>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 123 ASDSTGSTAPPTPSKCSRMLPPSPGASSTSRTPQ 224
           +S +T  TA P P +C    PP PG++S S  P+
Sbjct: 13  SSSATWRTARPAPRRCGSCRPPPPGSASPSPRPR 46

>GUAA_PELUB (Q4FMW8) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 521

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +2

Query: 137 REYGAAYAKQVLSDASSFTWGIFNQPDPSDRRPADGDTVTLAVRDTNGIASTSGSTIELS 316
           RE+G A   +V +  S+ T   FN+ + SD   +  D V+   ++   IAST  S + + 
Sbjct: 107 REFGLATINKVSN--STLTKNFFNKNNRSDVWMSHADQVSKMPKNFKIIASTKNSKLTII 164

Query: 317 ARSVGGITGDNLKEQVDGVLYH-EVVH 394
                    +N+KE   GV +H EV H
Sbjct: 165 ---------ENIKENFYGVQFHPEVTH 182

>HM23_CAEEL (P34663) Homeobox protein ceh-23|
          Length = 305

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
 Frame = -3

Query: 393 CTTSWYSTPSTCSLRLSPVIP-----------PTERALSSMVLPLVEAMPFVSRTARVTV 247
           C TS    PST +  LSP +P           P  +  +S++LP + A PF+   + +  
Sbjct: 36  CPTS--CIPSTSTGMLSPNLPFSATIPRVNLFPPSQPANSLILPTIPAQPFIPNPSLLQA 93

Query: 246 SPSA 235
           +PSA
Sbjct: 94  NPSA 97

>SWC5_USTMA (Q4P6D5) SWR1-complex protein 5|
          Length = 376

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 111 AQPAASDSTGSTAPPTPSKCSRMLPPSPGASSTSRTP 221
           +Q A+  ST S+AP   +  S  LP SP ++STS +P
Sbjct: 246 SQIASPTSTTSSAPAPSASASAPLPTSPASTSTSSSP 282

>DDI1_YEAST (P40087) DNA damage-inducible protein DDI1 (v-SNARE-master 1)|
          Length = 428

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 126 SDSTGSTAPPTPSKCSRMLPPSPGA 200
           S +T S  P TP+K S  LPP PGA
Sbjct: 336 SVTTSSDKPLTPTKTSSTLPPQPGA 360

>MAGE1_HUMAN (Q9HCI5) Melanoma-associated antigen E1 (MAGE-E1 antigen)|
           (Hepatocellular carcinoma-associated protein 1)
          Length = 957

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 117 PAASDSTGSTAPPTPSKC-SRMLPPSPGASSTSRTP 221
           P +S+   ++ PPT S+  S  LPP+PG  +++  P
Sbjct: 142 PTSSEEPSTSVPPTASEVPSTSLPPTPGEGTSTSVP 177

>MAGE1_MACFA (Q9BE18) Melanoma-associated antigen E1 (MAGE-E1 antigen)|
          Length = 957

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 114 QPAASDSTGSTAPPTP-SKCSRMLPPSPGASSTSRTP 221
           QP A +   ++ PPTP    S  +PP+PG   ++  P
Sbjct: 297 QPTAGEGPSTSVPPTPCGGLSTSVPPTPGEGLSTSVP 333

>HPAI_ECOLI (Q47098) 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC|
           4.1.2.-) (HHED aldolase)
          Length = 262

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -3

Query: 309 SMVLPLVEAMPFVSRTARVTVSPSAGLRSEGSG------WLKMPQVKEEASESTCL 160
           ++++P+V+         R T  P AG+R  GS       W ++P   ++A++  C+
Sbjct: 89  TLLVPMVQNADEAREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCV 144

>BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 (BBC1 protein)|
          Length = 1157

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -3

Query: 408 PHCHTCTTSWYSTPSTCSLRLSPVIPPTERALSSMVLPLVEAMPFVSRTARVTVSPS 238
           PH      S    PS  S+  +P +PP   ALS+  +P V  +P VS       +PS
Sbjct: 691 PHPVPSAPSAPPVPSAPSVPSAPPVPPAPPALSAPSVPPVPPVPPVSSAPPALSAPS 747

>VE2_HPV2A (P25482) Regulatory protein E2|
          Length = 391

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 111 AQPAASDSTGSTAPPTPSKCSRMLPPSPGA 200
           A  A S   G  APPT + CS   P SP A
Sbjct: 230 AASAESTGAGRAAPPTQALCSAQAPTSPPA 259

>THIE_STRA3 (Q8E5W9) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP|
           pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate
           synthase)
          Length = 223

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +2

Query: 149 AAYAKQVLSDASSFTWGIFNQPDP-SDRRPADGDTVTLAVRDTNGIASTSGSTIELSARS 325
           A Y K  LS       G FN     +D +PA G+  T AVR+ N          ++   +
Sbjct: 115 AEYQKSQLSVVDYIGIGPFNPTQSKADAKPAVGNRTTKAVREINQ---------DIPIVA 165

Query: 326 VGGITGDNLKEQVD 367
           +GGIT D + + ++
Sbjct: 166 IGGITSDFVHDIIE 179

>DAF_PONPY (P49457) Complement decay-accelerating factor precursor (CD55|
           antigen) (Fragment)
          Length = 340

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -3

Query: 405 HCHTCTTS-----WYSTPSTCSLR-LSPVIPPTERALSSMVLPLVEAMPFVSRTARVTVS 244
           H   CT +     W   P  C  + L+  +PPT +  +++ +P  E  P   +T   T +
Sbjct: 222 HSIYCTVNDDEGEWSGPPPECRGKSLTSKVPPTVQKPTTVNVPTTEVSPTSQKTTTKTTT 281

