>TERT_CANFA (Q6A548) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit)
          Length = 1123

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 23/75 (30%), Positives = 30/75 (40%)
 Frame = -3

Query: 271 AHRATAARPTTQMSAQSRAARMTTTSELTPAGGSAGGIPGMRPGSPLWRRRLEEYGDGRS 92
           AHR+    P  Q    S A  +T     +PA    GG PG RP +P W      Y   + 
Sbjct: 250 AHRSF---PRAQQPPVSEAPAVTPAVAASPAASWEGGPPGTRPTTPAW----HPYPGPQG 302

Query: 91  IAHVRPAPVVGRGLF 47
           + H    P   R L+
Sbjct: 303 VPHDPAHPETKRFLY 317

>NFAC3_MOUSE (P97305) Nuclear factor of activated T-cells, cytoplasmic 3|
           (NF-ATc3) (NFATc3) (T cell transcription factor NFAT4)
           (NF-AT4) (NFATx)
          Length = 1075

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -3

Query: 217 AARMTTTSELTPAGGSAGGIPGMRPGSPLWRRRLEEYGDGRSIA 86
           AAR T  S LT  GGS GG     PG   W    ++YG G S++
Sbjct: 200 AARFTLGSPLTSPGGSPGGC----PGEESWH---QQYGSGHSLS 236

>NFAC3_HUMAN (Q12968) Nuclear factor of activated T-cells, cytoplasmic 3|
           (NF-ATc3) (NFATc3) (T cell transcription factor NFAT4)
           (NF-AT4) (NFATx)
          Length = 1075

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -3

Query: 217 AARMTTTSELTPAGGSAGGIPGMRPGSPLWRRRLEEYGDGRSIA 86
           AAR T  S LT  GGS GG     PG   W    ++YG G S++
Sbjct: 200 AARFTLGSPLTSPGGSPGGC----PGEETWH---QQYGLGHSLS 236

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 271  AHRATAARP-TTQMSAQSRAARMTTTSELTPAGGSAGGIPGMRPGSP 134
            A +A++++P   +   Q RA +  TT    PAG   G  PG  PG+P
Sbjct: 3853 AEQASSSKPPAAKAPQQGRAPQAQTTPGPGPAGAKPGARPGGTPGAP 3899

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 271  AHRATAARPTTQMSAQSRAARMTTTSELTPAGGSAGGIPGMRPGSP 134
            A +   ++ T +   Q RA +   T    PAG  AG  PG  PG+P
Sbjct: 3838 AEQTNGSKGTAKAPQQGRAPQAQPTPGPGPAGVKAGARPGGTPGAP 3883

>UVRB_XANOR (Q5GXX4) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 688

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 137 AALEETPRGIRRWPEHRPRSSSAGGWKGPFPLN*SCGETRE 15
           +AL+  P     W    PRS       GP+ L  S GE  E
Sbjct: 385 SALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTE 425

>RAD52_NEUCR (Q9HGI2) DNA repair and recombination protein mus-11 (RAD52|
           homolog)
          Length = 600

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
 Frame = -3

Query: 256 AARPTTQMSAQSRAARMTTTSELTPAGGSAG------------------GIPGMR--PGS 137
           A+RP T   A+S +   +      P GG+AG                  G PGM     S
Sbjct: 449 ASRPVTMNEARSASGSFSRAGP--PMGGNAGNMGKPNVVNPQLDHTRRIGAPGMSGFSSS 506

Query: 136 PLWRRRLEEYGDGRSIAHVRPAPVVGRG 53
           P   R     G  R +   RPAPVVG G
Sbjct: 507 PSTNR-----GQYRPLTMKRPAPVVGGG 529

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 271  AHRATAARPTTQMSAQSRAARMTTTSELTPAGGSAGGIPGMRPGSP 134
            A +A +++P  +   Q RA +    S   PAG   G  PG  PG+P
Sbjct: 3852 AEQAGSSKPAAKAPQQGRAPQ--AQSAPGPAGAKTGARPGGTPGAP 3895

>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane|
           protein)
          Length = 2038

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -3

Query: 244 TTQMSAQSRAARMTTTSELTPAGGSAGGIPGMRPGSPLWRRRLEEYGDGRSIAHVRPAPV 65
           +T++S  + +A+ +     T AGG +   PG +PGS          G G +IA  RP   
Sbjct: 193 STKVSVAASSAQQSGLQGATGAGGGSSSTPGTQPGS----------GAGGAIA-ARPVSA 241

Query: 64  VG 59
           +G
Sbjct: 242 MG 243

>SYFB_RALEJ (Q472N3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 815

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +1

Query: 49  KGPFQPPALDERGRCSGHRRIPRGVSSRAATPA 147
           K P +  A D  GR SG  R+ RGV++RAATPA
Sbjct: 209 KLPVKVSAPDLCGRFSG--RVIRGVNARAATPA 239

>UVRB_XANCP (Q8P7X1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 673

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 137 AALEETPRGIRRWPEHRPRSSSAGGWKGPFPLN*SCGETRE 15
           +AL+  P     W    PRS       GP+ L  S GE  E
Sbjct: 370 SALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITE 410

>UVRB_XANC8 (Q4UW79) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 673

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 137 AALEETPRGIRRWPEHRPRSSSAGGWKGPFPLN*SCGETRE 15
           +AL+  P     W    PRS       GP+ L  S GE  E
Sbjct: 370 SALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITE 410

