ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet20f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
2gb|BT017837.1| Zea mays clone EL01N0509G01.c mRNA sequence 121 2e-24
3ref|XM_472780.1| Oryza sativa (japonica cultivar-group), predic... 111 2e-21
4emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4,... 111 2e-21
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
6emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 92 2e-15
7gb|AY389684.1| Hyacinthus orientalis Fas-associated factor 1 mRN... 64 4e-07
8gb|BT013918.1| Lycopersicon esculentum clone 132915F, mRNA sequence 64 4e-07
9gb|AY572783.1| Arabidopsis thaliana CDC48-interacting UBX-domain... 58 3e-05
10ref|NM_118336.2| Arabidopsis thaliana pux3 (LANT UBX DOMAIN-CONT... 52 0.002
11gb|BT010440.1| Arabidopsis thaliana At4g22150 mRNA, complete cds 52 0.002
12dbj|AK176241.1| Arabidopsis thaliana mRNA for putative protein, ... 52 0.002
13gb|AC155729.3| Mus musculus 6 BAC RP24-173B18 (Roswell Park Canc... 46 0.097
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.38
15gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.38
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
17gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.38
18gb|AY566230.2| Xenopus laevis ninein-like protein (Nlp) mRNA, co... 44 0.38
19ref|XM_527699.1| PREDICTED: Pan troglodytes similar to Hoxa-9 (L... 42 1.5
20gb|AY542967.1| Bigelowiella natans translation initiation factor... 42 1.5
21gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 1.5
22gb|AC146102.2| Pan troglodytes BAC clone RP43-21L13 from 7, comp... 42 1.5
23gb|AC096792.12| Rattus norvegicus 7 BAC CH230-8O15 (Children's H... 42 1.5
24gb|BT023769.1| Drosophila melanogaster LP04777 full insert cDNA 42 1.5
25ref|NM_135083.2| Drosophila melanogaster CG6634-RA (nmr2), mRNA 42 1.5
26gb|AC116608.1| Papio hamadryas chromosome , clone RP41-155I24, c... 42 1.5
27gb|AC004080.2| Homo sapiens PAC clone RP1-170O19 from 7p15-p21, ... 42 1.5
28gb|AC161061.2| Pan troglodytes BAC clone CH251-489A6 from chromo... 42 1.5
29gb|AC011063.8|AC011063 Drosophila melanogaster, chromosome 2L, r... 42 1.5
30dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.5
31gb|AE003610.3| Drosophila melanogaster chromosome 2L, section 19... 42 1.5
32ref|NM_114784.2| Arabidopsis thaliana unknown protein AT3G49250 ... 40 6.0
33gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.0
34ref|XM_362883.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.0
35gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein ... 40 6.0
36gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.0
37gb|AC147978.3| Pan troglodytes BAC clone CH251-94E4 from 7, comp... 40 6.0
38gb|AC147977.2| Pan troglodytes BAC clone CH251-486H24 from 7, co... 40 6.0
39gb|AC145999.3| Pan troglodytes BAC clone RP43-138L12 from 7, com... 40 6.0
40gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 6.0
41ref|XM_843547.1| PREDICTED: Canis familiaris similar to plakophi... 40 6.0
42ref|XM_851528.1| PREDICTED: Canis familiaris similar to plakophi... 40 6.0
43emb|AL158051.10| Human DNA sequence from clone RP1-160B9 on chro... 40 6.0
44gb|AE008758.1| Salmonella typhimurium LT2, section 62 of 220 of ... 40 6.0
45emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.0
46emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 6.0
47emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, ... 40 6.0
48emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, ... 40 6.0
49emb|AL132956.2|ATF2K15 Arabidopsis thaliana DNA chromosome 3, BA... 40 6.0
50emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, B... 40 6.0
51gb|AC090150.9| Homo sapiens chromosome 8, clone RP11-521M14, com... 40 6.0
52gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 6.0
53gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map... 40 6.0
54gb|AY090286.1| Arabidopsis thaliana AT3g49250/F2K15_110 mRNA, co... 40 6.0
55ref|NM_001024310.1| Rattus norvegicus similar to ADP-ribosylatio... 40 6.0
56gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.0
57gb|AY049288.1| Arabidopsis thaliana AT3g49250/F2K15_110 mRNA, co... 40 6.0
58gb|BC079329.1| Rattus norvegicus similar to ADP-ribosylation-lik... 40 6.0
59gb|DQ350729.1| Ajellomyces capsulatus nitrosative stress induced... 40 6.0
60emb|BX824613.1|CNS0A6Y8 Arabidopsis thaliana Full-length cDNA Co... 40 6.0
61gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 40 6.0
62gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 6.0
63gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 6.0
64gb|AC004857.1|AC004857 Homo sapiens PAC clone RP4-685A2 from 7p2... 40 6.0
65gb|AF198618.1|AF198618 Streptomyces viridosporus xylanase (svxA)... 40 6.0
66gb|AF149414.1|T19J18 Arabidopsis thaliana BAC T19J18 40 6.0
67gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 6.0
68gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.0 
>dbj|AK069067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008O13, full
           insert sequence
          Length = 1352

