+
Sbjct: 770 AETLPDKGDSRAVQITTSAPHLPARVPGDATGRPAPSLPGQGIPESPAEEQVIPS 824

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>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +1

Query: 166  PPAGISSSRAARPGT*PATGHALQSEAPAMRAGWRALSTRPRHAVAVPASG 318
            PP G  SS     G+ PA  H     AP+   GW     RP   V  P  G
Sbjct: 2008 PPRG--SSPILSEGSLPALLHLCSEVAPSTTKGWPETLERPVDPVTHPIRG 2056

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>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +1

Query: 145  QSWPQARPPAGISSSRAARPGT*PATGHALQSEAPAMRAGWRALSTRPRHAVAVPAS 315
            Q  PQ +P          +P   P  GH    E PA+R  +RA   RP    +VPAS
Sbjct: 2956 QPQPQPQPQPQPQPQPQPQPQPQPQNGHVAPGEYPAVR--FRAPQNRP----SVPAS 3006

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>MYCL1_HUMAN (P12524) L-myc-1 proto-oncogene protein|
          Length = 364

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 319 FRTRERRQRAVAE*TAPASPR-----AWQAPRIEGRVQWPVKCPAAP 194
           F  RER +RAV++  AP +PR     A  AP     ++     PAAP
Sbjct: 99  FSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAP 145

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>RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1469

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +1

Query: 4   ATTERMYNLQRSVTNYEQPEISYHILPVQPEYVTNHCTSFVNYSQAAQSWPQARPPAGIS 183
           A  E+++  + +  + EQP++      + P YVTN    F+   Q +Q      P + ++
Sbjct: 549 AKMEKVFRDRSATIHPEQPDLKPQDF-INPRYVTNAIADFLKTGQLSQYLDNTNPLSELT 607

Query: 184 SSR 192
             R
Sbjct: 608 HKR 610

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>NCPR_CAVPO (P37039) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)|
           (P450R)
          Length = 677

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +1

Query: 67  SYHILPVQPEYVTNHCTSFVNYSQAAQSWPQARPPAGISSSRAARP 204
           S HI  V  EY T   +  +N    A SW QA+ PAG +  RA  P
Sbjct: 467 SVHICAVVVEYETK--SGRINKG-VATSWLQAKDPAGENGRRALVP 509

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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
 Frame = +1

Query: 154 PQARPPAGISSSRAARPGT*PATGHALQSEAPAMRAGWRALSTRP--------RHAVAVP 309
           P A PPA  SS RA R       G       PA+ A   + ++RP         H V  P
Sbjct: 747 PAASPPAAPSSPRAPRTSPYGVPGSPATRVGPALPARRLSRASRPLSASQPSLPHGVPAP 806

Query: 310 ---ASGRPVA 330
              AS RP +
Sbjct: 807 SPAASARPAS 816

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>SP5_HUMAN (Q6BEB4) Transcription factor Sp5|
          Length = 398

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 329 ATGLPDAGTATACRGRVDSARQPARMAGASD*RACPVAGQVPG 201
           A+G+P +G + AC G   + R PA  A A+   A    G V G
Sbjct: 201 ASGVPGSGLSGACAGAPHAPRFPASAAAAAAAAAALQRGLVLG 243

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>AL_DROME (Q06453) Homeobox protein aristaless|
          Length = 408

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 24/102 (23%)
 Frame = +1

Query: 73  HILPVQPEYVTNHCTSF----VNYSQAAQSWPQARPPAGISSS--------RAARPGT*P 216
           H+LP     + +  +SF     N +   +  P  +PPA +  S          A P T P
Sbjct: 224 HMLPHGMAGMYSPSSSFQSLLANMTAVPRGTPLGKPPALLVGSPDLHSPNHMLASPPTSP 283

Query: 217 ATGHALQSE------------APAMRAGWRALSTRPRHAVAV 306
           A+GHA Q +             P M  G +     P+H V +
Sbjct: 284 ASGHASQHQQHPTAHPPPPQAPPQMPVGVQPAQLSPQHLVGI 325

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>SYG_CORGL (Q8NNC6) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 461

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 322 VFRTRERRQRAVAE*TAPASPRAWQAPRIEGRVQWPVKCPAAP 194
           +FRTRE  Q  +     P     W    I+ R+QW +     P
Sbjct: 204 IFRTREFEQMEMEFFVKPGEDEEWHQHWIDTRLQWYINLGIKP 246

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>BETA_RHIME (P54223) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 549

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 34  RSVTNYEQPEISYHILPVQPEY 99
           RS    +QP+I YH LPV   Y
Sbjct: 342 RSAPGVKQPDIQYHFLPVAISY 363

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>BETA_AGRT5 (Q8UH55) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 549

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 34  RSVTNYEQPEISYHILPVQPEY 99
           RS    +QP+I YH LPV   Y
Sbjct: 342 RSAPGLKQPDIQYHFLPVAISY 363

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>XERC1_RALSO (Q8Y3C8) Tyrosine recombinase xerC 1|
          Length = 329

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 133 SQAAQSWPQARPPAGISSSRAARPGT*PATGHALQSEAPAMRAGWRALSTR-PRHAVA-- 303
           ++A  +W   RP       + A+P   P   HAL   A   R   R + TR  R+A+A  
Sbjct: 212 AEALAAWLAVRP-------QLAQPDAAPEDAHALFLSARGKRLAQRQIQTRMKRNAIAAG 264

Query: 304 VPASGRP 324
           VPA   P
Sbjct: 265 VPADVHP 271

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>ELN_MOUSE (P54320) Elastin precursor (Tropoelastin)|
          Length = 860

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 287 GRVDSARQPARMAGASD*RACPVAGQVPGRAAREELMPAGGRAWGQLCA 141
           G +  A  P R+AGA+   A   A +   +AA+  L  AGG   G L A
Sbjct: 694 GGLGGAGVPGRVAGAAPPAAAAAAAKAAAKAAQYGLGGAGGLGAGGLGA 742


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,357,201
Number of Sequences: 219361
Number of extensions: 1059703
Number of successful extensions: 4020
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 3846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4014
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result