>LBD41_ARATH (Q9M886) LOB domain protein 41|
          Length = 263

 Score =  149 bits (375), Expect = 2e-36
 Identities = 72/79 (91%), Positives = 75/79 (94%)
 Frame = +2

Query: 155 MRLSCNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDD 334
           MR+SCNGCRVLRKGCSEDCSIRPCL WIKSPEAQANATVFLAKFYGRAGLMNLINAG  +
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAG-PN 59

Query: 335 SLRPGIFRSLLYEACGRIV 391
            LRPGIFRSLL+EACGRIV
Sbjct: 60  HLRPGIFRSLLHEACGRIV 78

>LBD40_ARATH (Q9ZW96) LOB domain protein 40|
          Length = 233

 Score =  144 bits (363), Expect = 5e-35
 Identities = 69/79 (87%), Positives = 73/79 (92%)
 Frame = +2

Query: 155 MRLSCNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDD 334
           MR+SCNGCRVLRKGCSE+CSIRPCLQWIKS E+QANATVFLAKFYGRAGLMNL+N G  D
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTG-PD 59

Query: 335 SLRPGIFRSLLYEACGRIV 391
            LRP IFRSLLYEACGRIV
Sbjct: 60  HLRPAIFRSLLYEACGRIV 78

>LBD42_ARATH (Q9CA30) LOB domain protein 42|
          Length = 233

 Score =  138 bits (347), Expect = 4e-33
 Identities = 64/79 (81%), Positives = 73/79 (92%)
 Frame = +2

Query: 155 MRLSCNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDD 334
           MR+SCNGCRVLRKGC++DC+IRPCLQWIKS ++QANAT+FLAKFYGRAGL+NLI +G  D
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESG-PD 59

Query: 335 SLRPGIFRSLLYEACGRIV 391
            LRP IFRSLLYEACGRIV
Sbjct: 60  HLRPAIFRSLLYEACGRIV 78

>LBD38_ARATH (Q9SN23) LOB domain protein 38|
          Length = 247

 Score =  118 bits (296), Expect = 3e-27
 Identities = 54/77 (70%), Positives = 67/77 (87%)
 Frame = +2

Query: 161 LSCNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDDSL 340
           +SCNGCRVLRKGCSE+C +RPC+QWI+SPEAQ +ATVF+AKF+GRAGLM+ I+A   +S 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISA-VPESQ 59

Query: 341 RPGIFRSLLYEACGRIV 391
            P +F+SLLYEACGR V
Sbjct: 60  CPALFQSLLYEACGRTV 76

>LBD37_ARATH (Q9FN11) LOB domain protein 37|
          Length = 250

 Score =  117 bits (294), Expect = 5e-27
 Identities = 53/77 (68%), Positives = 67/77 (87%)
 Frame = +2

Query: 161 LSCNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDDSL 340
           +SCNGCRVLRKGCSE+C +RPC+QWI++ +AQ +ATVF+AKF+GRAGLM+ I+A   DS 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISA-VPDSQ 59

Query: 341 RPGIFRSLLYEACGRIV 391
           RP +F+SLLYEACGR V
Sbjct: 60  RPALFQSLLYEACGRTV 76

>LBD39_ARATH (Q9SZE8) LOB domain protein 39|
          Length = 240

 Score =  112 bits (280), Expect = 2e-25
 Identities = 51/77 (66%), Positives = 65/77 (84%)
 Frame = +2

Query: 161 LSCNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDDSL 340
           +SCNGCRVLRKGCSE C +RPCLQWI+S E+Q +ATVF+AKF+GRAGLM+ I++   +  
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISS-VPELQ 59

Query: 341 RPGIFRSLLYEACGRIV 391
           RP +F+SLL+EACGR V
Sbjct: 60  RPALFQSLLFEACGRTV 76

>LBD10_ARATH (O64836) Putative LOB domain protein 10|
          Length = 311

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +2

Query: 167 CNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDDSLRP 346
           C  C++LR+ C+++C   P       P       +F+ + +G + +  ++N    D  R 
Sbjct: 6   CAACKLLRRKCTQECVFAPYF-----PPTNPQKFIFVHRVFGASNVTKILNDLPPDQ-RE 59

Query: 347 GIFRSLLYEACGRI 388
               SL YEA  RI
Sbjct: 60  DTVNSLFYEAEARI 73

>LBD11_ARATH (Q9SK08) LOB domain protein 11|
          Length = 229

 Score = 33.9 bits (76), Expect = 0.096
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 137 QGPTPTMRLS-CNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNL 313
           Q P P + LS C  C++LR+ C++ C + P       P   A  T+   + +G + ++  
Sbjct: 42  QPPQPPVVLSPCAACKILRRRCADKCVLAPYF----PPTDPAKFTI-AHRVFGASNIIKF 96

