ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet18b09 |
|---|---|
| Clone Library Name | barley_pub |
>S17P_WHEAT (P46285) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 393 Score = 213 bits (541), Expect = 2e-55 Identities = 106/106 (100%), Positives = 106/106 (100%) Frame = +1 Query: 100 TRSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCA 279 TRSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCA Sbjct: 15 TRSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCA 74 Query: 280 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGGTAC 417 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGGTAC Sbjct: 75 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGGTAC 120
>S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 387 Score = 96.7 bits (239), Expect = 2e-20 Identities = 48/83 (57%), Positives = 60/83 (72%) Frame = +1 Query: 169 ATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCAIGDSLEEFLTKATPDKNLIRLLI 348 ++S +GESLR T + + A ++L T+C +GDSLEEFL KAT DK LIRL++ Sbjct: 37 SSSLFGESLRMTTKSSV-----RVNKAKNSSLVTKCELGDSLEEFLAKATTDKGLIRLMM 91 Query: 349 CMGEAMRTIAFKVRTASCGGTAC 417 CMGEA+RTI FKVRTASCGGT C Sbjct: 92 CMGEALRTIGFKVRTASCGGTQC 114
>S17P_ARATH (P46283) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 393 Score = 93.6 bits (231), Expect = 2e-19 Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 1/106 (0%) Frame = +1 Query: 103 RSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALT-TRCA 279 RS + S+S S K + ++S +G+SLR ++ A +KA S A T T+C Sbjct: 21 RSSTLVSPPSYSTSSSFKRLK-SSSIFGDSLRL-APKSQLKA---TKAKSNGASTVTKCE 75 Query: 280 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGGTAC 417 IG SLEEFL +ATPDK L LL+CMGEA+RTIAFKVRTASCGGTAC Sbjct: 76 IGQSLEEFLAQATPDKGLRTLLMCMGEALRTIAFKVRTASCGGTAC 121
>S17P_CHLRE (P46284) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 389 Score = 74.7 bits (182), Expect = 8e-14 Identities = 42/87 (48%), Positives = 56/87 (64%) Frame = +1 Query: 157 AARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCAIGDSLEEFLTKATPDKNLI 336 A+ A++F G ++ A ++ A QS+ R A+ T+ IGDSL EFL +ATPD L Sbjct: 37 ASANASAFKGAAVTARVKASTRAARVQSR---RTAVLTQAKIGDSLAEFLVEATPDPKLR 93 Query: 337 RLLICMGEAMRTIAFKVRTASCGGTAC 417 +++ M EA RTIA KVRTASC GTAC Sbjct: 94 HVMMSMAEATRTIAHKVRTASCAGTAC 120
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 35.4 bits (80), Expect = 0.054 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGV--PDQGDAGQEPHQAADLHGGGDEDDRL 380 G+ G + Q G+ + ++P + QPG + P QG GQ+P QA G Sbjct: 185 GQQPGQGQQGQQPGQGQPGYYPTSSQLQPGQLQQPAQGQQGQQPGQAQQGQQPGQGQQPG 244 Query: 381 QGQDG 395 QGQ G Sbjct: 245 QGQQG 249 Score = 32.3 bits (72), Expect = 0.45 Identities = 20/66 (30%), Positives = 28/66 (42%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDED 371 A G+ G+ + G + Q G+ + P + Q G P QG GQ+P Q G Sbjct: 586 AQGQQGQQLGQGQQGQQPGQGQQGQQPAQ--GQQGQQPGQGQHGQQPGQGQQGQQPGQGQ 643 Query: 372 DRLQGQ 389 QGQ Sbjct: 644 QPGQGQ 649