 Score =  176 bits (89), Expect = 4e-41
 Identities = 166/191 (86%), Gaps = 3/191 (1%)
 Strand = Plus / Plus

                                                                       
Query: 150 catccgcaccctggccgacatcaaccgcgccccctccggattcccagg---cgcaggcgg 206
           |||||||||||| || ||||||| ||||  ||| ||||| ||||| ||   ||  |||||
Sbjct: 169 catccgcaccctcgcggacatcagccgctgcccgtccggcttccctgggggcggcggcgg 228

                                                                       
Query: 207 cagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagagtgggat 266
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cggcggcagcgactccgacgagccccaggagtactacaccggcggcgagaagagtgggat 288

                                                                       
Query: 267 gcttgttcaagatccaacaaggagaaataatgtggactcaatctttgagcaagctagagt 326
           ||||||||| || |||||||| ||||| | ||||||||||||||| || |||||||||  
Sbjct: 289 gcttgttcaggacccaacaagaagaaacactgtggactcaatcttcgatcaagctagaca 348

                      
Query: 327 gatgggcgctc 337
           |||||| ||||
Sbjct: 349 gatgggtgctc 359



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 acgcgacccgcgagccaaaccctacc 75
          ||||||||||||||||||||||||||
Sbjct: 29 acgcgacccgcgagccaaaccctacc 54



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  cggcgatgagctcctccaac 105
           ||||||||||||||||||||
Sbjct: 96  cggcgatgagctcctccaac 115
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>gb|BT017837.1| Zea mays clone EL01N0509G01.c mRNA sequence
          Length = 1387

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                       
Query: 202 ggcggcagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagagt 261
           |||| |||||||||||||  ||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct: 237 ggcgacagcggcagcgacgacgacgagccacaggaatactacaccggtggcgagaagagt 296

                                                    
Query: 262 gggatgcttgttcaagatccaacaaggagaaataatgtgga 302
           || ||||||||||||||||||||||| |||||| |||||||
Sbjct: 297 ggaatgcttgttcaagatccaacaagaagaaatgatgtgga 337
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>ref|XM_472780.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1026

 Score =  111 bits (56), Expect = 2e-21
 Identities = 100/114 (87%), Gaps = 3/114 (2%)
 Strand = Plus / Plus

                                                                       
Query: 150 catccgcaccctggccgacatcaaccgcgccccctccggattccc---aggcgcaggcgg 206
           |||||||||||| || ||||||| ||||| ||| ||||| |||||    ||||  |||||
Sbjct: 69  catccgcaccctcgcggacatcagccgcggcccgtccggcttccctgggggcggcggcgg 128

