ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet20c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome... 182 5e-43
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 182 5e-43
3gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome... 182 5e-43
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 182 5e-43
5ref|XM_470182.1| Oryza sativa (japonica cultivar-group), predic... 176 3e-41
6dbj|AK099900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 5e-37
7gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 48 0.019
8dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 48 0.019
9ref|XM_466169.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.30
10ref|XM_506821.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.30
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
12dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.30
13dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.30
14dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
15dbj|AK099161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
16dbj|AK067736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
17ref|NM_189671.1| Oryza sativa (japonica cultivar-group), predic... 42 1.2
18gb|AY459339.1| Oryza sativa (japonica cultivar-group) clone CL00... 42 1.2
19gb|AF474135.1| Oryza sativa typical P-type R2R3 Myb protein gene... 42 1.2
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
22dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
23dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
24dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
25dbj|AK109125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
26dbj|AK102408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
27gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.2
28gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complet... 42 1.2
29ref|NM_184416.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.6
30ref|XM_472337.1| Oryza sativa (japonica cultivar-group), predic... 40 4.6
31gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 4.6
32emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 40 4.6
33gb|AF330146.1|AF330146 Gallus gallus integrin alpha 3A subunit c... 40 4.6
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
36gb|AC011443.6|AC011443 Homo sapiens chromosome 19 clone CTC-218B... 40 4.6
37gb|AC013733.10| Homo sapiens BAC clone RP11-553I15 from 2, compl... 40 4.6
38gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 40 4.6
39ref|NM_204146.1| Gallus gallus integrin, alpha 3 (antigen CD49C,... 40 4.6
40gb|AC073977.6| Homo sapiens BAC clone RP11-253H16 from 2, comple... 40 4.6
41dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
42dbj|AK071618.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
43gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.6
44gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
45emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4,... 40 4.6
46emb|AL831812.5|CNS08CAP Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.6
47emb|AL713948.4|CNS07YPR Oryza sativa chromosome 12, . BAC OJ1008... 40 4.6 
>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
             complete sequence
          Length = 138054

 Score =  182 bits (92), Expect = 5e-43
 Identities = 251/301 (83%), Gaps = 11/301 (3%)
 Strand = Plus / Minus

                                                                         
Query: 50    ccaatggaggccgtcctgcgacatccatccctttcgcgcctcaaagccccgaacccagct 109
             ||||||||||| ||||| ||||| ||||||||||| ||||||||| |||| |||||   |
Sbjct: 24163 ccaatggaggctgtcctacgacacccatccctttcccgcctcaaaccccccaaccccaat 24104

                                                                         
Query: 110   gctcacagaac-ccagtacctctccagcaccgtcccttgccgtcctcgcgtccccaagcg 168
             ||||| ||||| ||||  |||||||| ||||||||||| ||| | |||  ||||||| ||
Sbjct: 24103 gctcagagaactccagc-cctctccatcaccgtccctttccggcttcgtctccccaaccg 24045

                                                                         
Query: 169   ccgcctcgccgccgctgcgctgttccaggaccagaccaacccaagaaccgcggcagcaag 228
              || ||| ||||||| ||| ||||||||||||||||||||||||||| |    |||| ||
Sbjct: 24044 gcggctcaccgccgcggcggtgttccaggaccagaccaacccaagaaac---ccagcgag 23988

                                                                         
Query: 229   caaggggggcgatgaagaagacgaggaggggtacggagaggtggaccgcatcgtctccag 288
             |||||| |||      || ||||| |||| |||||| ||||||||||| || || |||||
Sbjct: 23987 caagggaggc------gacgacgatgaggcgtacggcgaggtggaccgtattgtgtccag 23934

                                                                         
Query: 289   ccggaccgtcaagaacgcggtgttcgcggaggacggctcggccaccaccgtcaccgccac 348
             ||| ||| |||||||  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 23933 ccgcaccatcaagaatccggtgttcgcggaggacggctcggccaccacggtcaccgccac 23874

