| Clone Name | baet21c04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071344.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091E24, full insert sequence Length = 1114 Score = 303 bits (153), Expect = 3e-79 Identities = 303/353 (85%) Strand = Plus / Plus Query: 103 cgccatggacatggcagcgatgaacgacccggagaggctcttcttcttcgacctcgcctg 162 |||||||||||||| |||||||| ||| || |||||| | |||||||||||||| || || Sbjct: 134 cgccatggacatgggagcgatgagcgatcctgagaggatgttcttcttcgacctggcatg 193 Query: 163 caagaccgccaaggccacctacgacgagaacccgctcgacgccgacaacctgacgcgatg 222 | ||| |||||||| ||||||||| ||||||||| |||||||||||| || |||| || Sbjct: 194 ccagaacgccaaggtcacctacgaacagaacccgcacgacgccgacaatctcgcgcggtg 253 Query: 223 gggcggcgctctgctggagctgtcgcagatgcataacggcccggagagcctcaagtgcct 282 ||| ||||| ||||| ||||| |||||||||| |||||||| ||||||||||||||||| Sbjct: 254 gggaggcgcgctgctcgagctctcgcagatgcggaacggccccgagagcctcaagtgcct 313 Query: 283 cgaagatgcggagtctaagctggatgaagcactgagaattgatcccaacaaggctgatgc 342 ||||||||||| || |||||||| |||||||||| ||||||||||| ||||| ||||| Sbjct: 314 agaagatgcggaatccaagctggaggaagcactgaaaattgatcccatgaaggcggatgc 373 Query: 343 actctggtgcttggggaatgccctgacctctcgtggattcttcacttcggaaactgtcca 402 || ||||||||||| ||||| | |||||||| ||||||||||||||| || |||||| | Sbjct: 374 gctttggtgcttgggaaatgcacagacctctcatggattcttcacttcagacactgtcaa 433 Query: 403 ggctaatgaatgctttgaaaaagcaactggttgtttccagagggctgttgatg 455 ||| ||||||| ||||||||| ||||| |||||||||| ||||||||||| Sbjct: 434 ggccaatgaattctttgaaaaggcaacgcagtgtttccagaaggctgttgatg 486
>gb|BT016434.1| Zea mays clone Contig267 mRNA sequence Length = 1065 Score = 170 bits (86), Expect = 3e-39 Identities = 164/190 (86%) Strand = Plus / Plus Query: 199 cgacgccgacaacctgacgcgatggggcggcgctctgctggagctgtcgcagatgcataa 258 ||||||||||||| |||||||||||||||| || ||||||||||| ||||| ||| ||| Sbjct: 178 cgacgccgacaacttgacgcgatggggcggagcgctgctggagctatcgcaactgcgtaa 237 Query: 259 cggcccggagagcctcaagtgcctcgaagatgcggagtctaagctggatgaagcactgag 318 |||||| || ||||||||| |||| |||||||||| | |||||||| || |||||| Sbjct: 238 cggccccgacagcctcaagctcctccaagatgcggaagccaagctggaggaggcactgca 297 Query: 319 aattgatcccaacaaggctgatgcactctggtgcttggggaatgccctgacctctcgtgg 378 |||||||||||||||| ||||||| |||||||||||||| ||||| | ||| |||| ||| Sbjct: 298 aattgatcccaacaagtctgatgcgctctggtgcttgggaaatgctcagacttctcatgg 357 Query: 379 attcttcact 388 |||||||||| Sbjct: 358 attcttcact 367
>gb|AY104647.1| Zea mays PCO146189 mRNA sequence Length = 1113 Score = 170 bits (86), Expect = 3e-39 Identities = 236/286 (82%) Strand = Plus / Plus Query: 103 cgccatggacatggcagcgatgaacgacccggagaggctcttcttcttcgacctcgcctg 162 ||||||||| |||| || ||||| |||| | ||| |||| ||||||||||| | ||||| Sbjct: 195 cgccatggagatgggagggatgagcgacgctgagcggctgttcttcttcgagatggcctg 254 Query: 163 caagaccgccaaggccacctacgacgagaacccgctcgacgccgacaacctgacgcgatg 222 ||||| | || ||| | | ||||| ||||||| ||||||||||||||||||||| || Sbjct: 255 caagaactccgaggtcgcgtacgagcagaaccccaacgacgccgacaacctgacgcggtg 314 Query: 223 gggcggcgctctgctggagctgtcgcagatgcataacggcccggagagcctcaagtgcct 282 ||||||||| |||||||||||||||||| | | | |||||| || ||||||||| || Sbjct: 315 gggcggcgcgctgctggagctgtcgcaggtccgaaccggccccgacagcctcaagcttct 374 Query: 283 cgaagatgcggagtctaagctggatgaagcactgagaattgatcccaacaaggctgatgc 342 ||||||||||| | || ||||| || ||||| |||||||||||||||| | ||||| Sbjct: 375 tgaagatgcggaagccaaactggaggaggcacttcaaattgatcccaacaagtccgatgc 434 Query: 343 actctggtgcttggggaatgccctgacctctcgtggattcttcact 388 ||||||||||||||| ||||| | |||||||| ||||||||||||| Sbjct: 435 actctggtgcttgggaaatgctcagacctctcatggattcttcact 480