                                                                 
Query: 207 cagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagag 260
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 129 cggcggcagcgactccgacgagccccaggagtactacaccggcggcgagaagag 182



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                       
Query: 259 agtgggatgcttgttcaagatccaacaaggagaaataatgtggactcaatctttgagcaa 318
           ||||||||||||||||| || |||||||| ||||| | ||||||||||||||| || |||
Sbjct: 271 agtgggatgcttgttcaggacccaacaagaagaaacactgtggactcaatcttcgaacaa 330

                                                                       
Query: 319 gctagagtgatgggcgctcagcaagttccactgccttcttttgatggccagtcttccagc 378
           ||||||  |||||| ||||  |||| || || |||| | ||||| |  || |||||||| 
Sbjct: 331 gctagacagatgggtgctctccaagatcaaccgcctccatttgaggatcaatcttccagt 390

                                     
Query: 379 tcaacaagctttacaggaacaggtcg 404
           |||| |||||||||||| || |||||
Sbjct: 391 tcaagaagctttacagggactggtcg 416
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>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
             complete sequence
          Length = 139418

 Score =  111 bits (56), Expect = 2e-21
 Identities = 100/114 (87%), Gaps = 3/114 (2%)
 Strand = Plus / Plus

                                                                         
Query: 150   catccgcaccctggccgacatcaaccgcgccccctccggattccc---aggcgcaggcgg 206
             |||||||||||| || ||||||| ||||| ||| ||||| |||||    ||||  |||||
Sbjct: 50941 catccgcaccctcgcggacatcagccgcggcccgtccggcttccctgggggcggcggcgg 51000

                                                                   
Query: 207   cagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagag 260
             | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 51001 cggcggcagcgactccgacgagccccaggagtactacaccggcggcgagaagag 51054



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                         
Query: 259   agtgggatgcttgttcaagatccaacaaggagaaataatgtggactcaatctttgagcaa 318
             ||||||||||||||||| || |||||||| ||||| | ||||||||||||||| || |||
Sbjct: 53335 agtgggatgcttgttcaggacccaacaagaagaaacactgtggactcaatcttcgaacaa 53394

                                                                         
Query: 319   gctagagtgatgggcgctcagcaagttccactgccttcttttgatggccagtcttccagc 378
             ||||||  |||||| ||||  |||| || || |||| | ||||| |  || |||||||| 
Sbjct: 53395 gctagacagatgggtgctctccaagatcaaccgcctccatttgaggatcaatcttccagt 53454

                                       
Query: 379   tcaacaagctttacaggaacaggtcg 404
             |||| |||||||||||| || |||||
Sbjct: 53455 tcaagaagctttacagggactggtcg 53480



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 50    acgcgacccgcgagccaaaccctacc 75
             ||||||||||||||||||||||||||
Sbjct: 50801 acgcgacccgcgagccaaaccctacc 50826



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    cggcgatgagctcctccaac 105
             ||||||||||||||||||||
Sbjct: 50868 cggcgatgagctcctccaac 50887
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  111 bits (56), Expect = 2e-21
 Identities = 100/114 (87%), Gaps = 3/114 (2%)
 Strand = Plus / Plus

                                                                            
Query: 150      catccgcaccctggccgacatcaaccgcgccccctccggattccc---aggcgcaggcgg 206
                |||||||||||| || ||||||| ||||| ||| ||||| |||||    ||||  |||||
Sbjct: 23160749 catccgcaccctcgcggacatcagccgcggcccgtccggcttccctgggggcggcggcgg 23160808

                                                                      
Query: 207      cagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagag 260
                | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 23160809 cggcggcagcgactccgacgagccccaggagtactacaccggcggcgagaagag 23160862



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                            
Query: 259      agtgggatgcttgttcaagatccaacaaggagaaataatgtggactcaatctttgagcaa 318
                ||||||||||||||||| || |||||||| ||||| | ||||||||||||||| || |||
Sbjct: 23163143 agtgggatgcttgttcaggacccaacaagaagaaacactgtggactcaatcttcgaacaa 23163202