              
Query: 349   g 349
             |
Sbjct: 23873 g 23873
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  182 bits (92), Expect = 5e-43
 Identities = 251/301 (83%), Gaps = 11/301 (3%)
 Strand = Plus / Minus

                                                                           
Query: 50      ccaatggaggccgtcctgcgacatccatccctttcgcgcctcaaagccccgaacccagct 109
               ||||||||||| ||||| ||||| ||||||||||| ||||||||| |||| |||||   |
Sbjct: 1798524 ccaatggaggctgtcctacgacacccatccctttcccgcctcaaaccccccaaccccaat 1798465

                                                                           
Query: 110     gctcacagaac-ccagtacctctccagcaccgtcccttgccgtcctcgcgtccccaagcg 168
               ||||| ||||| ||||  |||||||| ||||||||||| ||| | |||  ||||||| ||
Sbjct: 1798464 gctcagagaactccagc-cctctccatcaccgtccctttccggcttcgtctccccaaccg 1798406

                                                                           
Query: 169     ccgcctcgccgccgctgcgctgttccaggaccagaccaacccaagaaccgcggcagcaag 228
                || ||| ||||||| ||| ||||||||||||||||||||||||||| |    |||| ||
Sbjct: 1798405 gcggctcaccgccgcggcggtgttccaggaccagaccaacccaagaaac---ccagcgag 1798349

                                                                           
Query: 229     caaggggggcgatgaagaagacgaggaggggtacggagaggtggaccgcatcgtctccag 288
               |||||| |||      || ||||| |||| |||||| ||||||||||| || || |||||
Sbjct: 1798348 caagggaggc------gacgacgatgaggcgtacggcgaggtggaccgtattgtgtccag 1798295

                                                                           
Query: 289     ccggaccgtcaagaacgcggtgttcgcggaggacggctcggccaccaccgtcaccgccac 348
               ||| ||| |||||||  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1798294 ccgcaccatcaagaatccggtgttcgcggaggacggctcggccaccacggtcaccgccac 1798235

                
Query: 349     g 349
               |
Sbjct: 1798234 g 1798234



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 168      gccgcctcgccgccgctgcg 187
                ||||||||||||||||||||
Sbjct: 33942211 gccgcctcgccgccgctgcg 33942230
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>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08,
             complete sequence
          Length = 133090

 Score =  182 bits (92), Expect = 5e-43
 Identities = 251/301 (83%), Gaps = 11/301 (3%)
 Strand = Plus / Plus

                                                                         
Query: 50    ccaatggaggccgtcctgcgacatccatccctttcgcgcctcaaagccccgaacccagct 109
             ||||||||||| ||||| ||||| ||||||||||| ||||||||| |||| |||||   |
Sbjct: 35838 ccaatggaggctgtcctacgacacccatccctttcccgcctcaaaccccccaaccccaat 35897

                                                                         
Query: 110   gctcacagaac-ccagtacctctccagcaccgtcccttgccgtcctcgcgtccccaagcg 168
             ||||| ||||| ||||  |||||||| ||||||||||| ||| | |||  ||||||| ||
Sbjct: 35898 gctcagagaactccagc-cctctccatcaccgtccctttccggcttcgtctccccaaccg 35956

                                                                         
Query: 169   ccgcctcgccgccgctgcgctgttccaggaccagaccaacccaagaaccgcggcagcaag 228
              || ||| ||||||| ||| ||||||||||||||||||||||||||| |    |||| ||
Sbjct: 35957 gcggctcaccgccgcggcggtgttccaggaccagaccaacccaagaaac---ccagcgag 36013

                                                                         
Query: 229   caaggggggcgatgaagaagacgaggaggggtacggagaggtggaccgcatcgtctccag 288
             |||||| |||      || ||||| |||| |||||| ||||||||||| || || |||||
Sbjct: 36014 caagggaggc------gacgacgatgaggcgtacggcgaggtggaccgtattgtgtccag 36067