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 147 bits (74), Expect = 4e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 286 agatgcggagtctaagctggatgaagcactgagaattgatcccaacaaggctgatgcact 345 ||||||||| || |||||||| |||||||||| ||||||||||| ||||| ||||| || Sbjct: 34557 agatgcggaatccaagctggaggaagcactgaaaattgatcccatgaaggcggatgcgct 34616 Query: 346 ctggtgcttggggaatgccctgacctctcgtggattcttcacttcggaaactgtccaggc 405 ||||||||||| ||||| | |||||||| ||||||||||||||| || |||||| |||| Sbjct: 34617 ttggtgcttgggaaatgcacagacctctcatggattcttcacttcagacactgtcaaggc 34676 Query: 406 taatgaatgctttgaaaaagcaactggttgtttccagagggctgttgatg 455 ||||||| ||||||||| ||||| |||||||||| ||||||||||| Sbjct: 34677 caatgaattctttgaaaaggcaacccagtgtttccagaaggctgttgatg 34726 Score = 99.6 bits (50), Expect = 8e-18 Identities = 92/106 (86%) Strand = Plus / Plus Query: 103 cgccatggacatggcagcgatgaacgacccggagaggctcttcttcttcgacctcgcctg 162 |||||||||||||| |||||||| ||| || |||||| | |||||||||||||| || || Sbjct: 33153 cgccatggacatgggagcgatgagcgatcctgagaggatgttcttcttcgacctggcatg 33212 Query: 163 caagaccgccaaggccacctacgacgagaacccgctcgacgccgac 208 | ||| |||||||| ||||||||| ||||||||| |||||||||| Sbjct: 33213 ccagaacgccaaggtcacctacgaacagaacccgcacgacgccgac 33258 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 215 acgcgatggggcggcgctctgctggagctgtcgcagatgcataacggcccggagagcctc 274 ||||| ||||| ||||| ||||| ||||| |||||||||| |||||||| ||||||||| Sbjct: 33412 acgcggtggggaggcgcgctgctcgagctctcgcagatgcggaacggccccgagagcctc 33471 Query: 275 aagtgcctcgaag 287 |||||||| |||| Sbjct: 33472 aagtgcctagaag 33484
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 147 bits (74), Expect = 4e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 286 agatgcggagtctaagctggatgaagcactgagaattgatcccaacaaggctgatgcact 345 ||||||||| || |||||||| |||||||||| ||||||||||| ||||| ||||| || Sbjct: 40235605 agatgcggaatccaagctggaggaagcactgaaaattgatcccatgaaggcggatgcgct 40235664 Query: 346 ctggtgcttggggaatgccctgacctctcgtggattcttcacttcggaaactgtccaggc 405 ||||||||||| ||||| | |||||||| ||||||||||||||| || |||||| |||| Sbjct: 40235665 ttggtgcttgggaaatgcacagacctctcatggattcttcacttcagacactgtcaaggc 40235724 Query: 406 taatgaatgctttgaaaaagcaactggttgtttccagagggctgttgatg 455 ||||||| ||||||||| ||||| |||||||||| ||||||||||| Sbjct: 40235725 caatgaattctttgaaaaggcaacccagtgtttccagaaggctgttgatg 40235774 Score = 99.6 bits (50), Expect = 8e-18 Identities = 92/106 (86%) Strand = Plus / Plus Query: 103 cgccatggacatggcagcgatgaacgacccggagaggctcttcttcttcgacctcgcctg 162 |||||||||||||| |||||||| ||| || |||||| | |||||||||||||| || || Sbjct: 40234201 cgccatggacatgggagcgatgagcgatcctgagaggatgttcttcttcgacctggcatg 40234260 Query: 163 caagaccgccaaggccacctacgacgagaacccgctcgacgccgac 208 | ||| |||||||| ||||||||| ||||||||| |||||||||| Sbjct: 40234261 ccagaacgccaaggtcacctacgaacagaacccgcacgacgccgac 40234306 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 215 acgcgatggggcggcgctctgctggagctgtcgcagatgcataacggcccggagagcctc 274 ||||| ||||| ||||| ||||| ||||| |||||||||| |||||||| ||||||||| Sbjct: 40234460 acgcggtggggaggcgcgctgctcgagctctcgcagatgcggaacggccccgagagcctc 40234519 Query: 275 aagtgcctcgaag 287 |||||||| |||| Sbjct: 40234520 aagtgcctagaag 40234532