                                                                            
Query: 319      gctagagtgatgggcgctcagcaagttccactgccttcttttgatggccagtcttccagc 378
                ||||||  |||||| ||||  |||| || || |||| | ||||| |  || |||||||| 
Sbjct: 23163203 gctagacagatgggtgctctccaagatcaaccgcctccatttgaggatcaatcttccagt 23163262

                                          
Query: 379      tcaacaagctttacaggaacaggtcg 404
                |||| |||||||||||| || |||||
Sbjct: 23163263 tcaagaagctttacagggactggtcg 23163288



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                          
Query: 50       acgcgacccgcgagccaaaccctacc 75
                ||||||||||||||||||||||||||
Sbjct: 23160609 acgcgacccgcgagccaaaccctacc 23160634



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 86       cggcgatgagctcctccaac 105
                ||||||||||||||||||||
Sbjct: 23160676 cggcgatgagctcctccaac 23160695
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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
            complete sequence
          Length = 121337

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                        
Query: 259  agtgggatgcttgttcaagatccaacaaggagaaataatgtggactcaatctttgagcaa 318
            ||||||||||||||||| || |||||||| ||||| | ||||||||||||||| || |||
Sbjct: 1296 agtgggatgcttgttcaggacccaacaagaagaaacactgtggactcaatcttcgaacaa 1355

                                                                        
Query: 319  gctagagtgatgggcgctcagcaagttccactgccttcttttgatggccagtcttccagc 378
            ||||||  |||||| ||||  |||| || || |||| | ||||| |  || |||||||| 
Sbjct: 1356 gctagacagatgggtgctctccaagatcaaccgcctccatttgaggatcaatcttccagt 1415

                                      
Query: 379  tcaacaagctttacaggaacaggtcg 404
            |||| |||||||||||| || |||||
Sbjct: 1416 tcaagaagctttacagggactggtcg 1441
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>gb|AY389684.1| Hyacinthus orientalis Fas-associated factor 1 mRNA, partial cds
          Length = 884

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 214 agcgactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgtt 273
           ||||||||||| | ||| ||||| ||||||||||| || || || ||||| |||||||||
Sbjct: 377 agcgactccgacgggccgcaggaatactacaccgggggagaaaaaagtggaatgcttgtt 436

                   
Query: 274 caagatcc 281
           ||||||||
Sbjct: 437 caagatcc 444
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>gb|BT013918.1| Lycopersicon esculentum clone 132915F, mRNA sequence
          Length = 1394

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/108 (82%)
 Strand = Plus / Plus

                                                                       
Query: 217 gactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgttcaa 276
           |||||||||||||| || ||||| || || ||||| ||||| || || ||||||||||||
Sbjct: 411 gactccgatgagcctcaagagtattatactggcggagagaaaagcggaatgcttgttcaa 470

                                                           
Query: 277 gatccaacaaggagaaataatgtggactcaatctttgagcaagctaga 324
           |||||| | | |  |||| ||||| ||||||| || || |||||||||
Sbjct: 471 gatccatctaaggcaaatgatgtgaactcaatattcgatcaagctaga 518
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>gb|AY572783.1| Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3)
           mRNA, complete cds
          Length = 1062

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 214 agcgactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgtt 273
           |||||||||||||  || || || |||| |||||| ||||| || ||||| |||||||||
Sbjct: 103 agcgactccgatggacctcaagaatacttcaccggtggcgaaaaaagtggtatgcttgtt 162

                        
Query: 274 caagatccaacaa 286
           |||||||| ||||
Sbjct: 163 caagatcctacaa 175
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>ref|NM_118336.2| Arabidopsis thaliana pux3 (LANT UBX DOMAIN-CONTAINING PROTEIN 3)
           AT4G22150 (pux3) mRNA, complete cds
          Length = 1039