                                                                         
Query: 289   ccggaccgtcaagaacgcggtgttcgcggaggacggctcggccaccaccgtcaccgccac 348
             ||| ||| |||||||  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 36068 ccgcaccatcaagaatccggtgttcgcggaggacggctcggccaccacggtcaccgccac 36127

              
Query: 349   g 349
             |
Sbjct: 36128 g 36128
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  182 bits (92), Expect = 5e-43
 Identities = 251/301 (83%), Gaps = 11/301 (3%)
 Strand = Plus / Minus

                                                                           
Query: 50      ccaatggaggccgtcctgcgacatccatccctttcgcgcctcaaagccccgaacccagct 109
               ||||||||||| ||||| ||||| ||||||||||| ||||||||| |||| |||||   |
Sbjct: 1798522 ccaatggaggctgtcctacgacacccatccctttcccgcctcaaaccccccaaccccaat 1798463

                                                                           
Query: 110     gctcacagaac-ccagtacctctccagcaccgtcccttgccgtcctcgcgtccccaagcg 168
               ||||| ||||| ||||  |||||||| ||||||||||| ||| | |||  ||||||| ||
Sbjct: 1798462 gctcagagaactccagc-cctctccatcaccgtccctttccggcttcgtctccccaaccg 1798404

                                                                           
Query: 169     ccgcctcgccgccgctgcgctgttccaggaccagaccaacccaagaaccgcggcagcaag 228
                || ||| ||||||| ||| ||||||||||||||||||||||||||| |    |||| ||
Sbjct: 1798403 gcggctcaccgccgcggcggtgttccaggaccagaccaacccaagaaac---ccagcgag 1798347

                                                                           
Query: 229     caaggggggcgatgaagaagacgaggaggggtacggagaggtggaccgcatcgtctccag 288
               |||||| |||      || ||||| |||| |||||| ||||||||||| || || |||||
Sbjct: 1798346 caagggaggc------gacgacgatgaggcgtacggcgaggtggaccgtattgtgtccag 1798293

                                                                           
Query: 289     ccggaccgtcaagaacgcggtgttcgcggaggacggctcggccaccaccgtcaccgccac 348
               ||| ||| |||||||  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1798292 ccgcaccatcaagaatccggtgttcgcggaggacggctcggccaccacggtcaccgccac 1798233

                
Query: 349     g 349
               |
Sbjct: 1798232 g 1798232



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 168      gccgcctcgccgccgctgcg 187
                ||||||||||||||||||||
Sbjct: 34032683 gccgcctcgccgccgctgcg 34032702
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>ref|XM_470182.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1167

 Score =  176 bits (89), Expect = 3e-41
 Identities = 248/298 (83%), Gaps = 11/298 (3%)
 Strand = Plus / Plus

                                                                       
Query: 53  atggaggccgtcctgcgacatccatccctttcgcgcctcaaagccccgaacccagctgct 112
           |||||||| ||||| ||||| ||||||||||| ||||||||| |||| |||||   ||||
Sbjct: 1   atggaggctgtcctacgacacccatccctttcccgcctcaaaccccccaaccccaatgct 60

                                                                       
Query: 113 cacagaac-ccagtacctctccagcaccgtcccttgccgtcctcgcgtccccaagcgccg 171
           || ||||| ||||  |||||||| ||||||||||| ||| | |||  ||||||| || ||
Sbjct: 61  cagagaactccagc-cctctccatcaccgtccctttccggcttcgtctccccaaccggcg 119

                                                                       
Query: 172 cctcgccgccgctgcgctgttccaggaccagaccaacccaagaaccgcggcagcaagcaa 231
            ||| ||||||| ||| ||||||||||||||||||||||||||| | |   ||| |||||
Sbjct: 120 gctcaccgccgcggcggtgttccaggaccagaccaacccaagaaaccc---agcgagcaa 176