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 147 bits (74), Expect = 4e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 286 agatgcggagtctaagctggatgaagcactgagaattgatcccaacaaggctgatgcact 345 ||||||||| || |||||||| |||||||||| ||||||||||| ||||| ||||| || Sbjct: 101383 agatgcggaatccaagctggaggaagcactgaaaattgatcccatgaaggcggatgcgct 101442 Query: 346 ctggtgcttggggaatgccctgacctctcgtggattcttcacttcggaaactgtccaggc 405 ||||||||||| ||||| | |||||||| ||||||||||||||| || |||||| |||| Sbjct: 101443 ttggtgcttgggaaatgcacagacctctcatggattcttcacttcagacactgtcaaggc 101502 Query: 406 taatgaatgctttgaaaaagcaactggttgtttccagagggctgttgatg 455 ||||||| ||||||||| ||||| |||||||||| ||||||||||| Sbjct: 101503 caatgaattctttgaaaaggcaacccagtgtttccagaaggctgttgatg 101552 Score = 99.6 bits (50), Expect = 8e-18 Identities = 92/106 (86%) Strand = Plus / Plus Query: 103 cgccatggacatggcagcgatgaacgacccggagaggctcttcttcttcgacctcgcctg 162 |||||||||||||| |||||||| ||| || |||||| | |||||||||||||| || || Sbjct: 99979 cgccatggacatgggagcgatgagcgatcctgagaggatgttcttcttcgacctggcatg 100038 Query: 163 caagaccgccaaggccacctacgacgagaacccgctcgacgccgac 208 | ||| |||||||| ||||||||| ||||||||| |||||||||| Sbjct: 100039 ccagaacgccaaggtcacctacgaacagaacccgcacgacgccgac 100084 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 215 acgcgatggggcggcgctctgctggagctgtcgcagatgcataacggcccggagagcctc 274 ||||| ||||| ||||| ||||| ||||| |||||||||| |||||||| ||||||||| Sbjct: 100238 acgcggtggggaggcgcgctgctcgagctctcgcagatgcggaacggccccgagagcctc 100297 Query: 275 aagtgcctcgaag 287 |||||||| |||| Sbjct: 100298 aagtgcctagaag 100310
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 147 bits (74), Expect = 4e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 286 agatgcggagtctaagctggatgaagcactgagaattgatcccaacaaggctgatgcact 345 ||||||||| || |||||||| |||||||||| ||||||||||| ||||| ||||| || Sbjct: 26955 agatgcggaatccaagctggaggaagcactgaaaattgatcccatgaaggcggatgcgct 27014 Query: 346 ctggtgcttggggaatgccctgacctctcgtggattcttcacttcggaaactgtccaggc 405 ||||||||||| ||||| | |||||||| ||||||||||||||| || |||||| |||| Sbjct: 27015 ttggtgcttgggaaatgcacagacctctcatggattcttcacttcagacactgtcaaggc 27074 Query: 406 taatgaatgctttgaaaaagcaactggttgtttccagagggctgttgatg 455 ||||||| ||||||||| ||||| |||||||||| ||||||||||| Sbjct: 27075 caatgaattctttgaaaaggcaacccagtgtttccagaaggctgttgatg 27124 Score = 99.6 bits (50), Expect = 8e-18 Identities = 92/106 (86%) Strand = Plus / Plus Query: 103 cgccatggacatggcagcgatgaacgacccggagaggctcttcttcttcgacctcgcctg 162 |||||||||||||| |||||||| ||| || |||||| | |||||||||||||| || || Sbjct: 25551 cgccatggacatgggagcgatgagcgatcctgagaggatgttcttcttcgacctggcatg 25610 Query: 163 caagaccgccaaggccacctacgacgagaacccgctcgacgccgac 208 | ||| |||||||| ||||||||| ||||||||| |||||||||| Sbjct: 25611 ccagaacgccaaggtcacctacgaacagaacccgcacgacgccgac 25656 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 215 acgcgatggggcggcgctctgctggagctgtcgcagatgcataacggcccggagagcctc 274 ||||| ||||| ||||| ||||| ||||| |||||||||| |||||||| ||||||||| Sbjct: 25810 acgcggtggggaggcgcgctgctcgagctctcgcagatgcggaacggccccgagagcctc 25869 Query: 275 aagtgcctcgaag 287 |||||||| |||| Sbjct: 25870 aagtgcctagaag 25882
