ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet18g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478951.1| Oryza sativa (japonica cultivar-group), mRNA 121 2e-24
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
3dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
4dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5ref|XM_468855.1| Oryza sativa (japonica cultivar-group), mRNA 74 3e-10
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 3e-10
7gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genom... 74 3e-10
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
9dbj|AK108264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
10gb|AY665389.1| Drosophila pseudoobscura CG4928 mRNA, partial cds 46 0.075
11ref|NM_172571.2| Mus musculus Fas (TNFRSF6) binding factor 1 (Fb... 44 0.30
12gb|BC055689.1| Mus musculus Fas (TNFRSF6) binding factor 1, mRNA... 44 0.30
13gb|BC043126.1| Mus musculus Fas (TNFRSF6) binding factor 1, mRNA... 44 0.30
14gb|BC023875.1| Mus musculus Fas (TNFRSF6) binding factor 1, mRNA... 44 0.30
15dbj|AK031140.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 44 0.30
16dbj|AK004058.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 44 0.30
17gb|AF241249.1|AF241249 Mus musculus structural protein FBF1 (Fbf... 44 0.30
18gb|BC092220.1| Mus musculus cDNA clone IMAGE:6822567, with appar... 44 0.30
19emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chro... 44 0.30
20ref|XM_513432.1| PREDICTED: Pan troglodytes similar to Probable ... 42 1.2
21gb|DQ338462.1| Nephila antipodiana clone 145 minor ampullate fib... 42 1.2
22ref|XM_864204.1| PREDICTED: Bos taurus similar to Exportin-4 (Ex... 42 1.2
23ref|NG_005144.2| Homo sapiens inosine monophosphate dehydrogenas... 42 1.2
24ref|XM_978725.1| PREDICTED: Mus musculus ubiquitin specific pept... 42 1.2
25ref|XM_131566.9| PREDICTED: Mus musculus ubiquitin specific pept... 42 1.2
26ref|XM_915524.2| PREDICTED: Mus musculus ubiquitin specific pept... 42 1.2
27ref|XM_536697.2| PREDICTED: Canis familiaris similar to Ubiquiti... 42 1.2
28gb|AY369780.1| Rattus norvegicus BIM gene, promoter region and p... 42 1.2
29gb|AC025593.6| Homo sapiens chromosome 7 clone RP11-18L16, compl... 42 1.2
30emb|CR857421.1| Pongo pygmaeus mRNA; cDNA DKFZp469K1724 (from cl... 42 1.2
31dbj|AK127075.1| Homo sapiens cDNA FLJ45132 fis, clone BRAWH30379... 42 1.2
32dbj|AB205016.1| Lolium multiflorum gene for replacement histone ... 42 1.2
33ref|XM_942521.1| PREDICTED: Homo sapiens ubiquitin specific pept... 42 1.2
34ref|XM_371254.4| PREDICTED: Homo sapiens ubiquitin specific pept... 42 1.2
35gb|AC161470.3| Gallus gallus BAC clone CH261-85J8 from chromosom... 42 1.2
36gb|AC091609.2| Homo sapiens chromosome 1 clone RP11-109I2, compl... 42 1.2
37gb|AC116667.2| Homo sapiens chromosome 16 clone RP11-346C20, com... 42 1.2
38gb|AC008265.15|AC008265 Homo sapiens chromosome 7 clone RP11-256... 42 1.2
39dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.2
40gb|AC146130.4| Pan troglodytes BAC clone RP43-4F10 from chromoso... 42 1.2
41emb|AL840623.10| Mouse DNA sequence from clone RP23-289L17 on ch... 42 1.2
42gb|AC008337.8| Drosophila melanogaster clone BACR02B03, complete... 40 4.6
43gb|AC012376.12| Drosophila melanogaster clone BACR48C12, complet... 40 4.6
44ref|XM_413869.1| PREDICTED: Gallus gallus similar to hypothetica... 40 4.6
45ref|XM_775717.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.6
46ref|XM_965281.1| PREDICTED: Tribolium castaneum similar to ZK112... 40 4.6
47emb|AJ007699.1|PPU007699 Pseudomonas putida ORF284, ptsO gene & ... 40 4.6
48emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chr... 40 4.6
49gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete... 40 4.6
50dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 4.6
51ref|NM_133145.2| Drosophila melanogaster CG8010-RA (CG8010), mRNA 40 4.6
52gb|AY058559.1| Drosophila melanogaster LD24910 full length cDNA 40 4.6
53emb|AJ414733.1|LUS414733 Linum usitatissimum mRNA for conlinin (... 40 4.6
54dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
55dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
56gb|AE004520.1| Pseudomonas aeruginosa PAO1, section 81 of 529 of... 40 4.6
57gb|AC114290.2| Homo sapiens chromosome 5 clone CTD-3062C19, comp... 40 4.6
58emb|BX323031.7| Zebrafish DNA sequence from clone DKEYP-7B3 in l... 40 4.6
59dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
60gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 ... 40 4.6
61gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 4.6
62gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 4.6
63gb|L36878.1|CHKD1LRA Gallus domesticus D1-like receptor DNA frag... 40 4.6
64gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6 
>ref|XM_478951.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 882