                                                                       
Query: 232 ggggggcgatgaagaagacgaggaggggtacggagaggtggaccgcatcgtctccagccg 291
           ||| ||||| ||      ||| |||| |||||| ||||||||||| || || ||||||||
Sbjct: 177 gggaggcgacga------cgatgaggcgtacggcgaggtggaccgtattgtgtccagccg 230

                                                                     
Query: 292 gaccgtcaagaacgcggtgttcgcggaggacggctcggccaccaccgtcaccgccacg 349
            ||| |||||||  ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 231 caccatcaagaatccggtgttcgcggaggacggctcggccaccacggtcaccgccacg 288
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>dbj|AK099900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114D14, full
           insert sequence
          Length = 1293

 Score =  163 bits (82), Expect = 5e-37
 Identities = 235/283 (83%), Gaps = 11/283 (3%)
 Strand = Plus / Plus

                                                                       
Query: 68  cgacatccatccctttcgcgcctcaaagccccgaacccagctgctcacagaac-ccagta 126
           ||||| ||||||||||| ||||||||| |||| |||||   |||||| ||||| ||||  
Sbjct: 3   cgacacccatccctttcccgcctcaaaccccccaaccccaatgctcagagaactccagc- 61

                                                                       
Query: 127 cctctccagcaccgtcccttgccgtcctcgcgtccccaagcgccgcctcgccgccgctgc 186
           |||||||| ||||||||||| ||| | |||  ||||||| || || ||| ||||||| ||
Sbjct: 62  cctctccatcaccgtccctttccggcttcgtctccccaaccggcggctcaccgccgcggc 121

                                                                       
Query: 187 gctgttccaggaccagaccaacccaagaaccgcggcagcaagcaaggggggcgatgaaga 246
           | ||||||||||||||||||||||||||| | |   ||| |||||||| ||||| ||   
Sbjct: 122 ggtgttccaggaccagaccaacccaagaaaccc---agcgagcaagggaggcgacga--- 175

                                                                       
Query: 247 agacgaggaggggtacggagaggtggaccgcatcgtctccagccggaccgtcaagaacgc 306
              ||| |||| |||||| ||||||||||| || || |||||||| ||| |||||||  |
Sbjct: 176 ---cgatgaggcgtacggcgaggtggaccgtattgtgtccagccgcaccatcaagaatcc 232

                                                      
Query: 307 ggtgttcgcggaggacggctcggccaccaccgtcaccgccacg 349
           |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 233 ggtgttcgcggaggacggctcggccaccacggtcaccgccacg 275
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 287     agccggaccgtcaagaacgcggtgttcg 314
               ||||||||||||||||||| ||||||||
Sbjct: 4300753 agccggaccgtcaagaacgaggtgttcg 4300780
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 235     gggcgatgaagaagacgaggaggg 258
               ||||||||||||||||||||||||
Sbjct: 2848565 gggcgatgaagaagacgaggaggg 2848588
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>ref|XM_466169.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2240

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 228 gcaaggggggcgatgaagaagacgaggagg 257
           ||||||||||||| ||||| ||||||||||
Sbjct: 168 gcaaggggggcgaggaagacgacgaggagg 139
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>ref|XM_506821.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_H01.22
           mRNA
          Length = 2266

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 228 gcaaggggggcgatgaagaagacgaggagg 257
           ||||||||||||| ||||| ||||||||||
Sbjct: 194 gcaaggggggcgaggaagacgacgaggagg 165
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 228      gcaaggggggcgatgaagaagacgaggagg 257
                ||||||||||||| ||||| ||||||||||
Sbjct: 20830925 gcaaggggggcgaggaagacgacgaggagg 20830896
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 165     agcgccgcctcgccgccgctgc 186
               ||||||||||||||||||||||
Sbjct: 1654360 agcgccgcctcgccgccgctgc 1654339
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 167     cgccgcctcgccgccgctgcgc 188
               ||||||||||||||||||||||
Sbjct: 3691568 cgccgcctcgccgccgctgcgc 3691547
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>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_H01
          Length = 121377

