ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet20b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.38
2ref|XM_319528.2| Anopheles gambiae str. PEST ENSANGP00000017784 ... 44 0.38
3gb|AC118731.11| Mus musculus chromosome 1, clone RP24-169M20, co... 44 0.38
4gb|AE010386.1| Methanopyrus kandleri AV19 section 85 of 157 of t... 42 1.5
5gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
7gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
8gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
11dbj|AK064170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
13ref|XM_478470.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
14ref|NM_008006.1| Mus musculus fibroblast growth factor 2 (Fgf2),... 40 5.9
15gb|AE008965.1| Agrobacterium tumefaciens str. C58 AT plasmid sec... 40 5.9
16gb|AE007913.1| Agrobacterium tumefaciens str. C58 plasmid AT, se... 40 5.9
17gb|AY701414.1| Pavlova lutheri beta-ketoacyl-CoA synthase mRNA, ... 40 5.9
18emb|AL645982.26| Mouse DNA sequence from clone DN-452A22 on chro... 40 5.9
19gb|AC124907.3| Equus caballus clone CH241-409I22, complete sequence 40 5.9
20gb|AY027552.1|AY027552S1 Mus musculus fibroblast growth factor 2... 40 5.9
21gb|AY027551.1| Mus musculus clone a673 fibroblast growth factor ... 40 5.9
22gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.9
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
25dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
26dbj|AP005169.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
27dbj|AK058558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
28gb|AF065905.1|AF065905 Mus musculus strain NOD/LtJ basic fibrobl... 40 5.9
29gb|AF065904.1|AF065904 Mus musculus strain C57BL/6J basic fibrob... 40 5.9
30gb|AF065903.1|AF065903 Mus musculus strain A/J basic fibroblast ... 40 5.9
31gb|DP000020.1| Equus caballus target 1 genomic scaffold 40 5.9
32emb|AL662862.16| Mouse DNA sequence from clone CT7-139P23 on chr... 40 5.9
33gb|M30644.1|MUSFGFD Mouse basic fibroblast growth factor (Fgfb) ... 40 5.9
34emb|AL691478.5| Mouse DNA sequence from clone RP23-137F6 on chro... 40 5.9

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 202     gagcccaccggccagcagcaac 223
               ||||||||||||||||||||||
Sbjct: 4504745 gagcccaccggccagcagcaac 4504766



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>ref|XM_319528.2| Anopheles gambiae str. PEST ENSANGP00000017784 (ENSANGG00000015295),
            partial mRNA
          Length = 1602

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 196  cagggtgagcccaccggccagcagca 221
            |||||||||| |||||||||||||||
Sbjct: 1515 cagggtgagcgcaccggccagcagca 1490



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>gb|AC118731.11| Mus musculus chromosome 1, clone RP24-169M20, complete sequence
          Length = 160688

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 344   agctacatccaaaggaagctct 365
             ||||||||||||||||||||||
Sbjct: 69199 agctacatccaaaggaagctct 69178



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>gb|AE010386.1| Methanopyrus kandleri AV19 section 85 of 157 of the complete genome
          Length = 10355

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 121  cgtcgaggaggagctcaacaactacgtcg 149
            ||||||||||||||| || ||||||||||
Sbjct: 7155 cgtcgaggaggagcttaagaactacgtcg 7183



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>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0094P07, complete sequence
          Length = 162311

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    ctcgaccttgtccatggagca 115
             |||||||||||||||||||||
Sbjct: 11117 ctcgaccttgtccatggagca 11097



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 293     gcgccgccgtcctccgttgcc 313
               |||||||||||||||||||||
Sbjct: 4858658 gcgccgccgtcctccgttgcc 4858678



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>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16,
              complete sequence
          Length = 159092

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 293    gcgccgccgtcctccgttgcc 313
              |||||||||||||||||||||
Sbjct: 136889 gcgccgccgtcctccgttgcc 136869



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>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0088N01, complete sequence
          Length = 123954

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    ctcgaccttgtccatggagca 115
             |||||||||||||||||||||
Sbjct: 63933 ctcgaccttgtccatggagca 63913



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 95      ctcgaccttgtccatggagca 115
               |||||||||||||||||||||
Sbjct: 5286282 ctcgaccttgtccatggagca 5286302



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 293     gcgccgccgtcctccgttgcc 313
               |||||||||||||||||||||
Sbjct: 4857873 gcgccgccgtcctccgttgcc 4857893



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>dbj|AK064170.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A03, full
           insert sequence
          Length = 1769

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 95  ctcgaccttgtccatggagca 115
           |||||||||||||||||||||
Sbjct: 856 ctcgaccttgtccatggagca 836



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 95      ctcgaccttgtccatggagca 115
               |||||||||||||||||||||
Sbjct: 5352759 ctcgaccttgtccatggagca 5352779



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>ref|XM_478470.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1320

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 291 cggcgccgccgtcctccgttgccg 314
           |||||||||||||||||| |||||
Sbjct: 157 cggcgccgccgtcctccgatgccg 134



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>ref|NM_008006.1| Mus musculus fibroblast growth factor 2 (Fgf2), mRNA
          Length = 465

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 ggcggcgccgccgtcctccg 308
           ||||||||||||||||||||
Sbjct: 57  ggcggcgccgccgtcctccg 38



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>gb|AE008965.1| Agrobacterium tumefaciens str. C58 AT plasmid section 40 of 49 of the
            complete sequence
          Length = 11039

