ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet19e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCR2_YEAST (Q05924) Phosphatase DCR2 (EC 3.1.-.-) (Dosage-depend... 72 5e-13
2SIA1_YEAST (Q12212) Protein SIA1 precursor 54 2e-07
3SIA1_KLULA (Q6CPQ2) Protein SIA1 precursor 36 0.050
4Y291_METJA (Q57739) Probable signal recognition particle protein... 29 4.7

>DCR2_YEAST (Q05924) Phosphatase DCR2 (EC 3.1.-.-) (Dosage-dependent cell cycle|
           regulator 2)
          Length = 578

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
 Frame = +3

Query: 153 EDGTFKVLQVADMHYADGLSTPCEDVLPEQVPGCSDLNTTAFLYRLLRAEEPDLVVFTGD 332
           ++G FK++Q+AD+H   G S  C D  P+     +D  T  F+ ++L  E+P LVVFTGD
Sbjct: 244 DEGKFKIVQLADLHLGVGESE-CIDEYPKHEACKADPKTETFVQQVLDIEKPQLVVFTGD 302

Query: 333 NIFGN-XXXXXXXXXXXXXXPAIAMKLPWAAVLGYHDQEG 449
            I G+               P IA K+PWA V G HD EG
Sbjct: 303 QIMGDRSIQDSETVLLKAVAPVIARKIPWAMVWGNHDDEG 342



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>SIA1_YEAST (Q12212) Protein SIA1 precursor|
          Length = 622

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 31/102 (30%), Positives = 50/102 (49%)
 Frame = +3

Query: 138 LRFRREDGTFKVLQVADMHYADGLSTPCEDVLPEQVPGCSDLNTTAFLYRLLRAEEPDLV 317
           ++F R   +FK+LQ+ D H+       C D     +   +++ T  F+ R+L +E PDLV
Sbjct: 301 IQFSRGQRSFKILQITDFHFK------CTD---NSMTVINEIKTVNFIDRVLASENPDLV 351

Query: 318 VFTGDNIFGNXXXXXXXXXXXXXXPAIAMKLPWAAVLGYHDQ 443
           V TGD +  +              P I+ K+P+A  LG  D+
Sbjct: 352 VITGDLLDSHNTIDYQTCIMKVVQPMISNKIPYAISLGVSDE 393



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>SIA1_KLULA (Q6CPQ2) Protein SIA1 precursor|
          Length = 578

 Score = 35.8 bits (81), Expect = 0.050
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 165 FKVLQVADMHYADGLSTPCEDVLPEQVPGCSDLNTTAFLYRLLRAEEPDLVVFTG 329
           FK+LQ++D+H+   + +      P+ +    D     F++ ++R E PDL V TG
Sbjct: 278 FKILQISDLHFGRHIVSDSRKEKPDSI-FRYDWPNVQFIHSVIRNERPDLAVITG 331



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>Y291_METJA (Q57739) Probable signal recognition particle protein MJ0291|
          Length = 409

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 255 SDLNTTAFLYRLLRAEEPDLVVFTGDNIFGN 347
           +++N    + +++R  +PDLV+F GD + GN
Sbjct: 298 TNVNLMEEIKKVVRVTKPDLVIFVGDALTGN 328


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,504,882
Number of Sequences: 219361
Number of extensions: 662481
Number of successful extensions: 2483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2480
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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