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                       
Query: 217 gactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgttcaa 276
           ||||||||||  || || || |||| |||||| ||||| || ||||| ||||||||||||
Sbjct: 106 gactccgatggacctcaagaatacttcaccggtggcgaaaaaagtggtatgcttgttcaa 165

                     
Query: 277 gatccaacaa 286
           ||||| ||||
Sbjct: 166 gatcctacaa 175
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>gb|BT010440.1| Arabidopsis thaliana At4g22150 mRNA, complete cds
          Length = 909

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                       
Query: 217 gactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgttcaa 276
           ||||||||||  || || || |||| |||||| ||||| || ||||| ||||||||||||
Sbjct: 106 gactccgatggacctcaagaatacttcaccggtggcgaaaaaagtggtatgcttgttcaa 165

                     
Query: 277 gatccaacaa 286
           ||||| ||||
Sbjct: 166 gatcctacaa 175
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>dbj|AK176241.1| Arabidopsis thaliana mRNA for putative protein, complete cds,
           clone: RAFL23-13-D09
          Length = 1047

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                       
Query: 217 gactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgttcaa 276
           ||||||||||  || || || |||| |||||| ||||| || ||||| ||||||||||||
Sbjct: 115 gactccgatggacctcaagaatacttcaccggtggcgaaaaaagtggtatgcttgttcaa 174

                     
Query: 277 gatccaacaa 286
           ||||| ||||
Sbjct: 175 gatcctacaa 184
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>gb|AC155729.3| Mus musculus 6 BAC RP24-173B18 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 198782

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 195   aggcgcaggcggcagcggcagcg 217
             |||||||||||||||||||||||
Sbjct: 92961 aggcgcaggcggcagcggcagcg 92983
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 203     gcggcagcggcagcgactccga 224
               ||||||||||||||||||||||
Sbjct: 5565673 gcggcagcggcagcgactccga 5565652
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>gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0040M05, from chromosome 3, complete sequence
          Length = 153126

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 203    gcggcagcggcagcgactccga 224
              ||||||||||||||||||||||
Sbjct: 109205 gcggcagcggcagcgactccga 109184
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 203     gcggcagcggcagcgactccga 224
               ||||||||||||||||||||||
Sbjct: 5564888 gcggcagcggcagcgactccga 5564867
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>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0014O06, complete sequence
          Length = 168031

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 203   gcggcagcggcagcgactccga 224
             ||||||||||||||||||||||
Sbjct: 29372 gcggcagcggcagcgactccga 29351
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>gb|AY566230.2| Xenopus laevis ninein-like protein (Nlp) mRNA, complete cds
          Length = 7192

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 368  agtcttccagctcaacaagctt 389
            ||||||||||||||||||||||
Sbjct: 3787 agtcttccagctcaacaagctt 3766
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>ref|XM_527699.1| PREDICTED: Pan troglodytes similar to Hoxa-9 (LOC472324), mRNA
          Length = 738

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 ggattcccaggcgcaggcggc 207
           |||||||||||||||||||||
Sbjct: 194 ggattcccaggcgcaggcggc 174
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>gb|AY542967.1| Bigelowiella natans translation initiation factor 6 (eIF6) mRNA,
           complete cds
          Length = 1083

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 81  cacgtcggcgatgagctcctc 101
           |||||||||||||||||||||
Sbjct: 524 cacgtcggcgatgagctcctc 504
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 197     gcgcaggcggcagcggcagcg 217
               |||||||||||||||||||||
Sbjct: 4980330 gcgcaggcggcagcggcagcg 4980350
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>gb|AC146102.2| Pan troglodytes BAC clone RP43-21L13 from 7, complete sequence
          Length = 191971

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    ggattcccaggcgcaggcggc 207
              |||||||||||||||||||||
Sbjct: 170346 ggattcccaggcgcaggcggc 170366
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>gb|AC096792.12| Rattus norvegicus 7 BAC CH230-8O15 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 205454

