ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet21c02 |
|---|---|
| Clone Library Name | barley_pub |
>BSPB_POPDE (Q09117) Bark storage protein B precursor| Length = 312 Score = 51.6 bits (122), Expect = 8e-07 Identities = 26/78 (33%), Positives = 43/78 (55%) Frame = +1 Query: 205 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 384 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMAT 88 Query: 385 TTQMLLSLFRVKGIVHWG 438 T Q+LL+ F + G++++G Sbjct: 89 TLQILLARFSIHGVIYFG 106
>BSPA_POPDE (Q07469) Bark storage protein A precursor| Length = 312 Score = 50.8 bits (120), Expect = 1e-06 Identities = 26/78 (33%), Positives = 42/78 (53%) Frame = +1 Query: 205 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 384 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMAT 88 Query: 385 TTQMLLSLFRVKGIVHWG 438 T Q+LL F + G++++G Sbjct: 89 TLQILLVRFNIHGVIYFG 106
>Y2293_MYCTU (Q50673) Hypothetical protein Rv2293c/MT2350 precursor| Length = 246 Score = 34.7 bits (78), Expect = 0.11 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = +1 Query: 304 RRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLF 411 RR+ G+I G+ V++ MTG+ ++NA TT+ + F Sbjct: 69 RRYYLGSISGKKVIVAMTGIGLVNATNTTETAFARF 104
>ASSY_STRMU (Q8CWZ0) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 396 Score = 33.9 bits (76), Expect = 0.18 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Frame = -1 Query: 414 PEQAQQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAG-HEA 259 PE+A G SVE A ++ D +A DG + K + L + + LAG H Sbjct: 196 PEEA---FGITNSVEEAPDKAEYVDITFKEGKPVALDGQEMKLADL-IQKLNVLAGKHGV 251 Query: 258 GRLEH-RNHLVGVGHDEADERPGAV 187 GR++H N LVG+ E E PGAV Sbjct: 252 GRIDHVENRLVGIKSREIYECPGAV 276
>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining| factor) Length = 311 Score = 33.1 bits (74), Expect = 0.31 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 270 QQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWSDHP 392 QQ+ H H + + L NH +++ HD + Q++ DHP Sbjct: 200 QQQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHP 240
>ASSY_BACLD (Q65G67) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.6 bits (70), Expect = 0.89 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -1 Query: 336 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 187 ++ DG+ S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGTHYPLSDLILKLNELAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>CDC54_YEAST (P30665) Cell division control protein 54| Length = 933 Score = 31.6 bits (70), Expect = 0.89 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +1 Query: 214 VVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQ 393 VVPN + P L SP+ S S DI GR +G+ + G S LN ++Q Sbjct: 19 VVPNPDSVPPQLSSPALFYSSSSSQGDIYGRNNSQNLSQGEGNIRAAIGSSPLNFPSSSQ 78
>ASSY_BACSU (O34347) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 336 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 187 ++ DG S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGVSYSLSELILKLNEMAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>HUTI_PSESM (Q87UL9) Imidazolonepropionase (EC 3.5.2.7)| (Imidazolone-5-propionate hydrolase) Length = 401 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/67 (25%), Positives = 27/67 (40%) Frame = -1 Query: 351 DHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADG 172 +HD+ + G+ P +D H G+ +G E R L GV + E G + Sbjct: 46 EHDNCIDLGGAWVTPGLIDCHTHTVFGGNRSGEFEQR--LQGVSYAEIAAAGGGIASTVR 103 Query: 171 CPRLLSD 151 R S+ Sbjct: 104 ATRAASE 110
>MAP2_MOUSE (P20357) Microtubule-associated protein 2 (MAP 2)| Length = 1828 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 414 PEQAQQHLGGQTSVEHAQSCHDHDDALAFDGSKAKPSPLDVHVRD 280 PE+ ++ L V + D L F +KA+PS LD+ V D Sbjct: 1014 PEKTEKGLSSVPEVAEVEPTTKADQGLDFAATKAEPSQLDIKVSD 1058
