ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet17g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.18
2dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.18
3dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.18
4dbj|AK103630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.18
5gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome... 40 0.72
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 0.72
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.72
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.72
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.72
10gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome... 40 0.72
11dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.72
12dbj|AK107769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.72
13gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 0.72
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
16dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 2.9
18emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb... 38 2.9
19emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb... 38 2.9

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 21      accagaaccctagcccccgccgccg 45
               |||||||||||||| ||||||||||
Sbjct: 2371082 accagaaccctagctcccgccgccg 2371058



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>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0036F10
          Length = 149415

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 21   accagaaccctagcccccgccgccg 45
            |||||||||||||| ||||||||||
Sbjct: 2540 accagaaccctagctcccgccgccg 2516



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>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0007O20
          Length = 147363

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 21    accagaaccctagcccccgccgccg 45
             |||||||||||||| ||||||||||
Sbjct: 92883 accagaaccctagctcccgccgccg 92859



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>dbj|AK103630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133P12,
          full insert sequence
          Length = 2407

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 21 accagaaccctagcccccgccgccg 45
          |||||||||||||| ||||||||||
Sbjct: 3  accagaaccctagctcccgccgccg 27



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>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0094P07, complete sequence
          Length = 162311

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    gaaccctagcccccgccgcc 44
             ||||||||||||||||||||
Sbjct: 80239 gaaccctagcccccgccgcc 80220



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      aaccctagcccccgccgccg 45
               ||||||||||||||||||||
Sbjct: 5655078 aaccctagcccccgccgccg 5655059



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 25      gaaccctagcccccgccgcc 44
               ||||||||||||||||||||
Sbjct: 5217160 gaaccctagcccccgccgcc 5217179



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 25       gaaccctagcccccgccgcc 44
                ||||||||||||||||||||
Sbjct: 20248714 gaaccctagcccccgccgcc 20248695



 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 25       gaaccctagcccccgccgcc 44
                ||||||||||||||||||||
Sbjct: 20230495 gaaccctagcccccgccgcc 20230476



 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 25       gaaccctagcccccgccgcc 44
                ||||||||||||||||||||
Sbjct: 20212275 gaaccctagcccccgccgcc 20212256



 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 25       gaaccctagcccccgccgcc 44
                ||||||||||||||||||||
Sbjct: 20201347 gaaccctagcccccgccgcc 20201328



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      aaccctagcccccgccgccg 45
               ||||||||||||||||||||
Sbjct: 5654291 aaccctagcccccgccgccg 5654272



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>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0014O06,
              complete sequence
          Length = 168031

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     aaccctagcccccgccgccg 45
              ||||||||||||||||||||
Sbjct: 118777 aaccctagcccccgccgccg 118758



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>dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1372_D12
          Length = 179898

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     gaaccctagcccccgccgcc 44
              ||||||||||||||||||||
Sbjct: 151102 gaaccctagcccccgccgcc 151083



 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     gaaccctagcccccgccgcc 44
              ||||||||||||||||||||
Sbjct: 132883 gaaccctagcccccgccgcc 132864



 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     gaaccctagcccccgccgcc 44
              ||||||||||||||||||||
Sbjct: 114663 gaaccctagcccccgccgcc 114644



 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     gaaccctagcccccgccgcc 44
              ||||||||||||||||||||
Sbjct: 103735 gaaccctagcccccgccgcc 103716



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>dbj|AK107769.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-B05, full
           insert sequence
          Length = 940

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  aaccctagcccccgccgccg 45
           ||||||||||||||||||||
Sbjct: 181 aaccctagcccccgccgccg 162



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 25      gaaccctagcccccgccgcc 44
               ||||||||||||||||||||
Sbjct: 5283637 gaaccctagcccccgccgcc 5283656



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 26      aaccctagcccccgccgcc 44
               |||||||||||||||||||
Sbjct: 2543194 aaccctagcccccgccgcc 2543176



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 26       aaccctagcccccgccgcc 44
                |||||||||||||||||||
Sbjct: 30620994 aaccctagcccccgccgcc 30621012



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>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0643A10
          Length = 187931

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     aaccctagcccccgccgcc 44
              |||||||||||||||||||
Sbjct: 133002 aaccctagcccccgccgcc 133020



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 26      aaccctagcccccgccgcc 44
               |||||||||||||||||||
Sbjct: 2543138 aaccctagcccccgccgcc 2543120



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>emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb0104J15 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 136490

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     aaccctagcccccgccgcc 44
              |||||||||||||||||||
Sbjct: 124815 aaccctagcccccgccgcc 124833



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>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb
           from chromosome 12 of cultivar Nipponbare of ssp.
           japonica of Oryza sativa (rice), complete sequence
          Length = 122901

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  aaccctagcccccgccgcc 44
           |||||||||||||||||||
Sbjct: 298 aaccctagcccccgccgcc 316


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 330,436
Number of Sequences: 3902068
Number of extensions: 330436
Number of successful extensions: 23400
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23251
Number of HSP's gapped (non-prelim): 149
length of query: 72
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 51
effective length of database: 17,151,101,840
effective search space: 874706193840
effective search space used: 874706193840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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