ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet19h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB189641.1| Halorhodospira halophila nifH, nifD, nifK genes ... 40 1.4
2gb|AC084243.7| Homo sapiens chromosome 11, clone CTD-3224I3, com... 38 5.4
3emb|AL929456.11| Mouse DNA sequence from clone RP23-26K1 on chro... 38 5.4

>dbj|AB189641.1| Halorhodospira halophila nifH, nifD, nifK genes for Fe protein of
           nitrogenase, MoFe protein of nitrogenase alpha-subunit,
           MoFe protein of nitrogenase beta-subunit, complete and
           partial cds
          Length = 2957

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   accaccacgcagaacctggt 21
           ||||||||||||||||||||
Sbjct: 261 accaccacgcagaacctggt 280



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>gb|AC084243.7| Homo sapiens chromosome 11, clone CTD-3224I3, complete sequence
          Length = 154201

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    ggtggctgccgagagtgag 81
             |||||||||||||||||||
Sbjct: 11259 ggtggctgccgagagtgag 11241



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>emb|AL929456.11| Mouse DNA sequence from clone RP23-26K1 on chromosome 4, complete
            sequence
          Length = 59271

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 60   gctggtggctgccgagagt 78
            |||||||||||||||||||
Sbjct: 2921 gctggtggctgccgagagt 2939


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 482,189
Number of Sequences: 3902068
Number of extensions: 482189
Number of successful extensions: 29845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29841
Number of HSP's gapped (non-prelim): 4
length of query: 117
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 96
effective length of database: 17,151,101,840
effective search space: 1646505776640
effective search space used: 1646505776640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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