 Score =  121 bits (61), Expect = 2e-24
 Identities = 100/113 (88%)
 Strand = Plus / Plus

                                                                       
Query: 238 ccgcggtccgagtccgtcgcgtccaccgcgggctttggctcgcgctccgactgccggagc 297
           |||||||| ||||| || |||||||||| ||| || |||||||| |||||| ||||||||
Sbjct: 250 ccgcggtcggagtcggtggcgtccaccgtggggttcggctcgcggtccgacagccggagc 309

                                                                
Query: 298 gccagctccagcggcagcagcagtggctgcgtcagccgcagccactcgtccaa 350
           || |||||||||||||||||||| |||||||||||||| ||| | ||||||||
Sbjct: 310 gcgagctccagcggcagcagcagcggctgcgtcagccggagcgagtcgtccaa 362



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 154 gcgggcgacatgtgcgtggcggacgagctcttctccca 191
           |||| ||||||||||||||| |||||| | ||||||||
Sbjct: 145 gcggccgacatgtgcgtggccgacgaggtgttctccca 182
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  121 bits (61), Expect = 2e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                            
Query: 238      ccgcggtccgagtccgtcgcgtccaccgcgggctttggctcgcgctccgactgccggagc 297
                |||||||| ||||| || |||||||||| ||| || |||||||| |||||| ||||||||
Sbjct: 23981994 ccgcggtcggagtcggtggcgtccaccgtggggttcggctcgcggtccgacagccggagc 23981935

                                                                     
Query: 298      gccagctccagcggcagcagcagtggctgcgtcagccgcagccactcgtccaa 350
                || |||||||||||||||||||| |||||||||||||| ||| | ||||||||
Sbjct: 23981934 gcgagctccagcggcagcagcagcggctgcgtcagccggagcgagtcgtccaa 23981882



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 154      gcgggcgacatgtgcgtggcggacgagctcttctccca 191
                |||| ||||||||||||||| |||||| | ||||||||
Sbjct: 23982099 gcggccgacatgtgcgtggccgacgaggtgttctccca 23982062
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>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0005G07
          Length = 142850

 Score =  121 bits (61), Expect = 2e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                          
Query: 238    ccgcggtccgagtccgtcgcgtccaccgcgggctttggctcgcgctccgactgccggagc 297
              |||||||| ||||| || |||||||||| ||| || |||||||| |||||| ||||||||
Sbjct: 136921 ccgcggtcggagtcggtggcgtccaccgtggggttcggctcgcggtccgacagccggagc 136862

                                                                   
Query: 298    gccagctccagcggcagcagcagtggctgcgtcagccgcagccactcgtccaa 350
              || |||||||||||||||||||| |||||||||||||| ||| | ||||||||
Sbjct: 136861 gcgagctccagcggcagcagcagcggctgcgtcagccggagcgagtcgtccaa 136809