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 228   gcaaggggggcgatgaagaagacgaggagg 257
             ||||||||||||| ||||| ||||||||||
Sbjct: 73386 gcaaggggggcgaggaagacgacgaggagg 73357
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>dbj|AK099161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068L16, full
           insert sequence
          Length = 2240

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 228 gcaaggggggcgatgaagaagacgaggagg 257
           ||||||||||||| ||||| ||||||||||
Sbjct: 168 gcaaggggggcgaggaagacgacgaggagg 139
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>dbj|AK067736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117E08, full
           insert sequence
          Length = 2265

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 228 gcaaggggggcgatgaagaagacgaggagg 257
           ||||||||||||| ||||| ||||||||||
Sbjct: 193 gcaaggggggcgaggaagacgacgaggagg 164
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>ref|NM_189671.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 caagcgccgcctcgccgccgc 183
           |||||||||||||||||||||
Sbjct: 339 caagcgccgcctcgccgccgc 359
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>gb|AY459339.1| Oryza sativa (japonica cultivar-group) clone CL005170.5 R2R3-MYB gene
            region
          Length = 9432

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 163  caagcgccgcctcgccgccgc 183
            |||||||||||||||||||||
Sbjct: 1725 caagcgccgcctcgccgccgc 1705
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>gb|AF474135.1| Oryza sativa typical P-type R2R3 Myb protein gene, complete cds
          Length = 1507

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 163 caagcgccgcctcgccgccgc 183
           |||||||||||||||||||||
Sbjct: 493 caagcgccgcctcgccgccgc 473
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 233      gggggcgatgaagaagacgaggagg 257
                ||||||||||||||||| |||||||
Sbjct: 18326612 gggggcgatgaagaagaggaggagg 18326636
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 163     caagcgccgcctcgccgccgc 183
               |||||||||||||||||||||
Sbjct: 4917579 caagcgccgcctcgccgccgc 4917559



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 166     gcgccgcctcgccgccgctg 185
               ||||||||||||||||||||
Sbjct: 2906416 gcgccgcctcgccgccgctg 2906435
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463G11
          Length = 154188

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 233   gggggcgatgaagaagacgaggagg 257
             ||||||||||||||||| |||||||
Sbjct: 41348 gggggcgatgaagaagaggaggagg 41372
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>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0671B11
          Length = 168372

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   caagcgccgcctcgccgccgc 183
             |||||||||||||||||||||
Sbjct: 18032 caagcgccgcctcgccgccgc 18012
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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    caagcgccgcctcgccgccgc 183
              |||||||||||||||||||||
Sbjct: 162228 caagcgccgcctcgccgccgc 162208
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>dbj|AK109125.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-D04, full
           insert sequence
          Length = 1089

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 caagcgccgcctcgccgccgc 183
           |||||||||||||||||||||
Sbjct: 470 caagcgccgcctcgccgccgc 490
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>dbj|AK102408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092M06, full
           insert sequence
          Length = 1687

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 233 gggggcgatgaagaagacgaggagg 257
           ||||||||||||||||| |||||||
Sbjct: 225 gggggcgatgaagaagaggaggagg 249
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 238     cgatgaagaagacgaggaggg 258
               |||||||||||||||||||||
Sbjct: 1416698 cgatgaagaagacgaggaggg 1416718
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>gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complete sequence
          Length = 197641

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    ccagctgctcacagaacccag 124
              |||||||||||||||||||||
Sbjct: 109803 ccagctgctcacagaacccag 109783
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>ref|NM_184416.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 gcgccgcctcgccgccgctg 185
           ||||||||||||||||||||
Sbjct: 505 gcgccgcctcgccgccgctg 486
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>ref|XM_472337.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 cgatgaagaagacgaggagg 257
           ||||||||||||||||||||
Sbjct: 339 cgatgaagaagacgaggagg 358
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 167     cgccgcctcgccgccgctgcgctg 190
               ||||||| ||||||||||||||||
Sbjct: 1260958 cgccgccgcgccgccgctgcgctg 1260981
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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 306  cggtgttcgcggaggacggctcgg 329
            ||||| ||||||||||||||||||
Sbjct: 7384 cggtgctcgcggaggacggctcgg 7407
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>gb|AF330146.1|AF330146 Gallus gallus integrin alpha 3A subunit cytoplasmic domain variant
           mRNA, complete cds
          Length = 4108