>EM3_WHEAT (Q08000) Em protein H2| Length = 93 Score = 33.1 bits (74), Expect = 0.27 Identities = 21/61 (34%), Positives = 28/61 (45%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 386 GE VVPGG GG+S AH + R GG + G+E + GG +D G Sbjct: 18 GETVVPGGT---GGKSLEAHENLAEGRSRGGQTRREQMGEEGYSEMGRKGGLSTNDESGG 74 Query: 387 Q 389 + Sbjct: 75 E 75
>LE19B_HORVU (P46532) Late embryogenesis abundant protein B19.1B| Length = 93 Score = 32.7 bits (73), Expect = 0.35 Identities = 21/61 (34%), Positives = 28/61 (45%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 386 GE VVPGG GG+S AH + R GG + G+E + GG +D G Sbjct: 18 GETVVPGGT---GGKSLEAHDNLAEGRSRGGQTRREQMGEEGYSEMGRKGGLSTNDESGG 74 Query: 387 Q 389 + Sbjct: 75 E 75
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor| Length = 838 Score = 32.3 bits (72), Expect = 0.45 Identities = 24/81 (29%), Positives = 34/81 (41%) Frame = +3 Query: 153 QGCQAGDLVLRRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEP 332 QG Q G L ++ A G+ G+ + G + Q + + P + Q G QG GQ+P Sbjct: 553 QGQQPGQL--QQPAQGQQGQQLAQGQQGQQPAQVQQGQQPAQ--GQQGQQLGQGQQGQQP 608 Query: 333 HQAADLHGGGDEDDRLQGQDG 395 Q G QGQ G Sbjct: 609 GQGQQPAQGQQGQQPGQGQQG 629
>COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)| (180 kDa bullous pemphigoid antigen 2) Length = 1431 Score = 32.3 bits (72), Expect = 0.45 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP 305 G+ G+ VPG + GG S G YR+ P G P Sbjct: 948 GDQGDPGVPGTPGIPGGHSHGESSSTTYRQGPPGPP 983
>NCKX1_BOVIN (Q28139) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1216 Score = 31.6 bits (70), Expect = 0.78 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP-----DQGDAGQEPHQAADLHG 356 A GE+GE GG+A GGES G G +P D D G+ + ++ G Sbjct: 758 AEGENGER--SGGDAALGGESEGKAE----NESEGDIPAERRGDDEDEGEIQAEGGEVKG 811 Query: 357 GGDEDDRLQGQDG 395 DE + G+ G Sbjct: 812 DEDEGEIQAGEGG 824
>LE19A_HORVU (Q05190) Late embryogenesis abundant protein B19.1A (B19.1)| Length = 93 Score = 31.6 bits (70), Expect = 0.78 Identities = 21/61 (34%), Positives = 27/61 (44%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 386 GE VVPGG GG+S A + R GG + GQE + GG +D G Sbjct: 18 GETVVPGGT---GGKSLEAQQNLAEGRSRGGQTRREQMGQEGYSEMGRKGGLSSNDESGG 74 Query: 387 Q 389 + Sbjct: 75 E 75
>NCKX1_BISBI (O46383) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) (Fragment) Length = 300 Score = 31.6 bits (70), Expect = 0.78 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP-----DQGDAGQEPHQAADLHG 356 A GE+GE GG+A GGES G G +P D D G+ + ++ G Sbjct: 26 AEGENGER--SGGDAALGGESEGKAE----NESEGDIPAERRGDDEDEGEIQAEGGEVKG 79 Query: 357 GGDEDDRLQGQDG 395 DE + G+ G Sbjct: 80 DEDEGEIQAGEGG 92 Score = 28.5 bits (62), Expect = 6.6 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 13/89 (14%) Frame = +3 Query: 168 GDLVLRRVAAGEHGEDVVPGGE------AVQGGESRGAHHPVRYRRQPGG-VPDQ----- 311 GD + AGE GE V G E A +GGE G + GG V D Sbjct: 96 GDEDEGEIQAGEGGE--VEGDEDEGEIQAGEGGEVEGDEDEGEIQAGEGGEVKDDEGEIQ 153 Query: 312 -GDAGQEPHQAADLHGGGDEDDRLQGQDG 395 G+AG+ + ++ GG DE + G+ G Sbjct: 154 AGEAGEVEGEDGEVEGGEDEGEIQAGEGG 182
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 30.8 bits (68), Expect = 1.3 Identities = 23/72 (31%), Positives = 27/72 (37%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 365 R AAGE G D VPGG ++G PGG G G Q G Sbjct: 518 RGAAGEPGRDGVPGGPGMRGMPG-----------SPGGPGSDGKPGPPGSQGESGRPGPP 566 Query: 366 EDDRLQGQDGVL 401 +GQ GV+ Sbjct: 567 GPSGPRGQPGVM 578