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 154    gcgggcgacatgtgcgtggcggacgagctcttctccca 191
              |||| ||||||||||||||| |||||| | ||||||||
Sbjct: 137026 gcggccgacatgtgcgtggccgacgaggtgttctccca 136989
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>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1174_G05
          Length = 111202

 Score =  121 bits (61), Expect = 2e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                         
Query: 238   ccgcggtccgagtccgtcgcgtccaccgcgggctttggctcgcgctccgactgccggagc 297
             |||||||| ||||| || |||||||||| ||| || |||||||| |||||| ||||||||
Sbjct: 23602 ccgcggtcggagtcggtggcgtccaccgtggggttcggctcgcggtccgacagccggagc 23543

                                                                  
Query: 298   gccagctccagcggcagcagcagtggctgcgtcagccgcagccactcgtccaa 350
             || |||||||||||||||||||| |||||||||||||| ||| | ||||||||
Sbjct: 23542 gcgagctccagcggcagcagcagcggctgcgtcagccggagcgagtcgtccaa 23490



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 154   gcgggcgacatgtgcgtggcggacgagctcttctccca 191
             |||| ||||||||||||||| |||||| | ||||||||
Sbjct: 23707 gcggccgacatgtgcgtggccgacgaggtgttctccca 23670
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>ref|XM_468855.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 963

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 275 gctcgcgctccgactgccggagcgccagctccagcggcagcagcagtggctgcgtcagcc 334
           |||||||||||||| |||||||||| ||||| ||| ||||||||||  ||||||||||||
Sbjct: 299 gctcgcgctccgacagccggagcgcgagctcgagcagcagcagcagcagctgcgtcagcc 358

            
Query: 335 g 335
           |
Sbjct: 359 g 359
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 275      gctcgcgctccgactgccggagcgccagctccagcggcagcagcagtggctgcgtcagcc 334
                |||||||||||||| |||||||||| ||||| ||| ||||||||||  ||||||||||||
Sbjct: 18351241 gctcgcgctccgacagccggagcgcgagctcgagcagcagcagcagcagctgcgtcagcc 18351300

                 
Query: 335      g 335
                |
Sbjct: 18351301 g 18351301
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>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete
              sequence
          Length = 159579

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                          
Query: 275    gctcgcgctccgactgccggagcgccagctccagcggcagcagcagtggctgcgtcagcc 334
              |||||||||||||| |||||||||| ||||| ||| ||||||||||  ||||||||||||
Sbjct: 117672 gctcgcgctccgacagccggagcgcgagctcgagcagcagcagcagcagctgcgtcagcc 117731

               
Query: 335    g 335
              |
Sbjct: 117732 g 117732
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 275      gctcgcgctccgactgccggagcgccagctccagcggcagcagcagtggctgcgtcagcc 334
                |||||||||||||| |||||||||| ||||| ||| ||||||||||  ||||||||||||
Sbjct: 18345282 gctcgcgctccgacagccggagcgcgagctcgagcagcagcagcagcagctgcgtcagcc 18345341

                 
Query: 335      g 335
                |
Sbjct: 18345342 g 18345342
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>dbj|AK108264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B08, full
           insert sequence
          Length = 991

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 275 gctcgcgctccgactgccggagcgccagctccagcggcagcagcagtggctgcgtcagcc 334
           |||||||||||||| |||||||||| ||||| ||| ||||||||||  ||||||||||||
Sbjct: 284 gctcgcgctccgacagccggagcgcgagctcgagcagcagcagcagcagctgcgtcagcc 343

            
Query: 335 g 335
           |
Sbjct: 344 g 344
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>gb|AY665389.1| Drosophila pseudoobscura CG4928 mRNA, partial cds
          Length = 1542

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 309  cggcagcagcagtggctgcgtcagccgcagc 339
            ||||||||||| |||||||| ||||||||||
Sbjct: 1507 cggcagcagcaatggctgcggcagccgcagc 1477
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>ref|NM_172571.2| Mus musculus Fas (TNFRSF6) binding factor 1 (Fbf1), mRNA
          Length = 4670

