| Clone Name | baet20b10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 gagcccaccggccagcagcaac 223 |||||||||||||||||||||| Sbjct: 4504745 gagcccaccggccagcagcaac 4504766
>ref|XM_319528.2| Anopheles gambiae str. PEST ENSANGP00000017784 (ENSANGG00000015295), partial mRNA Length = 1602 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 196 cagggtgagcccaccggccagcagca 221 |||||||||| ||||||||||||||| Sbjct: 1515 cagggtgagcgcaccggccagcagca 1490
>gb|AC118731.11| Mus musculus chromosome 1, clone RP24-169M20, complete sequence Length = 160688 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 agctacatccaaaggaagctct 365 |||||||||||||||||||||| Sbjct: 69199 agctacatccaaaggaagctct 69178
>gb|AE010386.1| Methanopyrus kandleri AV19 section 85 of 157 of the complete genome Length = 10355 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 121 cgtcgaggaggagctcaacaactacgtcg 149 ||||||||||||||| || |||||||||| Sbjct: 7155 cgtcgaggaggagcttaagaactacgtcg 7183
>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094P07, complete sequence Length = 162311 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 ctcgaccttgtccatggagca 115 ||||||||||||||||||||| Sbjct: 11117 ctcgaccttgtccatggagca 11097
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 gcgccgccgtcctccgttgcc 313 ||||||||||||||||||||| Sbjct: 4858658 gcgccgccgtcctccgttgcc 4858678
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 gcgccgccgtcctccgttgcc 313 ||||||||||||||||||||| Sbjct: 136889 gcgccgccgtcctccgttgcc 136869
>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0088N01, complete sequence Length = 123954 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 ctcgaccttgtccatggagca 115 ||||||||||||||||||||| Sbjct: 63933 ctcgaccttgtccatggagca 63913
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 ctcgaccttgtccatggagca 115 ||||||||||||||||||||| Sbjct: 5286282 ctcgaccttgtccatggagca 5286302
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 gcgccgccgtcctccgttgcc 313 ||||||||||||||||||||| Sbjct: 4857873 gcgccgccgtcctccgttgcc 4857893
>dbj|AK064170.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A03, full insert sequence Length = 1769 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 ctcgaccttgtccatggagca 115 ||||||||||||||||||||| Sbjct: 856 ctcgaccttgtccatggagca 836
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 ctcgaccttgtccatggagca 115 ||||||||||||||||||||| Sbjct: 5352759 ctcgaccttgtccatggagca 5352779
>ref|XM_478470.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1320 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 cggcgccgccgtcctccgttgccg 314 |||||||||||||||||| ||||| Sbjct: 157 cggcgccgccgtcctccgatgccg 134
>ref|NM_008006.1| Mus musculus fibroblast growth factor 2 (Fgf2), mRNA Length = 465 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 57 ggcggcgccgccgtcctccg 38
>gb|AE008965.1| Agrobacterium tumefaciens str. C58 AT plasmid section 40 of 49 of the complete sequence Length = 11039 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 tgtccatggagcagccagcgtcga 126 |||||||||||||| ||||||||| Sbjct: 6876 tgtccatggagcaggcagcgtcga 6899
>gb|AE007913.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 41 of 50 of the complete sequence Length = 6885 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 tgtccatggagcagccagcgtcga 126 |||||||||||||| ||||||||| Sbjct: 4074 tgtccatggagcaggcagcgtcga 4097
>gb|AY701414.1| Pavlova lutheri beta-ketoacyl-CoA synthase mRNA, complete cds Length = 2061 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gggcggcgccgccgtcctcc 307 |||||||||||||||||||| Sbjct: 923 gggcggcgccgccgtcctcc 942
>emb|AL645982.26| Mouse DNA sequence from clone DN-452A22 on chromosome 3 Contains the 5' end of the Fgf2 gene for fibroblast growth factor 2, a novel gene (A930011G24RIK), a mitochondrial ribosomal protein S33 (Mrps33) pseudogene, a novel gene (gene model 1805 (NCBI) (Gm1805)), the Cetn4 gene for centrin 4, a novel gene, the 5' end of the Il21 gene for interleukin 21 and a CpG island, complete sequence Length = 133023 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 126796 ggcggcgccgccgtcctccg 126777
>gb|AC124907.3| Equus caballus clone CH241-409I22, complete sequence Length = 202157 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tgtctagcttctgtagtaca 85 |||||||||||||||||||| Sbjct: 40938 tgtctagcttctgtagtaca 40957
>gb|AY027552.1|AY027552S1 Mus musculus fibroblast growth factor 2 (Fgf2) gene, exon 1a Length = 218 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 57 ggcggcgccgccgtcctccg 38
>gb|AY027551.1| Mus musculus clone a673 fibroblast growth factor 2 (Fgf2) mRNA, complete cds, alternatively spliced Length = 462 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 57 ggcggcgccgccgtcctccg 38
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cagggcggcgccgccgtcct 305 |||||||||||||||||||| Sbjct: 3637649 cagggcggcgccgccgtcct 3637668
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 cggcgccgccgtcctccgttgccg 314 |||||||||||||||||| ||||| Sbjct: 20431604 cggcgccgccgtcctccgatgccg 20431581
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cattattgctgctgcttctc 64 |||||||||||||||||||| Sbjct: 3087044 cattattgctgctgcttctc 3087025
>dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419H03 Length = 129020 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cattattgctgctgcttctc 64 |||||||||||||||||||| Sbjct: 15198 cattattgctgctgcttctc 15179
>dbj|AP005169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077J18 Length = 180944 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 cggcgccgccgtcctccgttgccg 314 |||||||||||||||||| ||||| Sbjct: 12714 cggcgccgccgtcctccgatgccg 12691
>dbj|AK058558.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D07, full insert sequence Length = 972 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cattattgctgctgcttctc 64 |||||||||||||||||||| Sbjct: 473 cattattgctgctgcttctc 454
>gb|AF065905.1|AF065905 Mus musculus strain NOD/LtJ basic fibroblast growth factor (Fgf2) mRNA, complete cds Length = 465 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 57 ggcggcgccgccgtcctccg 38
>gb|AF065904.1|AF065904 Mus musculus strain C57BL/6J basic fibroblast growth factor (Fgf2) mRNA, complete cds Length = 465 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 57 ggcggcgccgccgtcctccg 38
>gb|AF065903.1|AF065903 Mus musculus strain A/J basic fibroblast growth factor (Fgf2) mRNA, complete cds Length = 465 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 57 ggcggcgccgccgtcctccg 38
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tgtctagcttctgtagtaca 85 |||||||||||||||||||| Sbjct: 549132 tgtctagcttctgtagtaca 549151
>emb|AL662862.16| Mouse DNA sequence from clone CT7-139P23 on chromosome 3, complete sequence Length = 120808 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 45800 ggcggcgccgccgtcctccg 45781
>gb|M30644.1|MUSFGFD Mouse basic fibroblast growth factor (Fgfb) mRNA, complete cds Length = 465 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 57 ggcggcgccgccgtcctccg 38
>emb|AL691478.5| Mouse DNA sequence from clone RP23-137F6 on chromosome 3, complete sequence Length = 120928 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggcgccgccgtcctccg 308 |||||||||||||||||||| Sbjct: 107032 ggcggcgccgccgtcctccg 107013 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,106,399 Number of Sequences: 3902068 Number of extensions: 3106399 Number of successful extensions: 64513 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64068 Number of HSP's gapped (non-prelim): 445 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)