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tgtccatggagcagccagcgtcga 126
            |||||||||||||| |||||||||
Sbjct: 6876 tgtccatggagcaggcagcgtcga 6899



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>gb|AE007913.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 41 of 50 of
            the complete sequence
          Length = 6885

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tgtccatggagcagccagcgtcga 126
            |||||||||||||| |||||||||
Sbjct: 4074 tgtccatggagcaggcagcgtcga 4097



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>gb|AY701414.1| Pavlova lutheri beta-ketoacyl-CoA synthase mRNA, complete cds
          Length = 2061

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 gggcggcgccgccgtcctcc 307
           ||||||||||||||||||||
Sbjct: 923 gggcggcgccgccgtcctcc 942



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>emb|AL645982.26| Mouse DNA sequence from clone DN-452A22 on chromosome 3 Contains the 5'
              end of the Fgf2 gene for fibroblast growth factor 2, a
              novel gene (A930011G24RIK), a mitochondrial ribosomal
              protein S33 (Mrps33) pseudogene, a novel gene (gene model
              1805 (NCBI) (Gm1805)), the Cetn4 gene for centrin 4, a
              novel gene, the 5' end of the Il21 gene for interleukin 21
              and a CpG island, complete sequence
          Length = 133023

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    ggcggcgccgccgtcctccg 308
              ||||||||||||||||||||
Sbjct: 126796 ggcggcgccgccgtcctccg 126777



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>gb|AC124907.3| Equus caballus clone CH241-409I22, complete sequence
          Length = 202157

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    tgtctagcttctgtagtaca 85
             ||||||||||||||||||||
Sbjct: 40938 tgtctagcttctgtagtaca 40957



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>gb|AY027552.1|AY027552S1 Mus musculus fibroblast growth factor 2 (Fgf2) gene, exon 1a
          Length = 218

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 ggcggcgccgccgtcctccg 308
           ||||||||||||||||||||
Sbjct: 57  ggcggcgccgccgtcctccg 38



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>gb|AY027551.1| Mus musculus clone a673 fibroblast growth factor 2 (Fgf2) mRNA,
           complete cds, alternatively spliced
          Length = 462

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 ggcggcgccgccgtcctccg 308
           ||||||||||||||||||||
Sbjct: 57  ggcggcgccgccgtcctccg 38



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 286     cagggcggcgccgccgtcct 305
               ||||||||||||||||||||
Sbjct: 3637649 cagggcggcgccgccgtcct 3637668



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 291      cggcgccgccgtcctccgttgccg 314
                |||||||||||||||||| |||||
Sbjct: 20431604 cggcgccgccgtcctccgatgccg 20431581



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      cattattgctgctgcttctc 64
               ||||||||||||||||||||
Sbjct: 3087044 cattattgctgctgcttctc 3087025



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>dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419H03
          Length = 129020

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    cattattgctgctgcttctc 64
             ||||||||||||||||||||
Sbjct: 15198 cattattgctgctgcttctc 15179



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>dbj|AP005169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0077J18
          Length = 180944

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   cggcgccgccgtcctccgttgccg 314
             |||||||||||||||||| |||||
Sbjct: 12714 cggcgccgccgtcctccgatgccg 12691



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>dbj|AK058558.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D07, full
           insert sequence
          Length = 972

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  cattattgctgctgcttctc 64
           ||||||||||||||||||||
Sbjct: 473 cattattgctgctgcttctc 454



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>gb|AF065905.1|AF065905 Mus musculus strain NOD/LtJ basic fibroblast growth factor (Fgf2)
           mRNA, complete cds
          Length = 465

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 ggcggcgccgccgtcctccg 308
           ||||||||||||||||||||
Sbjct: 57  ggcggcgccgccgtcctccg 38



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>gb|AF065904.1|AF065904 Mus musculus strain C57BL/6J basic fibroblast growth factor (Fgf2)
           mRNA, complete cds
          Length = 465

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 ggcggcgccgccgtcctccg 308
           ||||||||||||||||||||
Sbjct: 57  ggcggcgccgccgtcctccg 38



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>gb|AF065903.1|AF065903 Mus musculus strain A/J basic fibroblast growth factor (Fgf2) mRNA,
           complete cds
          Length = 465

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 ggcggcgccgccgtcctccg 308
           ||||||||||||||||||||
Sbjct: 57  ggcggcgccgccgtcctccg 38



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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     tgtctagcttctgtagtaca 85
              ||||||||||||||||||||
Sbjct: 549132 tgtctagcttctgtagtaca 549151



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>emb|AL662862.16| Mouse DNA sequence from clone CT7-139P23 on chromosome 3, complete
             sequence
          Length = 120808

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ggcggcgccgccgtcctccg 308
             ||||||||||||||||||||
Sbjct: 45800 ggcggcgccgccgtcctccg 45781



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>gb|M30644.1|MUSFGFD Mouse basic fibroblast growth factor (Fgfb) mRNA, complete cds
          Length = 465

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 ggcggcgccgccgtcctccg 308
           ||||||||||||||||||||
Sbjct: 57  ggcggcgccgccgtcctccg 38



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>emb|AL691478.5| Mouse DNA sequence from clone RP23-137F6 on chromosome 3, complete
              sequence
          Length = 120928

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    ggcggcgccgccgtcctccg 308
              ||||||||||||||||||||
Sbjct: 107032 ggcggcgccgccgtcctccg 107013


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,106,399
Number of Sequences: 3902068
Number of extensions: 3106399
Number of successful extensions: 64513
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64068
Number of HSP's gapped (non-prelim): 445
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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