>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50| Length = 552 Score = 30.8 bits (68), Expect = 1.3 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 279 YRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQ 383 ++ GGVPD +AG + ++D DEDD LQ Sbjct: 181 FQHAMGGVPDWAEAGSKRRTSSDDESEEDEDDLLQ 215
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)| (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 30.8 bits (68), Expect = 1.3 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP 305 G+ G+ VPG + GG S GA Y + P G P Sbjct: 951 GDQGDPGVPGTPGISGGLSHGASSSTLYMQGPPGPP 986
>DBPA_HUMAN (P16989) DNA-binding protein A (Cold shock domain-containing| protein A) (Single-strand DNA-binding protein NF-GMB) Length = 372 Score = 30.4 bits (67), Expect = 1.7 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 186 RVAAGEHGE--DVVPGGEAVQGGESRGAHHPVRYRR----QPGGVPDQGDAGQEPHQAA 344 R+ AGE GE D VP G +QG R + RYR +P P G+A + +Q A Sbjct: 258 RIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQA 316
>SEEP_RAPSA (P11573) Late seed maturation protein P8B6| Length = 83 Score = 30.4 bits (67), Expect = 1.7 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGG--DEDDRL 380 GE VVPGG GG+S A + R GG + G E +Q GG D+ D+ Sbjct: 17 GETVVPGGT---GGKSFEAQQHLAEGRSRGGNTRKEQLGSEGYQQMGRKGGSTPDKTDKE 73 Query: 381 QGQD 392 +D Sbjct: 74 DAED 77
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 30.4 bits (67), Expect = 1.7 Identities = 24/71 (33%), Positives = 28/71 (39%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 365 R A GE GE PG + G P QPG +QG+AGQ+ A G Sbjct: 749 RGAPGERGETGPPGTSGIAG--------PPGADGQPGAKGEQGEAGQKGDAGAPGPQGPS 800 Query: 366 EDDRLQGQDGV 398 QG GV Sbjct: 801 GAPGPQGPTGV 811
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 30.4 bits (67), Expect = 1.7 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +3 Query: 222 PG-GEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 386 PG G +G E RG PGG+ G HQ HG GDE DR++G Sbjct: 1043 PGRGHVGRGEEGRGVG--------PGGLAGAGPVHAVAHQRR--HGAGDEGDRVRG 1088
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 30.0 bits (66), Expect = 2.3 Identities = 25/71 (35%), Positives = 27/71 (38%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 365 R A GE GE PG G P QPG DQG+AGQ+ A G Sbjct: 750 RGAPGERGETGPPGPAGFAG--------PPGADGQPGAKGDQGEAGQKGDAGAPGPQGPS 801 Query: 366 EDDRLQGQDGV 398 QG GV Sbjct: 802 GAPGPQGPTGV 812
>CD2A2_MONDO (O77618) Cyclin-dependent kinase inhibitor 2A, isoform 2 (p19ARF)| Length = 155 Score = 30.0 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Frame = +3 Query: 174 LVLRRVAAGEHGED---VVPGGE--AVQGGESRGAH---HPVRYRRQPGGVPDQGDAGQE 329 +V ++ G G D PG AV+GG HP RR PGG+P DA Sbjct: 49 IVRKKRHRGRSGHDDGQCTPGSNPVAVRGGTQHPRPDNPHPASPRRCPGGLPGHSDAAPS 108 Query: 330 PHQAADLHG 356 AA G Sbjct: 109 GRGAAGCQG 117