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 322    agagtgatgggcgctcagcaagttc 346
              ||||||||||||||||||| |||||
Sbjct: 152280 agagtgatgggcgctcagctagttc 152304
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>gb|BT023769.1| Drosophila melanogaster LP04777 full insert cDNA
          Length = 2145

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 194  caggcgcaggcggcagcggcagcga 218
            ||||||||||||||||| |||||||
Sbjct: 1784 caggcgcaggcggcagccgcagcga 1808
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>ref|NM_135083.2| Drosophila melanogaster CG6634-RA (nmr2), mRNA
          Length = 2917

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 194  caggcgcaggcggcagcggcagcga 218
            ||||||||||||||||| |||||||
Sbjct: 1796 caggcgcaggcggcagccgcagcga 1820
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>gb|AC116608.1| Papio hamadryas chromosome , clone RP41-155I24, complete sequence
          Length = 161654

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   ggattcccaggcgcaggcggc 207
             |||||||||||||||||||||
Sbjct: 96036 ggattcccaggcgcaggcggc 96016
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>gb|AC004080.2| Homo sapiens PAC clone RP1-170O19 from 7p15-p21, complete sequence
          Length = 129355

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   ggattcccaggcgcaggcggc 207
             |||||||||||||||||||||
Sbjct: 39899 ggattcccaggcgcaggcggc 39919
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>gb|AC161061.2| Pan troglodytes BAC clone CH251-489A6 from chromosome 7, complete
              sequence
          Length = 177652

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    ggattcccaggcgcaggcggc 207
              |||||||||||||||||||||
Sbjct: 102395 ggattcccaggcgcaggcggc 102415
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>gb|AC011063.8|AC011063 Drosophila melanogaster, chromosome 2L, region 25D-25D, BAC clone
             BACR44J04, complete sequence
          Length = 164884

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 194   caggcgcaggcggcagcggcagcga 218
             ||||||||||||||||| |||||||
Sbjct: 77300 caggcgcaggcggcagccgcagcga 77324
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 199     gcaggcggcagcggcagcgactccg 223
               ||||||||||||||||||| |||||
Sbjct: 2242699 gcaggcggcagcggcagcggctccg 2242723
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>gb|AE003610.3| Drosophila melanogaster chromosome 2L, section 19 of 83 of the complete
             sequence
          Length = 260249

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 194   caggcgcaggcggcagcggcagcga 218
             ||||||||||||||||| |||||||
Sbjct: 31010 caggcgcaggcggcagccgcagcga 31034
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>ref|NM_114784.2| Arabidopsis thaliana unknown protein AT3G49250 mRNA, complete cds
          Length = 1810

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 tgttcaagatccaacaagga 289
           ||||||||||||||||||||
Sbjct: 243 tgttcaagatccaacaagga 262
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 77      cgaacacgtcggcgatgagc 96
               ||||||||||||||||||||
Sbjct: 2131879 cgaacacgtcggcgatgagc 2131898
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>ref|XM_362883.1| Magnaporthe grisea 70-15 hypothetical protein (MG08554.4) partial
           cds
          Length = 1692

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 cgcaggcggcagcggcagcg 217
           ||||||||||||||||||||
Sbjct: 27  cgcaggcggcagcggcagcg 46
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>gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein gene, exons 1 through 64
              and complete cds
          Length = 153745

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    cagcaagttccactgccttc 356
              ||||||||||||||||||||
Sbjct: 106454 cagcaagttccactgccttc 106435
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 77      cgaacacgtcggcgatgagc 96
               ||||||||||||||||||||
Sbjct: 3516460 cgaacacgtcggcgatgagc 3516479
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>gb|AC147978.3| Pan troglodytes BAC clone CH251-94E4 from 7, complete sequence
          Length = 206433