>ARCA_PROAC (Q6AA78) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine|
           dihydrolase) (AD)
          Length = 414

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 187 TPAGGSAGGIPGMRP---GSPLWRRRLEEYGDGRSIAHVRPAPVVG 59
           T    S+ G+ G+R    G   W  + E++ DG ++  + P  VVG
Sbjct: 322 TDVVASSLGLDGLRTVETGGDCWEAQREQWDDGNNVVALEPGVVVG 367

>CCG8_RAT (Q8VHW5) Voltage-dependent calcium channel gamma-8 subunit|
           (Neuronal voltage-gated calcium channel gamma-8 subunit)
          Length = 421

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = -3

Query: 226 QSRAARMTTTSELTPAGGSAGGIPGMRPGSPL--------WRRRLEEYGDGRSIA 86
           +SR A   + S+L  AGG AGG  G  P + L        +RRR      G S A
Sbjct: 229 RSREAHCQSRSDLLKAGGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRGSSEA 283

>CCG8_MOUSE (Q8VHW2) Voltage-dependent calcium channel gamma-8 subunit|
           (Neuronal voltage-gated calcium channel gamma-8 subunit)
          Length = 423

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = -3

Query: 226 QSRAARMTTTSELTPAGGSAGGIPGMRPGSPL--------WRRRLEEYGDGRSIA 86
           +SR A   + S+L  AGG AGG  G  P + L        +RRR      G S A
Sbjct: 229 RSREAHCQSRSDLLKAGGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRGSSEA 283

>UVRB_XANAC (Q8PJB1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 673

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 137 AALEETPRGIRRWPEHRPRSSSAGGWKGPFPLN*SCGETRE 15
           +AL+  P     W    PRS       GP+ +  S GE  E
Sbjct: 370 SALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTE 410

>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)|
           (Scaffold attachment factor A) (SAF-A) (p120) (pp120)
          Length = 824

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -3

Query: 181 AGG---SAGGIPGMRPGSPLWRRRLEEYGDGRSIAHVRPAPVVGRGLFR*IK 35
           AGG   + GG  G RPG+P    + E+ G  +     RP    GRG F  I+
Sbjct: 210 AGGKKKAEGGGGGGRPGAPAGDGKTEQKGGDKKRGVKRPREDHGRGYFEYIE 261

>Y579_CHLTR (O84583) Protein CT_579|
          Length = 439

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 262 ATAARPTTQMSAQSRAARMTTTSELTPAGGSAGGIPGMRPGSPLWRRRLEEYGDGRSIAH 83
           ++AA   TQ  A+S +  ++ T     A  SAGG+ G    +P W  ++    +      
Sbjct: 280 SSAATKLTQNMAESASKTLSQT-----ASKSAGGLFGQALNTPSWSEKVSRGMNVVKTQG 334

Query: 82  VRPAPVVGRGL 50
            R A   GR L
Sbjct: 335 TRAAKFAGRAL 345

>LTB1L_HUMAN (Q14766) Latent transforming growth factor beta-binding protein,|
           isoform 1L precursor (LTBP-1) (Transforming growth
           factor beta-1-binding protein 1) (TGF-beta1-BP-1)
          Length = 1595

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = -3

Query: 262 ATAARPTTQMSAQSRAARMTTTSELTPAGGSAGGIPGMRPGSPLWRRRLEEYGDGRSIAH 83
           A  A P +   A SR   +   +  + +  +AG      PG P  R R      G ++  
Sbjct: 39  AAGALPLSGPPASSRTFNVALNARYSRSSAAAGAPSRASPGVPSERTRRTSKPGGAALQG 98

Query: 82  VRPAP 68
           +RP P
Sbjct: 99  LRPPP 103

>CCG8_HUMAN (Q8WXS5) Voltage-dependent calcium channel gamma-8 subunit|
           (Neuronal voltage-gated calcium channel gamma-8 subunit)
          Length = 425

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 226 QSRAARMTTTSELTPAGGSAGGIPGMRPGSPLWRRRLEEY 107
           +SR A   + S+L  AGG AGG  G  P + L   RL  Y
Sbjct: 230 RSREAHCQSRSDLLKAGGGAGGSGGSGPSAIL---RLPSY 266

>ALF_STRCO (Q9X8R6) Fructose-bisphosphate aldolase (EC 4.1.2.13)|
          Length = 343

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 238 QMSAQSRAARMTTTSELTPAGGSAGGI 158
           ++ A++RAAR+    E+TP GG   G+
Sbjct: 146 ELLARARAARIILEVEITPTGGEEDGV 172

>Y2083_MYCTU (Q10691) Hypothetical protein Rv2083/MT2145|
          Length = 314

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -3

Query: 259 TAARPTTQMSAQSRAARMTTTSELTPAGG--SAGGIPGMRPGSPLWRRRLEEYGDGRSIA 86
           T++ PTT   A +++A M      +PA     A G+P + PG+     R E  G  + + 
Sbjct: 196 TSSPPTTPAGAPTKSATMPPPGGASPASAHMGAAGMPMVPPGA--MGARGEGSGQEKPVE 253

Query: 85  HVRPAPVVGRG 53
               AP V  G
Sbjct: 254 KRLTAPAVPNG 264


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,725,168
Number of Sequences: 219361
Number of extensions: 504583
Number of successful extensions: 2894
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)