>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 239     ccgaggcgcctgccatgcgcgc 260
               ||||||||||||||||||||||
Sbjct: 1701905 ccgaggcgcctgccatgcgcgc 1701884

>gb|AC121934.4| Mus musculus BAC clone RP24-207A18 from chromosome 5, complete sequence
          Length = 152037

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   agcagcacagagctggcccca 158
             |||||||||||||||||||||
Sbjct: 48284 agcagcacagagctggcccca 48264

>gb|AC147632.3| Mus musculus BAC clone RP23-326H18 from chromosome 5, complete sequence
          Length = 185519

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 138   agcagcacagagctggcccca 158
             |||||||||||||||||||||
Sbjct: 36611 agcagcacagagctggcccca 36631

>gb|AC093904.3| Homo sapiens BAC clone RP11-734K21 from 2, complete sequence
          Length = 191827

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 135    tcaagcagcacagagctggcc 155
              |||||||||||||||||||||
Sbjct: 134168 tcaagcagcacagagctggcc 134148

>ref|NM_008989.1| Mus musculus purine rich element binding protein A (Pura), mRNA
          Length = 1609

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 gcgggctggcgggcgctgtc 278
           ||||||||||||||||||||
Sbjct: 380 gcgggctggcgggcgctgtc 361

>gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosome 18, complete
             sequence
          Length = 136832

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   gcgggctggcgggcgctgtc 278
             ||||||||||||||||||||
Sbjct: 22015 gcgggctggcgggcgctgtc 22034

>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete sequence
          Length = 193184

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    gcgggctggcgggcgctgtc 278
              ||||||||||||||||||||
Sbjct: 127454 gcgggctggcgggcgctgtc 127473

>ref|XM_987720.1| PREDICTED: Mus musculus purine rich element binding protein A,
           transcript variant 3 (Pura), mRNA
          Length = 5560

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 gcgggctggcgggcgctgtc 278
           ||||||||||||||||||||
Sbjct: 48  gcgggctggcgggcgctgtc 29

>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 150    ctggccccaagcccgcccgccggc 173
              |||||||||||||||| |||||||
Sbjct: 101686 ctggccccaagcccgcgcgccggc 101709

>emb|Z84474.1|HS111M5 Human DNA sequence from clone RP1-111M5 on chromosome 6p21.3 Contains an
              RPL13 (60S Ribosomal protein L13, BBC1) pseudogene, a zinc
              finger protein pseudogene, the 3' end of the RFP gene for
              ret finger protein, four CpG islands, ESTs, STSs and GSSs,
              complete sequence
          Length = 107526

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    agttttgtaaactacagtca 137
              ||||||||||||||||||||
Sbjct: 105472 agttttgtaaactacagtca 105491

>emb|BX119924.8| Human DNA sequence from clone DASS-46L4 on chromosome 6, complete
             sequence
          Length = 92058

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   agttttgtaaactacagtca 137
             ||||||||||||||||||||
Sbjct: 82014 agttttgtaaactacagtca 82033

>emb|BX000360.7| Human DNA sequence from clone DAQB-5M14 on chromosome 6 Contains the
             ZNF463P pseudogene for zinc finger protein 463, the HCG14
             gene for HLA complex group 14, the 3' end of the RFP gene
             for ret finger protein and 1 CpG island, complete sequence
          Length = 44401

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   agttttgtaaactacagtca 137
             ||||||||||||||||||||
Sbjct: 42314 agttttgtaaactacagtca 42333

>emb|AL662871.9| Human DNA sequence from clone XXbac-322C17 on chromosome 6 contains the
             RFP gene for ret finger protein gene, a zinc finger
             protein pseudogene, a novel protein and three CpG islands,
             complete sequence
          Length = 103158

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   agttttgtaaactacagtca 137
             ||||||||||||||||||||
Sbjct: 49224 agttttgtaaactacagtca 49243

>emb|AL662859.5| Human DNA sequence from clone XXbac-196D17 on chromosome 6 contains a
             zinc finger protein pseudogene, the RFP gene for ret
             finger protein and three CpG islands, complete sequence
          Length = 61233

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   agttttgtaaactacagtca 137
             ||||||||||||||||||||
Sbjct: 47390 agttttgtaaactacagtca 47409

>emb|CR936965.7| Human DNA sequence from clone DAMA-219M18 on chromosome 6, complete
           sequence
          Length = 26598

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 agttttgtaaactacagtca 137
           ||||||||||||||||||||
Sbjct: 270 agttttgtaaactacagtca 289

>emb|CR759942.12| Human DNA sequence from clone DAAP-182E11 on chromosome 6, complete
             sequence
          Length = 69422

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   agttttgtaaactacagtca 137
             ||||||||||||||||||||
Sbjct: 46128 agttttgtaaactacagtca 46147

>gb|AE012167.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 75 of
            460 of the complete genome
          Length = 10579

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 158  aagcccgcccgccggccggcatca 181
            |||||||||||| |||||||||||
Sbjct: 8101 aagcccgcccgcaggccggcatca 8078

>gb|AC091970.3| Homo sapiens chromosome 5 clone RP11-509B9, complete sequence
          Length = 170119

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    caagcagcacagagctggcc 155
              ||||||||||||||||||||
Sbjct: 140751 caagcagcacagagctggcc 140770

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 158     aagcccgcccgccggccggcatca 181
               |||||||||||| |||||||||||
Sbjct: 4208964 aagcccgcccgcaggccggcatca 4208987

>dbj|AK075821.1| Mus musculus adult male small intestine cDNA, RIKEN full-length
           enriched library, clone:2010110G05 product:purine rich
           element binding protein A, full insert sequence
          Length = 1268

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 gcgggctggcgggcgctgtc 278
           ||||||||||||||||||||
Sbjct: 49  gcgggctggcgggcgctgtc 30

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 17       gaatgtataacctgcaaagg 36
                ||||||||||||||||||||
Sbjct: 16369953 gaatgtataacctgcaaagg 16369972

>gb|AC079610.4| Homo sapiens BAC clone RP11-105N14 from 2, complete sequence
          Length = 161031

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gcgcgcgggctggcgggcgc 274
             ||||||||||||||||||||
Sbjct: 11680 gcgcgcgggctggcgggcgc 11699

>dbj|AP006237.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0008D07
          Length = 156874

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     gaatgtataacctgcaaagg 36
              ||||||||||||||||||||
Sbjct: 132030 gaatgtataacctgcaaagg 132049

>emb|CR628394.17| Zebrafish DNA sequence from clone DKEY-204A24 in linkage group 19,
              complete sequence
          Length = 242800

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    tgtacaagttttgtaaacta 131
              ||||||||||||||||||||
Sbjct: 131409 tgtacaagttttgtaaacta 131428

>gb|U02098.1|MMU02098 Mus musculus Pur-alpha mRNA, complete cds
          Length = 1609

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 gcgggctggcgggcgctgtc 278
           ||||||||||||||||||||
Sbjct: 380 gcgggctggcgggcgctgtc 361

>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 260     cgggctggcgggcgctgtct 279
               ||||||||||||||||||||
Sbjct: 1219540 cgggctggcgggcgctgtct 1219559


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,004,871
Number of Sequences: 3902068
Number of extensions: 2004871
Number of successful extensions: 38646
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38449
Number of HSP's gapped (non-prelim): 197
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)