>gb|BT017419.1| Zea mays clone EL01N0402C12.c mRNA sequence Length = 726 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 318 gaattgatcccaacaaggctgatgcactctggtgcttggggaatgccctgacctctcgtg 377 ||||||||||||||||| | |||||||||||||||||||| ||||| | |||||||| || Sbjct: 8 gaattgatcccaacaagtccgatgcactctggtgcttgggaaatgctcagacctctcatg 67 Query: 378 gattcttcact 388 ||||||||||| Sbjct: 68 gattcttcact 78
>emb|CT737180.5| M.truncatula DNA sequence from clone MTH2-117L19 on chromosome 3, complete sequence Length = 130239 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 347 tggtgcttggggaatgccctgacctctcgtggatt 381 |||||||||||||||||||| || ||| ||||||| Sbjct: 19615 tggtgcttggggaatgcccttacgtcttgtggatt 19649
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 157 cgcctgcaagaccgccaaggccacct 182 ||||||||||||||||| |||||||| Sbjct: 4661880 cgcctgcaagaccgccacggccacct 4661855
>emb|BX571974.6| Zebrafish DNA sequence from clone DKEY-29P4 in linkage group 12, complete sequence Length = 267018 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 399 tccaggctaatgaatgctttga 420 |||||||||||||||||||||| Sbjct: 219122 tccaggctaatgaatgctttga 219101
>ref|XM_684032.1| PREDICTED: Danio rerio similar to CG15329-PA (LOC560635), mRNA Length = 1726 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 399 tccaggctaatgaatgctttga 420 |||||||||||||||||||||| Sbjct: 872 tccaggctaatgaatgctttga 893
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 aacccgctcgacgccgacaacctgac 216 ||||||| |||||||||||||||||| Sbjct: 2030962 aacccgcacgacgccgacaacctgac 2030987
>gb|BC042276.1| Xenopus laevis serine hydroxymethyltransferase 1 (soluble), mRNA (cDNA clone MGC:53442 IMAGE:5571917), complete cds Length = 1738 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 gccctgacctctcgtggattc 382 ||||||||||||||||||||| Sbjct: 1320 gccctgacctctcgtggattc 1340
>gb|AC105173.10| Mus musculus chromosome 8, clone RP23-319J15, complete sequence Length = 186945 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tgtttccagagggctgttga 453 |||||||||||||||||||| Sbjct: 13641 tgtttccagagggctgttga 13622
>gb|BT017884.1| Zea mays clone EL01N0514G01.c mRNA sequence Length = 627 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ccaaggccacctacgacgag 190 |||||||||||||||||||| Sbjct: 71 ccaaggccacctacgacgag 90
>ref|XM_364795.1| Magnaporthe grisea 70-15 hypothetical protein (MG09640.4) partial mRNA Length = 1599 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cctgcaagaccgccaaggcc 178 |||||||||||||||||||| Sbjct: 1385 cctgcaagaccgccaaggcc 1404
>gb|AC134442.4| Mus musculus BAC clone RP24-104I4 from chromosome 8, complete sequence Length = 153086 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tgtttccagagggctgttga 453 |||||||||||||||||||| Sbjct: 82609 tgtttccagagggctgttga 82590
>gb|AC132910.8| Mus musculus chromosome 17, clone RP24-301I14, complete sequence Length = 209975 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cggagaggctcttcttcttc 151 |||||||||||||||||||| Sbjct: 178944 cggagaggctcttcttcttc 178925
>ref|XM_546282.2| PREDICTED: Canis familiaris similar to Heart- and neural crest derivatives-expressed protein 1 (Extraembryonic tissues, heart, autonomic nervous system and neural crest derivatives-expressed protein 1) (eHAND) (LOC489164), mRNA Length = 1521 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tggggcggcgctctgctgga 240 |||||||||||||||||||| Sbjct: 254 tggggcggcgctctgctgga 235