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 304  tccagcggcagcagcagtggctgcgtcagc 333
            |||||||||||||| |||||||||| ||||
Sbjct: 3198 tccagcggcagcaggagtggctgcggcagc 3227
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>gb|BC055689.1| Mus musculus Fas (TNFRSF6) binding factor 1, mRNA (cDNA clone
            IMAGE:6404231), complete cds
          Length = 2580

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 304  tccagcggcagcagcagtggctgcgtcagc 333
            |||||||||||||| |||||||||| ||||
Sbjct: 1080 tccagcggcagcaggagtggctgcggcagc 1109
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>gb|BC043126.1| Mus musculus Fas (TNFRSF6) binding factor 1, mRNA (cDNA clone
            IMAGE:6410155)
          Length = 5254

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 304  tccagcggcagcagcagtggctgcgtcagc 333
            |||||||||||||| |||||||||| ||||
Sbjct: 3764 tccagcggcagcaggagtggctgcggcagc 3793
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>gb|BC023875.1| Mus musculus Fas (TNFRSF6) binding factor 1, mRNA (cDNA clone
            IMAGE:5355009)
          Length = 3421

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 304  tccagcggcagcagcagtggctgcgtcagc 333
            |||||||||||||| |||||||||| ||||
Sbjct: 982  tccagcggcagcaggagtggctgcggcagc 1011
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>dbj|AK031140.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched
            library, clone:5930413D20 product:inferred: structural
            protein FBF1 {Mus musculus}, full insert sequence
          Length = 1993

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 304  tccagcggcagcagcagtggctgcgtcagc 333
            |||||||||||||| |||||||||| ||||
Sbjct: 1491 tccagcggcagcaggagtggctgcggcagc 1520
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>dbj|AK004058.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1110033G01 product:RIKEN cDNA
           1110033G01 gene, full insert sequence
          Length = 1632

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 304 tccagcggcagcagcagtggctgcgtcagc 333
           |||||||||||||| |||||||||| ||||
Sbjct: 173 tccagcggcagcaggagtggctgcggcagc 202
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>gb|AF241249.1|AF241249 Mus musculus structural protein FBF1 (Fbf1) mRNA, complete cds
          Length = 4670

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 304  tccagcggcagcagcagtggctgcgtcagc 333
            |||||||||||||| |||||||||| ||||
Sbjct: 3198 tccagcggcagcaggagtggctgcggcagc 3227
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>gb|BC092220.1| Mus musculus cDNA clone IMAGE:6822567, with apparent retained intron
          Length = 5364

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 304  tccagcggcagcagcagtggctgcgtcagc 333
            |||||||||||||| |||||||||| ||||
Sbjct: 3874 tccagcggcagcaggagtggctgcggcagc 3903
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>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete
              sequence
          Length = 202842

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 304    tccagcggcagcagcagtggctgcgtcagc 333
              |||||||||||||| |||||||||| ||||
Sbjct: 162029 tccagcggcagcaggagtggctgcggcagc 162000
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>ref|XM_513432.1| PREDICTED: Pan troglodytes similar to Probable ubiquitin
            carboxyl-terminal hydrolase FAF-X (Ubiquitin
            thiolesterase FAF-X) (Ubiquitin-specific processing
            protease FAF-X) (Deubiquitinating enzyme FAF-X) (Fat
            facets protein related, X-linked) (Ubiquitin-specific
            protease 9, X ... (LOC456882), mRNA
          Length = 3546

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 299  ccagctccagcggcagcagcagtgg 323
            ||||||||||| |||||||||||||
Sbjct: 2924 ccagctccagcagcagcagcagtgg 2948
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>gb|DQ338462.1| Nephila antipodiana clone 145 minor ampullate fibroin 1 mRNA,
           partial cds
          Length = 1189

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 296 gcgccagctccagcggcagcagcag 320
           |||||||||||||| ||||||||||
Sbjct: 631 gcgccagctccagcagcagcagcag 607
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>ref|XM_864204.1| PREDICTED: Bos taurus similar to Exportin-4 (Exp4), transcript
            variant 3 (LOC506392), mRNA
          Length = 3680