Query: 314 INAGTDDSLRPGIFRSLLYEACGRI 388
           +     +S R     S++YEA  R+
Sbjct: 97  LQE-LPESQRTDAVNSMVYEAGARM 120

>LBD1_ARATH (Q9LQR0) LOB domain protein 1|
          Length = 190

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
 Frame = +2

Query: 116 SSTYTLSQGPTPTMRLS-------CNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVF 274
           ++T  +S   +P   LS       C  C++LR+ C+E C + P       P   A  T+ 
Sbjct: 10  ATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYF----PPTDPAKFTI- 64

Query: 275 LAKFYGRAGLMNLINAGTDDSLRPGIFRSLLYEACGRI 388
             + +G + ++  +     +S R     S++YEA  RI
Sbjct: 65  AHRVFGASNIIKFLQE-LPESQRTDAVNSMVYEAEARI 101

>LBD14_ARATH (Q9SJW5) LOB domain protein 14|
          Length = 188

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +2

Query: 167 CNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDDSLRP 346
           C GC+ LR+ C E C   P   +    E  ++    + K +G +    LI+   D   R 
Sbjct: 8   CGGCKFLRRKCVEGCVFAPYFCY----EEGSSNFAAIHKVFGASNFSKLISHLPDHD-RC 62

Query: 347 GIFRSLLYEACGRI 388
              R++ YEA  R+
Sbjct: 63  DAVRTISYEAHSRL 76

>LBD15_ARATH (Q8L5T5) LOB domain protein 15|
          Length = 224

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +2

Query: 140 GPTPTMRL--SCNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNL 313
           GP  T+     C  C++LR+ C+++C   P   +    E    A+V   K +G + +  +
Sbjct: 35  GPPGTLNTITPCAACKLLRRRCAQECPFSP---YFSPHEPHKFASVH--KVFGASNVSKM 89

Query: 314 INAGTDDSLRPGIFRSLLYEACGRI 388
           +     +S R     SL+YEA  R+
Sbjct: 90  L-MEVPESQRADAANSLVYEANVRL 113

>LBD13_ARATH (Q9AT61) LOB domain protein 13|
          Length = 268

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +2

Query: 140 GPTPTMRLSCNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLIN 319
           G T      C  C++LR+ C+E+C   P   +    E    A V   K +G + +  ++ 
Sbjct: 44  GTTLNTVTPCAACKLLRRRCAEECPFSP---YFSPHEPHKFAAVH--KVFGASNVSKML- 97

Query: 320 AGTDDSLRPGIFRSLLYEA 376
               +S R     SL+YEA
Sbjct: 98  LEVGESQRGDAANSLVYEA 116

>LBD28_ARATH (Q9SCS4) Putative LOB domain protein 28|
          Length = 198

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 167 CNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINA 322
           C  C+ LR+ C+EDC   P     K    +A     + K +G + +  LIN+
Sbjct: 13  CAACKHLRRKCTEDCVFAPYFPSTKLDNYEA-----VHKVFGASHVATLINS 59

>LTBP2_BOVIN (Q28019) Latent transforming growth factor beta-binding protein 2|
           precursor (LTBP-2)
          Length = 1842

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 214 HPPLPAVDQEPRGAGQRHRLP 276
           H P P +DQEP   G RHR P
Sbjct: 416 HLPAPRLDQEPPERGPRHRAP 436

>CO9_ONCMY (P06682) Complement component C9 (Fragment)|
          Length = 574

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 113 SSSTYTLSQGPTPTMRLSCNGCRVLRKGCSEDCS--IRPC 226
           SS  +T   G    +RLSCNG      G  EDC    +PC
Sbjct: 80  SSIEFTCESGACIKLRLSCNGDYDCEDGSDEDCEPVRKPC 119

>LTBP2_MOUSE (O08999) Latent transforming growth factor beta-binding protein 2|
           precursor (LTBP-2)
          Length = 1813

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 214 HPPLPAVDQEPRGAGQRHR 270
           H P+P  D+EP G G RHR
Sbjct: 413 HLPVPQPDREPAGRGSRHR 431

>LBD4_ARATH (Q9SHE9) LOB domain protein 4|
          Length = 172

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +2

Query: 167 CNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDDSLRP 346
           C  C++LR+ C++DC   P   +  + E Q  A V   + +G + +  ++        R 
Sbjct: 14  CAACKLLRRRCAQDCVFSP---YFPADEPQKFANVH--RVFGASNVNKMLQE-LPIHQRG 67

Query: 347 GIFRSLLYEACGRI 388
               S++YEA  R+
Sbjct: 68  DAVSSMVYEANARV 81

>FBIC_STRCO (Q9KZZ7) FO synthase (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase)
          Length = 867

 Score = 24.3 bits (51), Expect(2) = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 309 FMSPARP*NLARKTVALACASGLL 238
           FMSP    ++ARK  AL C   L+
Sbjct: 113 FMSPDEVLDIARKGAALGCKEALI 136



 Score = 23.1 bits (48), Expect(2) = 3.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 361 RAEDAGAEAVVRPGV 317
           R  DAG EA  RPGV
Sbjct: 60  RVRDAGLEAAGRPGV 74

