ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet17d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 43 2e-04
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 40 0.002
3FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 28 6.8

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 22  RLVNAVYVFGDSLVDVSNNDYLPAPAPRANRAHGMDLP-GRPTGRFTNG 165
           + + AV+ FGDS+ D  NN+ L        R +GMD P G  TGRF+NG
Sbjct: 121 KTIPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNG 169



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 22  RLVNAVYVFGDSLVDVSNNDYLPAPAPRANRAHGMDLPGR-PTGRFTNG 165
           + + AV+ FGDS+ D  NN+ L        R +GMD   R  TGRF+NG
Sbjct: 200 KTIPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNG 248



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 34  AVYVFGDSLVDVSNNDYLPAPAPRANRAHGMDLPGRPTGRFTNG 165
           A++ FGDS  D      L A   +A   HG    G P GR+ +G
Sbjct: 30  AIFNFGDSNSDTGG---LSAAFGQAGPPHGSSFFGSPAGRYCDG 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,796,128
Number of Sequences: 219361
Number of extensions: 231799
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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