>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 250     tgccgttggcggcgtcgccggc 271
               ||||||||||||||||||||||
Sbjct: 4638267 tgccgttggcggcgtcgccggc 4638246

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 58      tggcacgccgtcgagcggcacgccctcgg 86
               ||||| ||||||||||||| |||||||||
Sbjct: 1763519 tggcaggccgtcgagcggcgcgccctcgg 1763491

>ref|XM_862060.1| PREDICTED: Canis familiaris hypothetical protein LOC610656
           (LOC610656), mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 cgccgccccgaccgcgggcgg 207
           |||||||||||||||||||||
Sbjct: 306 cgccgccccgaccgcgggcgg 286

>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 251    gccgttggcggcgtcgccggcaaag 275
              |||| ||||||||||||||||||||
Sbjct: 956052 gccggtggcggcgtcgccggcaaag 956076

>gb|U31090.1|RSU31090 Rhodobacter sphaeroides FliH (fliH) gene, partial cds, FliI (fliI)
           and FliJ (fliJ) genes, complete cds
          Length = 2190

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 58  tggcacgccgtcgagcggcacgccctcgg 86
           ||||| ||||||||||||| |||||||||
Sbjct: 806 tggcaggccgtcgagcggcgcgccctcgg 778

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 250     tgccgttggcggcgtcgccggcaa 273
               ||||||||||||| ||||||||||
Sbjct: 3046817 tgccgttggcggcctcgccggcaa 3046840

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      gccgtcgagcggcacgccct 83
               ||||||||||||||||||||
Sbjct: 2793585 gccgtcgagcggcacgccct 2793604

>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 187    cgccgccccgaccgcgggcggcgccgtc 214
              |||||||| ||||||||||| |||||||
Sbjct: 940516 cgccgcccagaccgcgggcgacgccgtc 940543

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      cctcgggcggcggcatcagc 100
               ||||||||||||||||||||
Sbjct: 1928034 cctcgggcggcggcatcagc 1928015

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    cccggtcatcggcgtcgtcg 125
              ||||||||||||||||||||
Sbjct: 625982 cccggtcatcggcgtcgtcg 626001

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      gccgtcgagcggcacgccct 83
               ||||||||||||||||||||
Sbjct: 4021080 gccgtcgagcggcacgccct 4021099

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 300    tcggcaccgtcggcggcgtggccg 323
              |||| |||||||||||||||||||
Sbjct: 629558 tcgggaccgtcggcggcgtggccg 629581

>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    ctccggtcatcggcgtcgtc 157
              ||||||||||||||||||||
Sbjct: 101127 ctccggtcatcggcgtcgtc 101108

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     ccggtcatcggcgtcgtcgg 126
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     ccggtcatcggcgtcgtcgg 159
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042

>emb|X97201.1|RSFLIIGEN R.sphaeroides fliI gene
          Length = 1341

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 59  ggcacgccgtcgagcggcacgccctcgg 86
           |||| ||||||||||||| |||||||||
Sbjct: 365 ggcaggccgtcgagcggcgcgccctcgg 338

>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    ccgtcggcggcgtggccggc 325
              ||||||||||||||||||||
Sbjct: 125160 ccgtcggcggcgtggccggc 125179

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      gccgtcgagcggcacgccct 83
               ||||||||||||||||||||
Sbjct: 3727689 gccgtcgagcggcacgccct 3727708

>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    cccgaccgcgggcggcgccg 212
              ||||||||||||||||||||
Sbjct: 137812 cccgaccgcgggcggcgccg 137831

>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 311    ggcggcgtggccggcaaagtcacccccg 338
              ||||||||||||||||| |||| |||||
Sbjct: 217166 ggcggcgtggccggcaacgtcatccccg 217193

>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ccgcgggcggcgccgtcggc 217
             ||||||||||||||||||||
Sbjct: 97466 ccgcgggcggcgccgtcggc 97447

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     ggcggcgccgtcggcaaggt 222
               ||||||||||||||||||||
Sbjct: 2558919 ggcggcgccgtcggcaaggt 2558900

>gb|DQ060507.1| Nelumbo nucifera polyphenol oxidase 4-like mRNA, partial sequence
          Length = 1004

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 tggccggcaaagtcacccccgccg 341
           ||||||||||||||| ||||||||
Sbjct: 133 tggccggcaaagtcatccccgccg 110

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 138      ctccggtcatcggcgtcgtc 157
                ||||||||||||||||||||
Sbjct: 22841410 ctccggtcatcggcgtcgtc 22841391

>gb|AF222753.1|AF222753 Bradyrhizobium sp. WM9 nodulation region 1
          Length = 33038

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 250  tgccgttggcggcgtcgccggcaa 273
            ||||||| ||||||||||||||||
Sbjct: 3869 tgccgttcgcggcgtcgccggcaa 3892

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 76      cacgccctcgggcggcggca 95
               ||||||||||||||||||||
Sbjct: 7955812 cacgccctcgggcggcggca 7955831

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 250     tgccgttggcggcgtcgccggcaa 273
               |||||| |||||||||||||||||
Sbjct: 3391888 tgccgtgggcggcgtcgccggcaa 3391865

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     ggtcggcaccgtcggcggcg 317
               ||||||||||||||||||||
Sbjct: 4635525 ggtcggcaccgtcggcggcg 4635544

>dbj|AK062389.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-C07, full
           insert sequence
          Length = 745

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 115 cggcgtcgtcggtggcaccgtcactccg 142
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 148 cggcgtcgtcggtggcaccgtcactccg 175
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      gccgtcgagcggcacgccct 83
               ||||||||||||||||||||
Sbjct: 3420385 gccgtcgagcggcacgccct 3420404

>dbj|D13252.1|SMAASPA Serratia marcescens aspA gene for aspartase, complete cds
          Length = 2867

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 tgccgttggcggcgtcgccg 269
           ||||||||||||||||||||
Sbjct: 21  tgccgttggcggcgtcgccg 40

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 138      ctccggtcatcggcgtcgtc 157
                ||||||||||||||||||||
Sbjct: 23151320 ctccggtcatcggcgtcgtc 23151301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,056,851
Number of Sequences: 3902068
Number of extensions: 2056851
Number of successful extensions: 48975
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45976
Number of HSP's gapped (non-prelim): 2999
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)