>SODC_HORSE (P00443) Superoxide dismutase [Cu-Zn] (EC 1.15.1.1)| Length = 153 Score = 29.6 bits (65), Expect = 2.9 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Frame = +3 Query: 162 QAGDLVLRR----VAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 329 + G +VL+ + G+HG V G+ QG + GAH ++ G ++ G Sbjct: 25 EGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDL 84 Query: 330 PHQAADLHGGGDEDDR-----LQGQDGVLRR 407 + AD +G D D + L G+ ++ R Sbjct: 85 GNVTADENGKADVDMKDSVISLSGKHSIIGR 115
>AROB_XANAC (Q8PI87) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 370 Score = 29.6 bits (65), Expect = 2.9 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +1 Query: 136 SQSYRPKAARPATSFYGESLRANTAR-TSFPAGRQSKAASRAALTTRCAIGDSLEEFLTK 312 S+S A+P T L A+ AR S GR + S + + A G + L++ Sbjct: 7 SRSVDVDGAQPYTITIAPGLLADGARLASHVRGRHALLLSDSQVAPHYAAG--VRAALSR 64 Query: 313 ATPDKNLIRLLICMGEAMRTI 375 A PD + L+I GEA +T+ Sbjct: 65 ARPDLQVGELVIAAGEASKTL 85
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/58 (36%), Positives = 21/58 (36%) Frame = +3 Query: 222 PGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQGQDG 395 PG G S G P R PGG P G AG GG D R QG G Sbjct: 214 PGNNPFTSGGSTGMARPQAPR--PGGAPRPGGAGAPGGPRPQGAGGQDRAPRPQGGPG 269
>EMP1_ORYSA (P46520) Embryonic abundant protein 1| Length = 95 Score = 29.6 bits (65), Expect = 2.9 Identities = 24/76 (31%), Positives = 33/76 (43%) Frame = +3 Query: 162 QAGDLVLRRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQA 341 Q G L R+A G+ VVPGG GG+S A + R GG + G+E ++ Sbjct: 7 QQGRSELDRMA--REGQTVVPGGT---GGKSLEAQENLAEGRSRGGQTRKEQMGEEGYRE 61 Query: 342 ADLHGGGDEDDRLQGQ 389 GG D G+ Sbjct: 62 MGRKGGLSTGDESGGE 77
>EM2_WHEAT (P22701) Em protein CS41| Length = 94 Score = 29.6 bits (65), Expect = 2.9 Identities = 24/80 (30%), Positives = 34/80 (42%) Frame = +3 Query: 150 AQGCQAGDLVLRRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 329 A G + G L +A G+ VVPGG GG+S A + R GG + G+E Sbjct: 2 ASGQEKGRSELDSLA--REGQTVVPGGT---GGKSYEAQEKLAEGRSRGGQTRKEQMGEE 56 Query: 330 PHQAADLHGGGDEDDRLQGQ 389 + GG +D G+ Sbjct: 57 GYSEMGRKGGLSTNDESGGE 76
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 29.3 bits (64), Expect = 3.8 Identities = 25/71 (35%), Positives = 27/71 (38%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 365 R A GE GE PG G P QPG DQG+AGQ+ A G Sbjct: 790 RGAPGEPGETGPPGPAGFAG--------PPGADGQPGAKGDQGEAGQKGDAGAPGPQGPS 841 Query: 366 EDDRLQGQDGV 398 QG GV Sbjct: 842 GAPGPQGPTGV 852
>EM1_WHEAT (P04568) Em protein| Length = 93 Score = 29.3 bits (64), Expect = 3.8 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 386 GE VVPGG GG+S A + R GG + G+E + GG +D G Sbjct: 18 GETVVPGGT---GGKSLEAQENLAEGRSRGGQTRREQMGEEGYSQMGRKGGLSTNDESGG 74
>ALGE4_AZOVI (Q44493) Poly(beta-D-mannuronate) C5 epimerase 4 (EC 5.1.3.-)| (Mannuronan epimerase 4) Length = 553 Score = 29.3 bits (64), Expect = 3.8 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +3 Query: 288 QPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQGQDGVLR 404 +PG P Q G + GGD DD+LQG G R Sbjct: 376 EPGATPQQPSTGSDGEPLV----GGDTDDQLQGGSGADR 410