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 cggccaccaccgtcaccgcc 346
           ||||||||||||||||||||
Sbjct: 799 cggccaccaccgtcaccgcc 780
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 238      cgatgaagaagacgaggagg 257
                ||||||||||||||||||||
Sbjct: 19619400 cgatgaagaagacgaggagg 19619419
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 167      cgccgcctcgccgccgctgc 186
                ||||||||||||||||||||
Sbjct: 16568312 cgccgcctcgccgccgctgc 16568331
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>gb|AC011443.6|AC011443 Homo sapiens chromosome 19 clone CTC-218B8, complete sequence
          Length = 156776

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   ccagaccaacccaagaaccg 218
             ||||||||||||||||||||
Sbjct: 74880 ccagaccaacccaagaaccg 74861
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>gb|AC013733.10| Homo sapiens BAC clone RP11-553I15 from 2, complete sequence
          Length = 152306

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    ggccacaagcctcctcccgccccc 51
             ||||||| ||||||||||||||||
Sbjct: 81842 ggccacacgcctcctcccgccccc 81819
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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
              sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    gccgcctcgccgccgctgcg 187
              ||||||||||||||||||||
Sbjct: 115480 gccgcctcgccgccgctgcg 115461
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>ref|NM_204146.1| Gallus gallus integrin, alpha 3 (antigen CD49C, alpha 3 subunit of
           VLA-3 receptor) (ITGA3), mRNA
          Length = 4108

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 cggccaccaccgtcaccgcc 346
           ||||||||||||||||||||
Sbjct: 799 cggccaccaccgtcaccgcc 780
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>gb|AC073977.6| Homo sapiens BAC clone RP11-253H16 from 2, complete sequence
          Length = 165020

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    ggccacaagcctcctcccgccccc 51
             ||||||| ||||||||||||||||
Sbjct: 17095 ggccacacgcctcctcccgccccc 17072
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>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0030H07
          Length = 168253

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    gcgccgcctcgccgccgctg 185
              ||||||||||||||||||||
Sbjct: 113414 gcgccgcctcgccgccgctg 113433
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>dbj|AK071618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104J18, full
           insert sequence
          Length = 916

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 gccgcctcgccgccgctgcg 187
           ||||||||||||||||||||
Sbjct: 117 gccgcctcgccgccgctgcg 98
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     ccaccaccgtcaccgccacg 349
               ||||||||||||||||||||
Sbjct: 3190390 ccaccaccgtcaccgccacg 3190409
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 167      cgccgcctcgccgccgctgc 186
                ||||||||||||||||||||
Sbjct: 16521545 cgccgcctcgccgccgctgc 16521564
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>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07,
             complete sequence
          Length = 166410

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   cgatgaagaagacgaggagg 257
             ||||||||||||||||||||
Sbjct: 70126 cgatgaagaagacgaggagg 70145
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>emb|AL831812.5|CNS08CAP Oryza sativa chromosome 12, . BAC OSJNBa0054H15 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 155947

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  cgccgcctcgccgccgctgc 186
            ||||||||||||||||||||
Sbjct: 5478 cgccgcctcgccgccgctgc 5459
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>emb|AL713948.4|CNS07YPR Oryza sativa chromosome 12, . BAC OJ1008_A01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 129944

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    cgccgcctcgccgccgctgc 186
              ||||||||||||||||||||
Sbjct: 102454 cgccgcctcgccgccgctgc 102435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,398,088
Number of Sequences: 3902068
Number of extensions: 2398088
Number of successful extensions: 98520
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97301
Number of HSP's gapped (non-prelim): 1213
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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