ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet18d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 53 2e-07
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 48 8e-06
3FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 37 0.014
4AROE_NEIPH (P95400) Shikimate dehydrogenase (EC 1.1.1.25) 32 0.58
5AROE_NEIMU (P95389) Shikimate dehydrogenase (EC 1.1.1.25) 31 0.99
6COBB_STRCO (Q9RJ16) Cobyrinic acid A,C-diamide synthase 28 4.9
7BUR1_CANGA (Q6FQ83) Serine/threonine-protein kinase BUR1 (EC 2.7... 28 6.4
8EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 28 8.4

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 36  AVYVFGDSLVDVSNNDYLPAPAPRANRPHGMDLP-GRPTGRFTNGYNLSDVISQRLG 203
           AV+ FGDS+ D  NN+ L        RP+GMD P G  TGRF+NG   SD IS+ LG
Sbjct: 125 AVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLG 181



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 36  AVYVFGDSLVDVSNNDYLPAPAPRANRPHGMDLPGR-PTGRFTNGYNLSDVISQRLG 203
           AV+ FGDS+ D  NN+ L        RP+GMD   R  TGRF+NG   SD +++ +G
Sbjct: 204 AVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMG 260



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = +3

Query: 36  AVYVFGDSLVDVSNNDYLPAPAPRANRPHGMDLPGRPTGRFTNGYNLSDVISQRLG 203
           A++ FGDS  D      L A   +A  PHG    G P GR+ +G  + D I++ LG
Sbjct: 30  AIFNFGDSNSDTGG---LSAAFGQAGPPHGSSFFGSPAGRYCDGRLVIDFIAESLG 82



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>AROE_NEIPH (P95400) Shikimate dehydrogenase (EC 1.1.1.25)|
          Length = 269

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +3

Query: 15  NGGRLANAVYVFGDSLVDVSNNDYLPAPAPRANRPHGMDLPGRPTGRFTNGYNLSDVISQ 194
           NGGR AN    F      +S+     A A  A     +   G+  G  T+G  L+D I++
Sbjct: 56  NGGRGANVTVPFKQEAFALSDEHSERALAAGAVNTLILLENGKIRGDNTDGLGLTDDIAK 115

Query: 195 RLGFEMSPK 221
           RLG E+S K
Sbjct: 116 RLGVEISDK 124



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>AROE_NEIMU (P95389) Shikimate dehydrogenase (EC 1.1.1.25)|
          Length = 269

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +3

Query: 15  NGGRLANAVYVFGDSLVDVSNNDYLPAPAPRANRPHGMDLPGRPTGRFTNGYNLSDVISQ 194
           +GGR AN    F      +S+     A A  A     +   G+  G  T+G  L+D IS+
Sbjct: 56  DGGRGANVTVPFKQEAFALSDEHSERALAAGAVNTLILLENGKIRGDNTDGIGLTDDISK 115

Query: 195 RLGFEMSPK 221
           RLG E+S K
Sbjct: 116 RLGVELSGK 124



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>COBB_STRCO (Q9RJ16) Cobyrinic acid A,C-diamide synthase|
          Length = 486

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 21  GRLANAVYVFGDSLVDVSNNDYLPAPAPRANRPHGMDLPGRPTGRFTNGYNLSDVISQRL 200
           G L+ A +  G++LV  S    LP P+P A  P  +  PGRP  +  +G      ++   
Sbjct: 238 GALSCAAWDAGEALVS-SPPPPLPVPSPGAAPPDPLVRPGRPRPQAPDGLRRRVAMASGA 296

Query: 201 GFEMS 215
            F  S
Sbjct: 297 AFTFS 301



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>BUR1_CANGA (Q6FQ83) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 667

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 72  SNNDYLPAPAPRANRPHGMDLPGRPTGRFTNGYNLSDVISQRL 200
           + N  +P P P+ANR  G  LP  P      G N S  +  R+
Sbjct: 462 NQNPSVPHPQPKANRYGGSSLPSGPKYGRYEGNNHSGSLRNRI 504



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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 125 HGPPRQAHRPVHQRLQPLRRH 187
           H PPR  H P H+R  P  RH
Sbjct: 155 HTPPRGQHPPSHRRPSPPSRH 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,115,634
Number of Sequences: 219361
Number of extensions: 376494
Number of successful extensions: 1239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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