ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet21c04 |
|---|---|
| Clone Library Name | barley_pub |
>TOM20_SOLTU (P92792) Mitochondrial import receptor subunit TOM20 (Translocase| of outer membrane 20 kDa subunit) Length = 204 Score = 129 bits (325), Expect = 3e-30 Identities = 65/107 (60%), Positives = 78/107 (72%) Frame = +2 Query: 134 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 313 +RL FF+ A K+A+ TY +NPLDADNLTRWGGALLELSQ ES + + DA SKL+EA Sbjct: 8 DRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEA 67 Query: 314 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVD 454 L ++P K DALWCLGNA TS F T + +A FEKAT CFQ+A D Sbjct: 68 LTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFD 114
>TO203_ARATH (P82874) Mitochondrial import receptor subunit TOM20-3 (Translocase| of outer membrane 20 kDa subunit 3) Length = 202 Score = 112 bits (279), Expect = 6e-25 Identities = 53/107 (49%), Positives = 74/107 (69%) Frame = +2 Query: 134 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 313 +R+ F+ + A+ TY NPLDADNLTRWGG LLELSQ H+ ++ + +++A +K +EA Sbjct: 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA 67 Query: 314 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVD 454 L IDP K +A+WC+GNA TS F T + +A F+ AT FQ+AVD Sbjct: 68 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114
>TO202_ARATH (P82873) Mitochondrial import receptor subunit TOM20-2 (Translocase| of outer membrane 20 kDa subunit 2) Length = 210 Score = 110 bits (274), Expect = 2e-24 Identities = 55/105 (52%), Positives = 71/105 (67%) Frame = +2 Query: 134 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 313 ERL F+ A K ++A Y +PLD++NL +WGGALLELSQ PE+ L DA SKL+EA Sbjct: 9 ERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEA 68 Query: 314 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRA 448 L I+P K ALWC+ NA T+ F+ + +A E F+KAT FQRA Sbjct: 69 LTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRA 113
>TO204_ARATH (P82805) Mitochondrial import receptor subunit TOM20-4 (Translocase| of outer membrane 20 kDa subunit 4) Length = 187 Score = 108 bits (271), Expect = 5e-24 Identities = 59/107 (55%), Positives = 75/107 (70%) Frame = +2 Query: 134 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 313 ERL F+ A K A+ATY +NPLDA+NLTRW GALLELSQ P+ + + +A KL EA Sbjct: 8 ERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQTEPKQM--ILEAILKLGEA 65 Query: 314 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAVD 454 L IDP K DALW +GNA S GF +S+ +A++ FEKA+ FQ AV+ Sbjct: 66 LVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVE 112
>TO201_ARATH (P82872) Mitochondrial import receptor subunit TOM20-1 (Translocase| of outer membrane 20 kDa subunit 1) Length = 188 Score = 99.4 bits (246), Expect = 4e-21 Identities = 56/106 (52%), Positives = 68/106 (64%) Frame = +2 Query: 134 ERLFFFDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEA 313 ++L FF+ K A+ TY NP DADNL RWG ALLELSQ N +SLK ++DA SKL++A Sbjct: 2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDA 61 Query: 314 LRIDPNKADALWCLGNALTSRGFFTSETVQANECFEKATGCFQRAV 451 + IDP K DA+WCLGNA TS T + QA F A F AV Sbjct: 62 ILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAV 107
>SERC_ARATH (Q96255) Phosphoserine aminotransferase, chloroplast precursor (EC| 2.6.1.52) (PSAT) Length = 430 Score = 32.7 bits (73), Expect = 0.45 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Frame = +2 Query: 134 ERLFFFDLACKTAKATYDENPL---DADNLTRWGGALLELSQM-HNGPESLKCLEDAESK 301 ER+F F AT EN L AD L W G+ + + +M H G E L ++ AES Sbjct: 71 ERVFNF----AAGPATLPENVLLKAQAD-LYNWRGSGMSVMEMSHRGKEFLSIIQKAESD 125 Query: 302 LDEALRIDPNKADALWCLGNALT 370 L + L I P + L+ G A T Sbjct: 126 LRQLLEI-PQEYSVLFLQGGATT 147
