>LEXA_RHOPA (P61614) LexA repressor (EC 3.4.21.88)|
          Length = 236

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = -2

Query: 281 REPKPAVDATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPAD 144
           R P P     D DRGS A    GR     P E   S +H    PAD
Sbjct: 96  RPPSPTPAEDDHDRGSVAVPVMGRIAAGTPIEALQSRSHTISVPAD 141

>NFKB1_HUMAN (P19838) Nuclear factor NF-kappa-B p105 subunit (DNA-binding factor|
            KBF1) (EBP-1) [Contains: Nuclear factor NF-kappa-B p50
            subunit]
          Length = 968

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -2

Query: 185  KSSSATHMSP-APADTRPPVDRTRNSKSSAASGVELXXXXXXXXXXSTMVAGFFAWSK 15
            K++S  H  P +PA TR  +D  R+S S   SGVE            T  A     +K
Sbjct: 896  KTTSQAHSLPLSPASTRQQIDELRDSDSVCDSGVETSFRKLSFTESLTSGASLLTLNK 953

>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 257 ATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRNSKSSA 99
           +T S  GS +S    RSG S    +SSS++  S +P+ +R   D  R S+S +
Sbjct: 90  STGSSSGSSSSSASSRSGSS-STSRSSSSSSSSGSPSPSRRRHDNRRRSRSKS 141

>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 257 ATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRNSKSSA 99
           +T S  GS +S    RSG S    +SSS++  S +P+ +R   D  R S+S +
Sbjct: 90  STGSSSGSSSSSASSRSGSS-STSRSSSSSSSSGSPSPSRRRHDNRRRSRSKS 141

>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 257 ATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRNSKSSA 99
           +T S  GS +S    RSG S    +SSS++  S +P+ +R   D  R S+S +
Sbjct: 90  STGSSSGSSSSSASSRSGSS-STSRSSSSSSSSGSPSPSRRRHDNRRRSRSKS 141

>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 257 ATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRNSKSSA 99
           +T S  GS +S    RSG S    +SSS++  S +P+ +R   D  R S+S +
Sbjct: 90  STGSSSGSSSSSASSRSGSS-STSRSSSSSSSSGSPSPSRRRHDNRRRSRSKS 141

>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 257 ATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRNSKSSA 99
           +T S  GS +S    RSG S    +SSS++  S +P+ +R   D  R S+S +
Sbjct: 90  STGSSSGSSSSSASSRSGSS-STSRSSSSSSSSGSPSPSRRRHDNRRRSRSKS 141

>YPUB_RHOVI (P20467) Hypothetical protein in pufB 5'region (Fragment)|
          Length = 255

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/35 (60%), Positives = 21/35 (60%)
 Frame = -1

Query: 222 RRGAEREEPAVGEELVRHAHVARAGRYEAAGGQDA 118
           R  AERE  AVGEE V  A VARA R    GGQ A
Sbjct: 222 RDAAEREARAVGEERVTVACVARA-RAALVGGQAA 255

>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 972

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 251 DSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRNSKSSAA 96
           D DRGS +S     S  S   E+SSS+   S + + ++     +R+S SS++
Sbjct: 147 DKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRHSSSSSS 198

>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs|
          Length = 716

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -2

Query: 284 EREPKPAVDATDSDRGSR---ASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRN 114
           E E +   D    D G     A ++EG+ G   P  +   A   +PAPA+  PP      
Sbjct: 603 EAEAEVEEDGAGQDNGEEEMEAQEEEGQEGEQEP--EPEPAPVQTPAPAEPAPPAKTPAK 660

Query: 113 SKSSAAS 93
           + + AA+
Sbjct: 661 TPTKAAA 667

>CCD96_MACFA (Q95LS7) Coiled-coil domain-containing protein 96|
          Length = 560

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 243 PREQGVERRGAEREEPAVGEELVRHAH--VARAGRYEAAGGQDAELE 109
           P E   E R  E E+ A G+E+   A   + R G  EAA   +AE E
Sbjct: 122 PEELDAEARAEELEQAAEGKEVRSQASLPLTRIGEEEAAAAPEAETE 168

>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)|
          Length = 691

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 281 REPKPAVDATDSDRGSRASKDE--GRSGRSLPWEKSSSATHMSPAPADTRPP 132
           R P+P V  T++    +++K     RS RSLP   +++     P P+    P
Sbjct: 19  RNPRPQVSRTETSHSVKSAKSNKSSRSRRSLPSSSTTNTNSNVPDPSTPSKP 70

>GLMM_SYNPX (Q7U9H6) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 462

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 237 EQGVERRGAEREEPAVGEELVRHAHVARAGRYEAAGGQDA 118
           E+  ERRG E E   VG++   H H A      A GG+ +
Sbjct: 301 ERAWERRGGELERTPVGDQ---HVHAAMVANGAALGGEQS 337

>RPGF2_HUMAN (Q9Y4G8) Rap guanine nucleotide exchange factor 2 (Neural RAP guanine|
            nucleotide exchange protein) (nRap GEP) (PDZ
            domain-containing guanine nucleotide exchange factor 1)
            (PDZ-GEF1) (RA-GEF)
          Length = 1499

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 269  PAVDATDSDRGSRASKDEGRSGRSLPWEKSSSATH 165
            P+ +    D+G RAS D   SGR   W   SS +H
Sbjct: 1224 PSTEELSQDQGDRASLDAADSGRG-SWTSCSSGSH 1257

>RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1|
          Length = 1906

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 22/64 (34%), Positives = 28/64 (43%)
 Frame = -2