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 300  cagctccagcggcagcagcag 320
            |||||||||||||||||||||
Sbjct: 1530 cagctccagcggcagcagcag 1550
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>ref|NG_005144.2| Homo sapiens inosine monophosphate dehydrogenase 1 pseudogene
           (LOC136307) on chromosome 7
          Length = 2453

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 306 cagcggcagcagcagtggctg 326
           |||||||||||||||||||||
Sbjct: 37  cagcggcagcagcagtggctg 57
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>ref|XM_978725.1| PREDICTED: Mus musculus ubiquitin specific peptidase 24 (Usp24), mRNA
          Length = 9025

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 299  ccagctccagcggcagcagcagtgg 323
            ||||||||||| |||||||||||||
Sbjct: 1820 ccagctccagcagcagcagcagtgg 1844
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>ref|XM_131566.9| PREDICTED: Mus musculus ubiquitin specific peptidase 24, transcript
            variant 1 (Usp24), mRNA
          Length = 9025

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 299  ccagctccagcggcagcagcagtgg 323
            ||||||||||| |||||||||||||
Sbjct: 1820 ccagctccagcagcagcagcagtgg 1844
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>ref|XM_915524.2| PREDICTED: Mus musculus ubiquitin specific peptidase 24, transcript
            variant 5 (Usp24), mRNA
          Length = 10138

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 299  ccagctccagcggcagcagcagtgg 323
            ||||||||||| |||||||||||||
Sbjct: 2933 ccagctccagcagcagcagcagtgg 2957
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>ref|XM_536697.2| PREDICTED: Canis familiaris similar to Ubiquitin carboxyl-terminal
            hydrolase 24 (Ubiquitin thiolesterase 24)
            (Ubiquitin-specific processing protease 24)
            (Deubiquitinating enzyme 24) (LOC479558), mRNA
          Length = 7974

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 299  ccagctccagcggcagcagcagtgg 323
            ||||||||||| |||||||||||||
Sbjct: 2867 ccagctccagcagcagcagcagtgg 2891
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>gb|AY369780.1| Rattus norvegicus BIM gene, promoter region and partial cds
          Length = 5203

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 199  ctcctcccgctccgcccctcg 219
            |||||||||||||||||||||
Sbjct: 4159 ctcctcccgctccgcccctcg 4139
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>gb|AC025593.6| Homo sapiens chromosome 7 clone RP11-18L16, complete sequence
          Length = 184453

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 306   cagcggcagcagcagtggctg 326
             |||||||||||||||||||||
Sbjct: 36368 cagcggcagcagcagtggctg 36348
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>emb|CR857421.1| Pongo pygmaeus mRNA; cDNA DKFZp469K1724 (from clone DKFZp469K1724)
          Length = 3160

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 299 ccagctccagcggcagcagcagtgg 323
           ||||||||||| |||||||||||||
Sbjct: 345 ccagctccagcagcagcagcagtgg 369
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>dbj|AK127075.1| Homo sapiens cDNA FLJ45132 fis, clone BRAWH3037979, highly  similar
            to Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15)
          Length = 4245

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 299  ccagctccagcggcagcagcagtgg 323
            ||||||||||| |||||||||||||
Sbjct: 1144 ccagctccagcagcagcagcagtgg 1168
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>dbj|AB205016.1| Lolium multiflorum gene for replacement histone H3, promoter region
          Length = 2694

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    ctcttcttcttccccttggac 21
            |||||||||||||||||||||
Sbjct: 1869 ctcttcttcttccccttggac 1849
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>ref|XM_942521.1| PREDICTED: Homo sapiens ubiquitin specific peptidase 24, transcript
           variant 5 (USP24), mRNA
          Length = 8082

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 299 ccagctccagcggcagcagcagtgg 323
           ||||||||||| |||||||||||||
Sbjct: 685 ccagctccagcagcagcagcagtgg 709
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>ref|XM_371254.4| PREDICTED: Homo sapiens ubiquitin specific peptidase 24, transcript
           variant 1 (USP24), mRNA
          Length = 8082