Query: 243 PSA 235
           P+A
Sbjct: 282 PNA 284

>VE2_HPV27 (P36789) Regulatory protein E2|
          Length = 388

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +3

Query: 120 AASDSTGSTAPPTPSKCSRMLPPSPGA 200
           AAS  TG TAPPT   C+   PPSP A
Sbjct: 231 AASARTG-TAPPTNLLCTAPAPPSPPA 256

>DAF_HUMAN (P08174) Complement decay-accelerating factor precursor (CD55|
           antigen)
          Length = 381

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -3

Query: 405 HCHTCTTS-----WYSTPSTCSLR-LSPVIPPTERALSSMVLPLVEAMPFVSRTARVTVS 244
           H   CT +     W   P  C  + L+  +PPT +  +++ +P  E  P   +T   T +
Sbjct: 263 HSIYCTVNNDEGEWSGPPPECRGKSLTSKVPPTVQKPTTVNVPTTEVSPTSQKTTTKTTT 322

Query: 243 PSA 235
           P+A
Sbjct: 323 PNA 325

>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 117  PAASDSTGSTAPPTPSKCSRMLPPSPGASSTSRTP 221
            P +   TG+ APPT +      PP+ GASS S  P
Sbjct: 1240 PPSGPGTGAGAPPTAA------PPTGGASSNSAAP 1268

>ACHA4_PANTR (Q5IS77) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 627

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 114 QPAASDSTGSTAPPTPSKCSRM-LPPSPGASSTSRTPQ 224
           +P A+  T S  PP+PS C  + +P  PG S  S + Q
Sbjct: 391 EPPATSGTQSLHPPSPSFCIPLDVPAEPGPSCKSPSDQ 428

>ACHA4_HUMAN (P43681) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 627

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 114 QPAASDSTGSTAPPTPSKCSRM-LPPSPGASSTSRTPQ 224
           +P A+  T S  PP+PS C  + +P  PG S  S + Q
Sbjct: 391 EPPATSGTQSLHPPSPSFCVPLDVPAEPGPSCKSPSDQ 428

>P60_LISSE (Q01838) Protein p60 precursor (Invasion-associated protein)|
          Length = 523

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 212 PDPSDRRPADGDTVTLAVRDTNG-IASTSGSTIELSARSVGGITGDNLKEQVDGVL 376
           P P+     +  + T+   DT G IAST G+T+    +++ G+T DNL  QV  VL
Sbjct: 307 PAPAPTVNTNASSYTVKSGDTLGKIASTFGTTVS-KIKALNGLTSDNL--QVGDVL 359

>NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4)|
          Length = 1176

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
 Frame = -3

Query: 372  TPSTCSLRLSPVIPPTERALSSMVLPLVEAMPFVSRTARVTVSPSAGLRSEG--SGWLKM 199
            +PS+CS    P  PP+    SS  +      P  S T   T S S      G  S W+  
Sbjct: 999  SPSSCSSSALPPSPPSTPPRSSSPVTSPPQSPTSSATPATTASSSCTTNPSGPASPWISC 1058

Query: 198  PQVKEEAS 175
            P  K   S
Sbjct: 1059 PFHKRNFS 1066

>TIRAP_MOUSE (Q99JY1) Toll-interleukin 1 receptor domain-containing adapter|
           protein (TIR domain-containing adapter protein) (MyD88
           adapter-like protein) (Adaptor protein Wyatt)
          Length = 241

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 417 SCS-PHCHTCTTSWYSTPSTCSLRLSPVIPPTERALSS 307
           SCS P  H+   S  S+PS+CS  +SP  PPT    SS
Sbjct: 60  SCSSPPSHSSPES-RSSPSSCSSGMSPTSPPTHVDSSS 96

>AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A-anchoring|
           protein 2) (PRKA2) (AKAP-2)
          Length = 1103

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 141 STAPPTPSKCSRMLPPSPGASSTSR 215
           S  P  P  CSR   PSPG   TSR
Sbjct: 139 SQLPDLPILCSRTAEPSPGQDGTSR 163

>DNM1L_RAT (O35303) Dynamin-1-like protein (EC 3.6.5.5) (Dynamin-like protein)|
          Length = 755

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 22/81 (27%), Positives = 32/81 (39%)
 Frame = +2

Query: 128 RFDREYGAAYAKQVLSDASSFTWGIFNQPDPSDRRPADGDTVTLAVRDTNGIASTSGSTI 307
           R  RE  +A ++   S   S       +P P+    ADG  +    R+T  +AS  G   
Sbjct: 532 RLARELPSAVSRDKSSKVPSALAPASQEPSPAASAEADGKLIQDNRRETKNVASAGGGIG 591

Query: 308 ELSARSVGGITGDNLKEQVDG 370
           +      GG  GD  +E   G
Sbjct: 592 D------GGRIGDGGQEPTTG 606

>RIB2_YEAST (Q12362) DRAP deaminase|
          Length = 591

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
 Frame = -3

Query: 408 PHCHTCT---TSWYSTPSTCSLRLSPVIP------PTERALSSMVLPLVEAMPFVSRTAR 256
           P+C T     T  Y+T   CS RLS   P       T+ A+ ++ + ++E   FV     
Sbjct: 496 PNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVFVGVMEPDTFVKNNTS 555

Query: 255 VTVSPSAGLRSEGSGWLKMPQVKEEAS 175
           +       L S G  ++++P  +EE +
Sbjct: 556 LN-----KLESHGVNYIQIPGYEEECT 577


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,660,022
Number of Sequences: 219361
Number of extensions: 784361
Number of successful extensions: 4618
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4598
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)