>SOX10_HUMAN (P56693) Transcription factor SOX-10| Length = 466 Score = 29.3 bits (64), Expect = 3.8 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Frame = +3 Query: 183 RRVAAGEHGEDVVPGGEAVQGGESR-GAHHPVRY--RRQPGGVPDQGDAGQEPHQAADLH 353 R+ GE PGGEA QGG + AH+ + R PG D G H + H Sbjct: 178 RKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSD-GNPEHPSGQSH 236 Query: 354 G 356 G Sbjct: 237 G 237
>IR09_HCMVA (P16807) Hypothetical protein IRL9 (TRL9)| Length = 143 Score = 28.9 bits (63), Expect = 5.0 Identities = 22/70 (31%), Positives = 31/70 (44%) Frame = +3 Query: 183 RRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGG 362 RR G G+ G EA + YR+ PG + ++ GQ+P D +G Sbjct: 75 RRSGRGPVGD----GREASRTAAEEKRRRKENYRQGPGFLLEKQHVGQDP----DANGNH 126 Query: 363 DEDDRLQGQD 392 D+DD GQD Sbjct: 127 DDDDH-AGQD 135
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/72 (29%), Positives = 26/72 (36%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 365 R AGE G D PGG ++G PGG + G G Q G Sbjct: 517 RGVAGEPGRDGTPGGPGIRGMPG-----------SPGGPGNDGKPGPPGSQGESGRPGPP 565 Query: 366 EDDRLQGQDGVL 401 +GQ GV+ Sbjct: 566 GPSGPRGQPGVM 577
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/72 (29%), Positives = 26/72 (36%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 365 R AGE G D PGG ++G PGG + G G Q G Sbjct: 517 RGVAGEPGRDGTPGGPGIRGMPG-----------SPGGPGNDGKPGPPGSQGESGRPGPP 565 Query: 366 EDDRLQGQDGVL 401 +GQ GV+ Sbjct: 566 GPSGPRGQPGVM 577
>EMB5_MAIZE (P46517) Late embryogenesis abundant protein EMB564| Length = 91 Score = 28.9 bits (63), Expect = 5.0 Identities = 20/61 (32%), Positives = 26/61 (42%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 386 GE VVPGG GG+S A + R GG + GQ+ + GG D G Sbjct: 18 GETVVPGGT---GGKSVEAQEHLAEGRSRGGQTRREQLGQQGYSEMGKKGGLSTTDESGG 74 Query: 387 Q 389 + Sbjct: 75 E 75
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 28.9 bits (63), Expect = 5.0 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 7/73 (9%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQG-------GESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHG 356 G GE +PGG G S G P PG V G+AG++ H D Sbjct: 868 GTRGERGLPGGPGSNGEPGPSGLAGSSGPRGPPGSVGSPGPVGHSGEAGRDGHPGNDGPP 927 Query: 357 GGDEDDRLQGQDG 395 G D +G+ G Sbjct: 928 GRDGLPGAKGERG 940
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 28.5 bits (62), Expect = 6.6 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESR-GAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDD 374 G+H ED PGG+ G G PV P G+ G G+ H H G D Sbjct: 602 GDH-EDATPGGKGFPGPLGPPGKAGPVG----PPGLGFPGPPGERGHPGVPGHPGVRGPD 656 Query: 375 RLQGQDG 395 L+GQ G Sbjct: 657 GLKGQKG 663
>MARCS_BOVIN (P12624) Myristoylated alanine-rich C-kinase substrate (MARCKS)| (ACAMP-81) Length = 331 Score = 28.5 bits (62), Expect = 6.6 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGA-HHPVRYRRQPGGVPDQGDAGQEPHQA 341 A+ E G+D GG A GE+ A P + ++G AG +P +A Sbjct: 188 ASAEGGKDEASGGAAAAAGEAGAAPGEPTAAPGEEAAAGEEGAAGGDPQEA 238
>ZN687_MOUSE (Q9D2D7) Zinc finger protein 687| Length = 1237 Score = 28.5 bits (62), Expect = 6.6 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYR 284 + E + P ++++GG G H P+RYR Sbjct: 1086 SCSEEPDSTTPPAKSLRGGPGSGGHGPLRYR 1116