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 299 ccagctccagcggcagcagcagtgg 323
           ||||||||||| |||||||||||||
Sbjct: 685 ccagctccagcagcagcagcagtgg 709
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>gb|AC161470.3| Gallus gallus BAC clone CH261-85J8 from chromosome ul, complete sequence
          Length = 213142

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 300    cagctccagcggcagcagcag 320
              |||||||||||||||||||||
Sbjct: 163616 cagctccagcggcagcagcag 163596
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>gb|AC091609.2| Homo sapiens chromosome 1 clone RP11-109I2, complete sequence
          Length = 183521

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 299   ccagctccagcggcagcagcagtgg 323
             ||||||||||| |||||||||||||
Sbjct: 90148 ccagctccagcagcagcagcagtgg 90172
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>gb|AC116667.2| Homo sapiens chromosome 16 clone RP11-346C20, complete sequence
          Length = 156100

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 308    gcggcagcagcagtggctgcg 328
              |||||||||||||||||||||
Sbjct: 150583 gcggcagcagcagtggctgcg 150563
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>gb|AC008265.15|AC008265 Homo sapiens chromosome 7 clone RP11-256C24, complete sequence
          Length = 170537

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 306   cagcggcagcagcagtggctg 326
             |||||||||||||||||||||
Sbjct: 30624 cagcggcagcagcagtggctg 30644
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 135     cggcctcgtatcggccggcgc 155
               |||||||||||||||||||||
Sbjct: 1734870 cggcctcgtatcggccggcgc 1734890



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 325     tgcgtcagccgcagccactcgtcc 348
               ||||||||| ||||||||||||||
Sbjct: 3120843 tgcgtcagcggcagccactcgtcc 3120820
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>gb|AC146130.4| Pan troglodytes BAC clone RP43-4F10 from chromosome 7, complete
             sequence
          Length = 204322

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 194   gcaggctcctcccgctccgcc 214
             |||||||||||||||||||||
Sbjct: 32805 gcaggctcctcccgctccgcc 32825
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>emb|AL840623.10| Mouse DNA sequence from clone RP23-289L17 on chromosome 4, complete
              sequence
          Length = 112610

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 299    ccagctccagcggcagcagcagtgg 323
              ||||||||||| |||||||||||||
Sbjct: 107723 ccagctccagcagcagcagcagtgg 107747
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>gb|AC008337.8| Drosophila melanogaster clone BACR02B03, complete sequence
          Length = 169680

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   ggcggacgagctcttctccc 190
             ||||||||||||||||||||
Sbjct: 58058 ggcggacgagctcttctccc 58039
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>gb|AC012376.12| Drosophila melanogaster clone BACR48C12, complete sequence
          Length = 183048

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   ggcggacgagctcttctccc 190
             ||||||||||||||||||||
Sbjct: 10271 ggcggacgagctcttctccc 10252
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>ref|XM_413869.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ12484
           (LOC415496), mRNA
          Length = 2470

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 300 cagctccagcggcagcagcagtgg 323
           |||||||||| |||||||||||||
Sbjct: 942 cagctccagctgcagcagcagtgg 919
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>ref|XM_775717.1| PREDICTED: Strongylocentrotus purpuratus similar to ubiquitin protein
            ligase E3A isoform 3 (LOC575306), mRNA
          Length = 2834

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    ttcttccccttggaccaagc 26
            ||||||||||||||||||||
Sbjct: 1587 ttcttccccttggaccaagc 1568
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>ref|XM_965281.1| PREDICTED: Tribolium castaneum similar to ZK112.2 (LOC658934), mRNA
          Length = 2448

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 299  ccagctccagcggcagcagc 318
            ||||||||||||||||||||
Sbjct: 1259 ccagctccagcggcagcagc 1278
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>emb|AJ007699.1|PPU007699 Pseudomonas putida ORF284, ptsO gene & ORF96
          Length = 1465