>SEC_ARATH (Q9M8Y0) Probable UDP-N-acetylglucosamine--peptide| N-acetylglucosaminyltransferase SEC (EC 2.4.1.-) (Protein SECRET AGENT) Length = 977 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/77 (28%), Positives = 33/77 (42%) Frame = +2 Query: 149 FDLACKTAKATYDENPLDADNLTRWGGALLELSQMHNGPESLKCLEDAESKLDEALRIDP 328 F A + + Y NPL DNL G +L + C+ ++ +EALRI P Sbjct: 69 FKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYD------MCI----ARNEEALRIQP 118 Query: 329 NKADALWCLGNALTSRG 379 A+ + NA +G Sbjct: 119 QFAECYGNMANAWKEKG 135
>SYT_CORGL (Q8NPZ0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 695 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +2 Query: 215 TRWGGALLELSQMHNGPESLKCLEDAESKLDEALRIDPNKA 337 T G A+ EL + GPE++ C +DAE +L + + A Sbjct: 29 TAIGAAMRELDLPNKGPEAIVCAKDAEGQLKDLSHVPETTA 69
>US02_EHV1K (P32517) US1 protein| Length = 303 Score = 30.0 bits (66), Expect = 2.9 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +1 Query: 130 PGEALLLRPRLQDRQGHLRREPARRRQPDAMGRRSAGAVADA*RPGEPQVP--RRCG 294 PG L PR + +G +R R R P RS A A RPG+P+ P RR G Sbjct: 233 PGRPL---PRRRPSEGGMRAPRRRSRAPAPA--RSTAAAATPPRPGDPRAPAARRAG 284
>L52_ADE02 (P03262) Late L1 52 kDa protein| Length = 415 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +1 Query: 148 LRPRLQDRQGHLRREPARRRQPDAMGRRSAGAVADA*RPGEPQVPRR 288 +RP Q RQ +R+ R P A + ADA G+ + PRR Sbjct: 8 MRPPPQQRQEQEQRQTCRAPSPSPTASGGATSAADAAADGDYEPPRR 54
>KCNKC_RAT (Q9ERS1) Potassium channel subfamily K member 12 (Tandem pore| domain halothane-inhibited potassium channel 2) (THIK-2) Length = 430 Score = 28.9 bits (63), Expect = 6.4 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Frame = +2 Query: 188 ENPLDADNLTRWGGALLELSQMHN--GPESLKCLEDAESKLDEALRIDPNK-----ADAL 346 E+P +A+ RWG L S H PE L E+ L +R D + A Sbjct: 61 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF 120 Query: 347 WCLGNALTSRGF-FTSETVQANECFEKATGCF 439 + +G +++ GF T+ + F A G F Sbjct: 121 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLF 152
>KCNKC_HUMAN (Q9HB15) Potassium channel subfamily K member 12 (Tandem pore| domain halothane-inhibited potassium channel 2) (THIK-2) Length = 430 Score = 28.9 bits (63), Expect = 6.4 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Frame = +2 Query: 188 ENPLDADNLTRWGGALLELSQMHN--GPESLKCLEDAESKLDEALRIDPNK-----ADAL 346 E+P +A+ RWG L S H PE L E+ L +R D + A Sbjct: 61 ESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAF 120 Query: 347 WCLGNALTSRGF-FTSETVQANECFEKATGCF 439 + +G +++ GF T+ + F A G F Sbjct: 121 YFVGTVVSTIGFGMTTPATVGGKAFLIAYGLF 152
>ZN221_HUMAN (Q9UK13) Zinc finger protein 221| Length = 617 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 218 RWGGALLELSQMHNGPESLKCLE 286 RW LL Q+H+G +S KC E Sbjct: 404 RWSSCLLNHQQVHSGQKSFKCEE 426
>ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (Deleted in U| twenty twenty) Length = 1651 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%) Frame = +1 Query: 148 LRPRLQD---RQGHLRREPARRRQP 213 L+P LQD GH++ +P RRRQP Sbjct: 1271 LQPMLQDCPEETGHMQHQPDRRRQP 1295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,801,211 Number of Sequences: 219361 Number of extensions: 859833 Number of successful extensions: 2786 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2649 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2785 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