>LBD12_ARATH (Q8LBW3) LOB domain protein 12|
          Length = 193

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = +2

Query: 167 CNGCRVLRKGCSEDCSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDDSLRP 346
           C  C++LR+ C++DC   P       P    +    + K +G + +  ++        R 
Sbjct: 9   CASCKLLRRRCAKDCIFAPYF-----PPDDPHKFAIVHKVFGASNVSKMLQE-LPVHQRA 62

Query: 347 GIFRSLLYEACGRI 388
               SL++EA  R+
Sbjct: 63  DAVNSLVFEANARV 76

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 214 HPPLPAVDQEPRGAGQRHRLPRQVLRPRGAHEPHQRR 324
           HPP P  D       + HR PR  L P      HQ R
Sbjct: 72  HPPRPPQDHHRPTPARDHRDPRDHLPPTRTRRDHQHR 108

>LBD3_ARATH (Q9SA51) LOB domain protein 3|
          Length = 165

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +2

Query: 167 CNGCRVLRKGCSED-CSIRPCLQWIKSPEAQANATVFLAKFYGRAGLMNLINAGTDDSLR 343
           C GC++LR+ C +D C   P       P  +      + K +G + +  ++     ++ R
Sbjct: 15  CAGCKLLRRKCVKDSCVFAPYF-----PAKEPYKFAIVHKIFGASNVNKMLQE-LSENHR 68

Query: 344 PGIFRSLLYEACGRI 388
                S++YEA  RI
Sbjct: 69  SDAVDSMVYEANARI 83

>LBD33_ARATH (Q9LHS8) LOB domain protein 33|
          Length = 177

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 164 SCNGCRVLRKGCSEDCSIRP 223
           SC  C+ LR+ C+ DC   P
Sbjct: 7   SCGACKFLRRKCNRDCVFSP 26

>ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor|
          Length = 1612

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 36  LLSSPSSFWLCRFACLCSRSRAPRDTHPAR 125
           +++ P+ F+L    CLCS SR  ++  P R
Sbjct: 1   MIAEPAHFYLFGLICLCSGSRLRQEDFPPR 30

>ZN516_HUMAN (Q92618) Zinc finger protein 516|
          Length = 1163

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 391 DDPAAGLVEERAEDAGAEAVVRP 323
           D P +GL +E AED+G E    P
Sbjct: 579 DSPGSGLADEAAEDSGEEGAPEP 601

>IGHG1_MOUSE (P01868) Ig gamma-1 chain C region secreted form|
          Length = 324

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +2

Query: 116 SSTYTLSQGPTPTMRLSCN------GCRVLRKGCSEDCSIRPCL 229
           SS+ T+   P P+  ++CN        +V +K    DC  +PC+
Sbjct: 65  SSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCI 108

>DHOM_METGL (P37143) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 435

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 36  LLSSPSSFWLCRFA 77
           LLSSP+S W CRFA
Sbjct: 329 LLSSPTSSWTCRFA 342

>IGH1M_MOUSE (P01869) Ig gamma-1 chain C region, membrane-bound form|
          Length = 393

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +2

Query: 116 SSTYTLSQGPTPTMRLSCN------GCRVLRKGCSEDCSIRPCL 229
           SS+ T+   P P+  ++CN        +V +K    DC  +PC+
Sbjct: 65  SSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCI 108

>RTP1_MOUSE (Q8C8C1) Receptor-transporting protein 1|
          Length = 263

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 116 SSTYTLSQGPTPTMRLSCNGCRVLRKGCSEDCSIRPCLQW 235
           ++TYT S+ P+PT   +  G      GC+  CSI  CL W
Sbjct: 212 ATTYTFSRAPSPTKPQAETG-----SGCN-FCSIPWCLFW 245

>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = +1

Query: 103 QEILIQHVHSVSRTDADDAA*LQRLPRAAEGLQRGLQHPPLPAVDQEPRGAGQRHRLPRQ 282
           +E LIQ +  V R  A     + +L +  + L+     PP P     P    Q+HR   Q
Sbjct: 170 KEELIQSMDRVDREIAKVEQQILKLKKKQQQLEEEAAKPPEPEKPVSPPPVEQKHRSVVQ 229

Query: 283 VL---RPRGAHEPHQRRDG 330
           ++     + A E H+  +G
Sbjct: 230 IIYDENRKKAEEAHKFLEG 248

>TEA1_YEAST (P47988) TY1 enhancer activator|
          Length = 759

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 107 RYSSSTYTLSQGPTPTMRLSCNGCRVLRKGC 199
           R  +   TL+ G +   RL+C  CR  RK C
Sbjct: 50  RSGTGANTLTNGGSTRKRLACTNCRNRRKKC 80

>LTBP2_RAT (O35806) Latent transforming growth factor beta-binding protein 2|
           precursor (LTBP-2)
          Length = 1764

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 214 HPPLPAVDQEPRGAGQRHR 270
           H P+P  D+EP G G +HR
Sbjct: 415 HLPVPQPDREPPGRGSQHR 433


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,468,701
Number of Sequences: 219361
Number of extensions: 719431
Number of successful extensions: 2753
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2746
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)