>gb|AY197475.1| Helicobacter pylori strain GU93-213 Hsp12 variant C (hsp12) gene, complete cds Length = 1341 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 ggctaatgaatgctttgaaaaagc 426 |||||| ||||||||||||||||| Sbjct: 319 ggctaaggaatgctttgaaaaagc 342
>gb|AC099676.2| Homo sapiens chromosome 1 clone RP11-465N4, complete sequence Length = 204679 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 416 tttgaaaaagcaactggttgtttc 439 |||||||||||||||| ||||||| Sbjct: 42018 tttgaaaaagcaactgcttgtttc 41995
>gb|AC090797.5| Homo sapiens chromosome 8, clone RP11-586K2, complete sequence Length = 193929 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 aagctggatgaagcactgagaatt 322 |||||| ||||||||||||||||| Sbjct: 64693 aagctgcatgaagcactgagaatt 64716
>gb|AC020807.2| Mus musculus chromosome 18 clone RG-MBAC_225G20, complete sequence Length = 81195 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 agcaactggttgtttccagagggc 447 |||||||||||| ||||||||||| Sbjct: 59211 agcaactggttgcttccagagggc 59234
>gb|AC090980.5| Homo sapiens chromosome 8, clone RP11-433O22, complete sequence Length = 182881 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 aagctggatgaagcactgagaatt 322 |||||| ||||||||||||||||| Sbjct: 128680 aagctgcatgaagcactgagaatt 128703
>gb|AC091750.1|AC091750 Mus musculus chromosome 18 clone unknown, complete sequence Length = 81195 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 agcaactggttgtttccagagggc 447 |||||||||||| ||||||||||| Sbjct: 59211 agcaactggttgcttccagagggc 59234
>gb|DQ003082.1| Homo sapiens matrix metalloproteinase 16 (membrane-inserted) (MMP16) gene, complete cds Length = 290137 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 aagctggatgaagcactgagaatt 322 |||||| ||||||||||||||||| Sbjct: 63550 aagctgcatgaagcactgagaatt 63527
>gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome 17, complete sequence Length = 157937 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cggagaggctcttcttcttc 151 |||||||||||||||||||| Sbjct: 41244 cggagaggctcttcttcttc 41225
>gb|AY104013.1| Zea mays PCO085678 mRNA sequence Length = 736 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ccaaggccacctacgacgag 190 |||||||||||||||||||| Sbjct: 135 ccaaggccacctacgacgag 154
>emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chromosome 18, complete sequence Length = 174264 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 agcaactggttgtttccagagggc 447 |||||||||||| ||||||||||| Sbjct: 8827 agcaactggttgcttccagagggc 8850
>emb|AL732492.11| Mouse DNA sequence from clone RP23-307C17 on chromosome 4, complete sequence Length = 166942 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 gctttgaaaaagcaactggttgtt 437 |||||||||||||||||| ||||| Sbjct: 154816 gctttgaaaaagcaactgtttgtt 154793
>gb|AC090534.10| Mus musculus Strain C57BL6/J chromosome 18 BAC, RP23-233F17, complete sequence Length = 176773 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 agcaactggttgtttccagagggc 447 |||||||||||| ||||||||||| Sbjct: 131443 agcaactggttgcttccagagggc 131466 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,496,543 Number of Sequences: 3902068 Number of extensions: 3496543 Number of successful extensions: 52768 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52630 Number of HSP's gapped (non-prelim): 131 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)