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   tcttccagctcaacaagctt 389
             ||||||||||||||||||||
Sbjct: 26777 tcttccagctcaacaagctt 26796
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>gb|AC147977.2| Pan troglodytes BAC clone CH251-486H24 from 7, complete sequence
          Length = 213806

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   tcttccagctcaacaagctt 389
             ||||||||||||||||||||
Sbjct: 30668 tcttccagctcaacaagctt 30649
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>gb|AC145999.3| Pan troglodytes BAC clone RP43-138L12 from 7, complete sequence
          Length = 182926

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    tcttccagctcaacaagctt 389
              ||||||||||||||||||||
Sbjct: 121412 tcttccagctcaacaagctt 121431
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 158    ccctggccgacatcaaccgcgccc 181
              |||||||||| |||||||||||||
Sbjct: 940972 ccctggccgagatcaaccgcgccc 940995
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>ref|XM_843547.1| PREDICTED: Canis familiaris similar to plakophilin 1 isoform 1a,
            transcript variant 2 (LOC607140), mRNA
          Length = 2280

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   cgtcggcgatgagctcctcc 102
            ||||||||||||||||||||
Sbjct: 1114 cgtcggcgatgagctcctcc 1095
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>ref|XM_851528.1| PREDICTED: Canis familiaris similar to plakophilin 1 isoform 1a,
            transcript variant 3 (LOC607140), mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   cgtcggcgatgagctcctcc 102
            ||||||||||||||||||||
Sbjct: 1114 cgtcggcgatgagctcctcc 1095
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>emb|AL158051.10| Human DNA sequence from clone RP1-160B9 on chromosome 6q12-13 Contains
             part of the BAI3 gene for brain-specific angiogenesis
             inhibitor 3, complete sequence
          Length = 69522

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   ttccactgccttcttttgat 363
             ||||||||||||||||||||
Sbjct: 55567 ttccactgccttcttttgat 55586
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>gb|AE008758.1| Salmonella typhimurium LT2, section 62 of 220 of the complete
           genome
          Length = 22470

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 380 caacaagctttacaggaaca 399
           ||||||||||||||||||||
Sbjct: 578 caacaagctttacaggaaca 597
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 77      cgaacacgtcggcgatgagc 96
               ||||||||||||||||||||
Sbjct: 3257687 cgaacacgtcggcgatgagc 3257706
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>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 7/20
          Length = 233050

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    caacaagctttacaggaaca 399
              ||||||||||||||||||||
Sbjct: 129670 caacaagctttacaggaaca 129651
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>emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 56
          Length = 196247

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 259    agtgggatgcttgttcaagatccaacaa 286
              ||||| ||||||||||||||||| ||||
Sbjct: 160168 agtggtatgcttgttcaagatcctacaa 160141
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>emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13
          Length = 200001

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   cgcaggcggcagcggcagcg 217
             ||||||||||||||||||||
Sbjct: 76590 cgcaggcggcagcggcagcg 76571
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>emb|AL132956.2|ATF2K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F2K15
          Length = 129757

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   tgttcaagatccaacaagga 289
             ||||||||||||||||||||
Sbjct: 63106 tgttcaagatccaacaagga 63087
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>emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA
            project)
          Length = 82891

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 259  agtgggatgcttgttcaagatccaacaa 286
            ||||| ||||||||||||||||| ||||
Sbjct: 2826 agtggtatgcttgttcaagatcctacaa 2799
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>gb|AC090150.9| Homo sapiens chromosome 8, clone RP11-521M14, complete sequence
          Length = 210629

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     aaccaaccccagcaaaagta 22
             ||||||||||||||||||||
Sbjct: 55114 aaccaaccccagcaaaagta 55133
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    catccgcaccctggccgaca 169
              ||||||||||||||||||||
Sbjct: 848260 catccgcaccctggccgaca 848241
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>gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map B68, complete sequence
          Length = 115851