>MK15_RAT (Q9Z2A6) Mitogen-activated protein kinase 15 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 7) Length = 547 Score = 30.4 bits (67), Expect = 2.0 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +3 Query: 330 RPKRRHGHDRTEHAQ--RWSDHPDAAEPVPGEGHRPLG 437 +P+ HGHD EH + R S P P PG G RP G Sbjct: 396 KPQNGHGHD-PEHVEVRRQSSDPLYQLPPPGSGERPPG 432
>ASSY_GEOKA (Q5KW94) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 30.4 bits (67), Expect = 2.0 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -1 Query: 318 KAKPSPLDVHVRDALAG-HEAGRLEH-RNHLVGVGHDEADERPGAV 187 KA P + +ALAG H GR++H N LVG+ E E PGA+ Sbjct: 232 KAYPLAQLILELNALAGKHGVGRIDHVENRLVGIKSREVYECPGAI 277
>NORR2_RALEU (Q9K4U8) Nitric oxide reductase transcription regulator norR2| Length = 521 Score = 29.6 bits (65), Expect = 3.4 Identities = 20/58 (34%), Positives = 23/58 (39%) Frame = -1 Query: 321 SKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADGCPRLLSDV 148 S+ + PL VHV A E H G ERPG ADG P L +V Sbjct: 238 SRRRAQPL-VHVNCAALPESLAESELFGHARGAFSGATGERPGRFEAADGQPLFLDEV 294
>ASSY_STRT2 (Q5M2K2) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 3.4 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 336 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 187 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>ASSY_STRT1 (Q5LXZ8) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 3.4 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 336 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 187 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>GCH1_CAEEL (Q19980) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)| Length = 223 Score = 29.6 bits (65), Expect = 3.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 325 IEGQSVVMVMTGLSMLNAGLTTQMLLSLFR 414 IE + MVM G+ +NA TT +L +FR Sbjct: 178 IEASHMCMVMRGVQKINASTTTSCMLGVFR 207
>ASSY_STRR6 (Q8DRI5) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 398 Score = 29.6 bits (65), Expect = 3.4 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%) Frame = -1 Query: 414 PEQAQQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAGHEAG 256 PE+A G TS E A ++ + ++ +G K + L + + H G Sbjct: 196 PEEA---FGITTSPEQAPDMPEYIEIEFSEGVPVSLNGEVLKLADLIQKLNEIAGKHGVG 252 Query: 255 RLEH-RNHLVGVGHDEADERPGAV 187 R++H N LVG+ E E PGAV Sbjct: 253 RIDHVENRLVGIKSREIYECPGAV 276
>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor| Length = 402 Score = 29.3 bits (64), Expect = 4.4 Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Frame = +3 Query: 255 AQLRGQQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWS----DHPDAAEPVPGEG 422 A R HP H HP H P HGH E+A D PD E P G Sbjct: 200 ASQRHHHPHP-HSHPHPHPHPHPHPHPHPHHGHQLHENAHLSESPKPDTPDTPENPPTSG 258
>ZN358_HUMAN (Q9NW07) Zinc finger protein 358| Length = 481 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -1 Query: 324 GSKAKPSPLDVHVRDALAGHEAG 256 GS++ PSP V D AGH+AG Sbjct: 394 GSRSTPSPTPVESSDPKAGHDAG 416
>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)| (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1) Length = 2688 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 173 PSAGRTAPGRSSASSCPTPT 232 PSAG PGRS A + P PT Sbjct: 2618 PSAGHVLPGRSPAQAQPAPT 2637
>MAAY3_SCHCO (P37934) Mating-type protein A-alpha Y3| Length = 926 Score = 28.5 bits (62), Expect = 7.6 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -2 Query: 383 RPALSMLSPVMTMTTLWPSMVPK-RNLRP-WMSMLGMLLLATKLGDSSTGTIS*VLGTTR 210 +PA S S T + + ++P+ N P W +++GM T GT S LG T Sbjct: 830 QPAASFDSSSETSSMDFNWLLPQCANTAPDWSALIGMTPSTTSQIHVLGGTYSCELGGTN 889 Query: 209 PTNGPARFA 183 TN P FA Sbjct: 890 TTNAPLNFA 898