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 298  gccagctccagcggcagcagcagt 321
            |||||| |||||||||||||||||
Sbjct: 1316 gccagccccagcggcagcagcagt 1339
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>emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chromosome 4, complete
              sequence
          Length = 160298

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    cagcggcagcagcagtggct 325
              ||||||||||||||||||||
Sbjct: 133168 cagcggcagcagcagtggct 133187
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>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence
          Length = 127686

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 305   ccagcggcagcagcagtggctgcg 328
             |||||||| |||||||||||||||
Sbjct: 42811 ccagcggcggcagcagtggctgcg 42788
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     cggccggcgcgggcgacatg 165
               ||||||||||||||||||||
Sbjct: 4379496 cggccggcgcgggcgacatg 4379477
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>ref|NM_133145.2| Drosophila melanogaster CG8010-RA (CG8010), mRNA
          Length = 1623

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 ggcggacgagctcttctccc 190
           ||||||||||||||||||||
Sbjct: 252 ggcggacgagctcttctccc 271
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>gb|AY058559.1| Drosophila melanogaster LD24910 full length cDNA
          Length = 1579

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 ggcggacgagctcttctccc 190
           ||||||||||||||||||||
Sbjct: 190 ggcggacgagctcttctccc 209
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>emb|AJ414733.1|LUS414733 Linum usitatissimum mRNA for conlinin (cnl2 gene)
          Length = 648

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 298 gccagctccagcggcagcagcagt 321
           ||||||||||| ||||||||||||
Sbjct: 491 gccagctccaggggcagcagcagt 514
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 9        cttccccttggaccaagcaaagaa 32
                ||||| ||||||||||||||||||
Sbjct: 21195140 cttcctcttggaccaagcaaagaa 21195117
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     cagctccagcggcagcagca 319
               ||||||||||||||||||||
Sbjct: 1194197 cagctccagcggcagcagca 1194178
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>gb|AE004520.1| Pseudomonas aeruginosa PAO1, section 81 of 529 of the complete genome
          Length = 12217

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  agcgccagctccagcggcag 314
            ||||||||||||||||||||
Sbjct: 7033 agcgccagctccagcggcag 7052
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>gb|AC114290.2| Homo sapiens chromosome 5 clone CTD-3062C19, complete sequence
          Length = 76144

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 303   ctccagcggcagcagcagtggctg 326
             |||||| |||||||||||||||||
Sbjct: 13664 ctccagtggcagcagcagtggctg 13687
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>emb|BX323031.7| Zebrafish DNA sequence from clone DKEYP-7B3 in linkage group 18,
            complete sequence
          Length = 164748

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  ccgctccgcccctcgtcttc 224
            ||||||||||||||||||||
Sbjct: 1311 ccgctccgcccctcgtcttc 1292
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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     cttccccttggaccaagcaaagaa 32
             ||||| ||||||||||||||||||
Sbjct: 65897 cttcctcttggaccaagcaaagaa 65874
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>gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 of 74 of the complete
              sequence
          Length = 297969

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    ggcggacgagctcttctccc 190
              ||||||||||||||||||||
Sbjct: 213380 ggcggacgagctcttctccc 213361
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 298     gccagctccagcggcagcagcagt 321
               |||||| |||||||||||||||||
Sbjct: 1092382 gccagccccagcggcagcagcagt 1092359
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 65      cccgcgaggccgccgacagc 84
               ||||||||||||||||||||
Sbjct: 2265622 cccgcgaggccgccgacagc 2265603
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>gb|L36878.1|CHKD1LRA Gallus domesticus D1-like receptor DNA fragment
          Length = 1464

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 ccagcggcagcagcagtggc 324
           ||||||||||||||||||||
Sbjct: 548 ccagcggcagcagcagtggc 529
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>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02,
             complete sequence
          Length = 90509

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cagctccagcggcagcagca 319
             ||||||||||||||||||||
Sbjct: 44483 cagctccagcggcagcagca 44464


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,974,257
Number of Sequences: 3902068
Number of extensions: 2974257
Number of successful extensions: 64188
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63548
Number of HSP's gapped (non-prelim): 640
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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