>EXPA5_ARATH (Q38864) Alpha-expansin 5 precursor (AtEXPA5) (At-EXP5) (AtEx5)| (Ath-ExpAlpha-1.4) Length = 255 Score = 28.5 bits (62), Expect = 6.6 Identities = 18/53 (33%), Positives = 21/53 (39%) Frame = +3 Query: 237 VQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQGQDG 395 VQGG RG HHP G G + A +GGGD + G G Sbjct: 20 VQGGYRRGGHHP------------GGHMGPWINAHATFYGGGDASGTMGGACG 60
>CTND1_MOUSE (P30999) Catenin delta-1 (p120 catenin) (p120(ctn))| (Cadherin-associated Src substrate) (CAS) (p120(cas)) Length = 911 Score = 28.5 bits (62), Expect = 6.6 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 14/79 (17%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGG--VPDQGDA-GQEPH-----QAADLH 353 G H ED PGG G SR RYR G P + D G +P + DLH Sbjct: 214 GRHYEDGYPGGSDNYGSLSRVTRIEERYRPSMEGYRAPSRQDVYGPQPQVRVGGSSVDLH 273 Query: 354 G------GGDEDDRLQGQD 392 G ++D R G D Sbjct: 274 RFHPEPYGLEDDQRSMGYD 292
>RNB_HHV1M (P56958) RNA-binding protein (Vmw21)| Length = 161 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/50 (34%), Positives = 19/50 (38%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAAD 347 G DV G G RG H P + R G P +GD Q Q D Sbjct: 11 GPGDPDVYLKGVPSAGMHPRGVHAPRGHPRMISGPPQRGDNDQAAGQCGD 60
>RNB_HHV11 (P04487) RNA-binding protein (Vmw21)| Length = 161 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/50 (34%), Positives = 19/50 (38%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAAD 347 G DV G G RG H P + R G P +GD Q Q D Sbjct: 11 GPGDPDVYLKGVPSAGMHPRGVHAPRGHPRMISGPPQRGDNDQAAGQCGD 60
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +1 Query: 130 SFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCAIGDSL 294 S +Q P+A+ P + E+LR + R P A+R T CA D+L Sbjct: 747 SCAQRDNPRASSPNRTIQQENLRTSCTRQDNPRTSSPNRATRDNPRTSCAQRDNL 801
>GUN1_USTMA (P54424) Endoglucanase 1 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase 1) (Cellulase 1) (EG 1) Length = 393 Score = 28.1 bits (61), Expect = 8.6 Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 2/78 (2%) Frame = +3 Query: 159 CQAGDLVLRRVAAGEHGEDVVPGGEAVQG--GESRGAHHPVRYRRQPGGVPDQGDAGQEP 332 C AG + A G G GG G G + G+ QP G DQG + + Sbjct: 267 CLAGGKKGKSAAGGVDGSGDASGGADASGAGGAAEGSQGQPEGYGQPSGGNDQGSSNGDA 326 Query: 333 HQAADLHGGGDEDDRLQG 386 A G D G Sbjct: 327 TTGAGSGSGSDSGSTANG 344
>DPY5_CAEEL (P91285) Cuticle collagen dpy-5 (Protein dumpy-5)| Length = 284 Score = 28.1 bits (61), Expect = 8.6 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Frame = +3 Query: 195 AGEHGEDVVPGGEAVQG--GESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDE 368 AG G+D +PG E QG G++ P + +PG V D GD G G Sbjct: 142 AGPPGQDGLPGQEGFQGLPGDAGKRGTPGK-DGEPGRVGDIGDQGTPGQDGQPGLAGPPG 200 Query: 369 DDRL--QGQDGVLRR 407 D L +GQ GV R Sbjct: 201 RDGLTGKGQPGVAGR 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,372,039 Number of Sequences: 219361 Number of extensions: 700217 Number of successful extensions: 3226 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 3016 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3204 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