>LON_BRUSU (Q8G0I7) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 307 RFRFGTIEGQSVVMVMTGLSMLNAG 381 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUME (Q8YHC6) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 307 RFRFGTIEGQSVVMVMTGLSMLNAG 381 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUAB (P0C113) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 307 RFRFGTIEGQSVVMVMTGLSMLNAG 381 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUA2 (Q2YPX3) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 307 RFRFGTIEGQSVVMVMTGLSMLNAG 381 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>GCP_HALMA (P36174) Putative O-sialoglycoprotein endopeptidase (EC 3.4.24.57)| (Glycoprotease) Length = 548 Score = 28.5 bits (62), Expect = 7.6 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 9/104 (8%) Frame = -1 Query: 438 APVDDALHPEQAQQHLGG------QTSVE--HAQSCHDHDDALAFDG-SKAKPSPLDVHV 286 AP +HP +A +H+G +T++E H ++ D DD+ D + A+ L + Sbjct: 40 APDSGGIHPREAAEHMGEAIPTVVETAIEHTHGRAGRDGDDSAPIDAVAFARGPGLGPCL 99 Query: 285 RDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADGCPRLLS 154 R A LVGV H A G R P L+ Sbjct: 100 RIVATAARAVAQRFDVPLVGVNHMVAHLEVGRHRSGFDSPVCLN 143
>RS5_CAMJR (Q5HSA7) 30S ribosomal protein S5| Length = 147 Score = 26.2 bits (56), Expect(2) = 8.5 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -1 Query: 246 HRNHLVGVGHDEADERPGAVRPA 178 +R LVGVG+ +A E P A+R A Sbjct: 39 NRKGLVGVGYGKAKEVPDAIRKA 61 Score = 20.8 bits (42), Expect(2) = 8.5 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -2 Query: 170 AHVF*VMYPSAAVAISVTATRTTAMSCCRTPPMVELAPFLDM 45 AH V Y ++ + + + T ++ T P+VELA D+ Sbjct: 80 AHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDI 121
>RS5_CAMJE (Q9PLY8) 30S ribosomal protein S5| Length = 147 Score = 26.2 bits (56), Expect(2) = 8.5 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -1 Query: 246 HRNHLVGVGHDEADERPGAVRPA 178 +R LVGVG+ +A E P A+R A Sbjct: 39 NRKGLVGVGYGKAKEVPDAIRKA 61 Score = 20.8 bits (42), Expect(2) = 8.5 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -2 Query: 170 AHVF*VMYPSAAVAISVTATRTTAMSCCRTPPMVELAPFLDM 45 AH V Y ++ + + + T ++ T P+VELA D+ Sbjct: 80 AHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDI 121
>MK15_MOUSE (Q80Y86) Mitogen-activated protein kinase 15 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 7) Length = 549 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = +3 Query: 330 RPKRRHGHDRTEHAQ--RWSDHPDAAEPVPGEGHRPLG 437 +P R GHD EH + R S P P PG G RP G Sbjct: 398 KPPRSPGHD-PEHVEVRRQSSDPLFQLPPPGRGERPPG 434
>KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 476 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Frame = +3 Query: 288 HGHPRAKVSLWNHRRPKRRHGHDRTE-HAQRWSDHPDAAEPVPGEGH 425 HGH S+W+ HGH R E H H + G GH Sbjct: 69 HGHGHTHESIWHGHAHSHDHGHSREELHHGHSHGHSHDSLHHGGHGH 115
>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining| factor) Length = 355 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +3 Query: 270 QQEHP*HGHPRAKVSLWNHRRPKRRHG-HDRTEHAQRWSDHPDAAEPVPGEGH 425 QQ+ H H + K +H + +++ HD + Q++ DHP + H Sbjct: 230 QQQQQFHDHHQQKQQFHDHHQQQQQQQFHDHPQQQQQFHDHPQQKQQFHDHHH 282
>NCKX_DROME (Q9U6A0) Sodium/potassium/calcium exchanger| (Na(+)/K(+)/Ca(2+)-exchange protein) Length = 856 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -1 Query: 426 DALHPEQAQQHLGGQTSVEHAQSCHDHDDALAFDGSKAKPSPLD 295 DA P A+QH GG S Q+ +H+D L G+ ++ S D Sbjct: 214 DAAKPRPAKQHFGGSNSNSPNQN-QNHNDVLGGVGAPSQTSGED 256 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,166,149 Number of Sequences: 219361 Number of extensions: 1149937 Number of successful extensions: 3907 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3777 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3898 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