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    cgcaggcggcagcggcagcg 217
              ||||||||||||||||||||
Sbjct: 114696 cgcaggcggcagcggcagcg 114677
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>gb|AY090286.1| Arabidopsis thaliana AT3g49250/F2K15_110 mRNA, complete cds
          Length = 1263

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 tgttcaagatccaacaagga 289
           ||||||||||||||||||||
Sbjct: 48  tgttcaagatccaacaagga 67
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>ref|NM_001024310.1| Rattus norvegicus similar to ADP-ribosylation-like factor
           6-interacting protein 6 (LOC499798), mRNA
          Length = 1745

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 25  ccgcgacttgcgagcagagt 44
           ||||||||||||||||||||
Sbjct: 151 ccgcgacttgcgagcagagt 170
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 141     gcgcgggggcatccgcaccctggccgac 168
               ||||||||||||| || |||||||||||
Sbjct: 4163947 gcgcgggggcatcggcgccctggccgac 4163974
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>gb|AY049288.1| Arabidopsis thaliana AT3g49250/F2K15_110 mRNA, complete cds
          Length = 1758

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 tgttcaagatccaacaagga 289
           ||||||||||||||||||||
Sbjct: 191 tgttcaagatccaacaagga 210
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>gb|BC079329.1| Rattus norvegicus similar to ADP-ribosylation-like factor
           6-interacting protein 6, mRNA (cDNA clone MGC:94747
           IMAGE:7096035), complete cds
          Length = 1745

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 25  ccgcgacttgcgagcagagt 44
           ||||||||||||||||||||
Sbjct: 151 ccgcgacttgcgagcagagt 170
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>gb|DQ350729.1| Ajellomyces capsulatus nitrosative stress induced transcription 75
           (NIT75) gene, partial sequence
          Length = 1413

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 gatgcttgttcaagatccaa 283
           ||||||||||||||||||||
Sbjct: 804 gatgcttgttcaagatccaa 785
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>emb|BX824613.1|CNS0A6Y8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH5ZD11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1724

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 tgttcaagatccaacaagga 289
           ||||||||||||||||||||
Sbjct: 244 tgttcaagatccaacaagga 263
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>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 282     aacaaggagaaataatgtgg 301
               ||||||||||||||||||||
Sbjct: 1046492 aacaaggagaaataatgtgg 1046473
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   tggccgacatcaaccgcgcc 180
             ||||||||||||||||||||
Sbjct: 66863 tggccgacatcaaccgcgcc 66882
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 380     caacaagctttacaggaaca 399
               ||||||||||||||||||||
Sbjct: 1588823 caacaagctttacaggaaca 1588804
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>gb|AC004857.1|AC004857 Homo sapiens PAC clone RP4-685A2 from 7p21-p22, complete sequence
          Length = 109359

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   tcttccagctcaacaagctt 389
             ||||||||||||||||||||
Sbjct: 86877 tcttccagctcaacaagctt 86858
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>gb|AF198618.1|AF198618 Streptomyces viridosporus xylanase (svxA) gene, complete cds
          Length = 1074

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 ccgatgagccccaggagtac 240
           ||||||||||||||||||||
Sbjct: 133 ccgatgagccccaggagtac 152
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>gb|AF149414.1|T19J18 Arabidopsis thaliana BAC T19J18
          Length = 43175

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  cgcaggcggcagcggcagcg 217
            ||||||||||||||||||||
Sbjct: 6287 cgcaggcggcagcggcagcg 6268
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 380     caacaagctttacaggaaca 399
               ||||||||||||||||||||
Sbjct: 1278460 caacaagctttacaggaaca 1278479
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 77      cgaacacgtcggcgatgagc 96
               ||||||||||||||||||||
Sbjct: 1594982 cgaacacgtcggcgatgagc 1594963


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,147,169
Number of Sequences: 3902068
Number of extensions: 3147169
Number of successful extensions: 69252
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68387
Number of HSP's gapped (non-prelim): 861
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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