Query: 281  REPKPAVDATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRNSKSS 102
            R PKP   +  SDR   A K +              +  M+P P   R  V R+R+S SS
Sbjct: 1204 RVPKPGAGSKLSDRPLHALKRK--------------SAFMAPVPTKKRNLVLRSRSSSSS 1249

Query: 101  AASG 90
             ASG
Sbjct: 1250 NASG 1253

>ATG26_LEPMC (Q8NJS1) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26) (UDP-glycosyltransferase
           51)
          Length = 1456

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 272 KPAVDATDSDRGSRASKDEGRSGR--SLPWEKSSSATHMSPAPA 147
           + +VDA   +R  R S D GR+ R  SL   + S   H SP+P+
Sbjct: 519 RSSVDANRKNRDVRRSMDAGRTLRRWSLEGRRLSHEAHRSPSPS 562

>TIM_HUMAN (Q9UNS1) Timeless homolog (hTIM)|
          Length = 1208

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 243 PREQGVERRGAEREEPAVGEE 181
           PR+QG E RGAE EE    EE
Sbjct: 655 PRQQGPEERGAEEEEEEEEEE 675

>RPGF2_MOUSE (Q8CHG7) Rap guanine nucleotide exchange factor 2 (Neural RAP|
           guanine nucleotide exchange protein) (nRap GEP) (PDZ
           domain-containing guanine nucleotide exchange factor 1)
           (PDZ-GEF1) (Fragment)
          Length = 1138

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 269 PAVDATDSDRGSRASKDEGRSGRSLPWEKSSSATH 165
           P+ +    D+G RAS D   SGR   W   SS +H
Sbjct: 865 PSTEELSHDQGDRASLDAADSGRG-SWTSCSSGSH 898

>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase|
           1) (Cyclophilin) (BmCYP-1)
          Length = 843

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 251 DSDRGSRASKDEGRSGRSLPWEKSSS---ATHMSPAPADTRPPVDRTRNSKSSAAS 93
           DSDR SR S+    S  S   E SSS   +T  S A +      D +R+S+S +++
Sbjct: 788 DSDRHSRRSRKRSPSSSSSSSESSSSDSRSTASSSASSKRSSSSDSSRSSRSRSSN 843

>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein|
           Zimp10)
          Length = 1072

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -2

Query: 215 GRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRNSKSSAASGVELXXXXXXXXXXSTMVA 36
           G  G    +    SA      P  TRPP D T+ + ++AA+ V            +T+ A
Sbjct: 246 GSGGFGASYPGGPSAPAGMGIPPHTRPPADFTQPAAAAAAAAVAAAAATATATATATVAA 305

>CYB6_CHLLT (Q59297) Cytochrome bc complex cytochrome b subunit|
          Length = 427

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -2

Query: 278 EPKPAVDATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRT-----RN 114
           +PKPA          +A+    R G + P  K ++    +P+    +PPVDR      ++
Sbjct: 15  KPKPAAPGAAKPAAPKAA----RPGAAKPAAKPAAPRAAAPSGVYKKPPVDRPDPNPFKD 70

Query: 113 SKSSAASG 90
           SK  A +G
Sbjct: 71  SKRDAVAG 78

>LYPD3_HUMAN (O95274) Ly6/PLAUR domain-containing protein 3 precursor|
           (GPI-anchored metastasis-associated protein C4.4A
           homolog) (Matrigel-induced gene C4 protein) (MIG-C4)
          Length = 346

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 234 QGVERRGAEREEPAVGEELVRHAHVARAGRYEAAGG 127
           QGVE   +  EEP +      H   + +G+Y A GG
Sbjct: 282 QGVEHEASRDEEPRLTGGAAGHQDRSNSGQYPAKGG 317

>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 243 PREQGVERRGAEREEPAVGEELVRHAHVARAGRYEAAGGQDA 118
           PR + VE   AE E  + GE +   A    AG  E  G +DA
Sbjct: 268 PRSEAVEVAAAENEGHSPGESVEDAAAEEAAGTREPEGSEDA 309

>RL1_HHV2H (P28283) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)|
          Length = 261

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -2

Query: 257 ATDSDRGSRASKDEGRSGRSLPWE---KSSSATHMSPAPADTRPPVDRTR 117
           A DSD    A  D+     S P E   K+  A H +PA A   PP  + R
Sbjct: 73  ADDSDDADYAGNDDAEWANSPPSEGGGKAPEAPHAAPAAACPPPPPRKER 122

>P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150 kDa matrix|
           phosphoprotein) (Basic phosphoprotein) (BPP) (Tegument
           protein UL32)
          Length = 1048

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 278 EPKPAVDATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRNSKSSA 99
           +P+PA   T S R    +   G S  S   + S+SA+ +SP   D   P     +  SSA
Sbjct: 820 QPQPASSKTTSSRN--VTSGAGTSSASSARQPSASASVLSPTEDDVVSPATSPLSMLSSA 877

Query: 98  A 96
           +
Sbjct: 878 S 878

>UL35_HCMVA (P16766) Protein UL35|
          Length = 640

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -2

Query: 272 KPAVDATDSDRGSRASKDEGRSGRSLPWEKSSSATHMSPAPADTRPPVDRTRN-SKSSAA 96
           +P  DA  S   S +S     +  SLP  +SSS    +PA   T      T     SS+ 
Sbjct: 494 RPVTDAASSSSASSSSSSASPNSVSLPSARSSSTRTTTPASTYTSAGTSSTTGLLLSSSL 553

Query: 95  SG 90
           SG
Sbjct: 554 SG 555


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,329,417
Number of Sequences: 219361
Number of extensions: 354998
Number of successful extensions: 1961
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1951
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)