ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet17d06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds Length = 1282 Score = 230 bits (116), Expect = 1e-57 Identities = 137/144 (95%) Strand = Plus / Plus Query: 82 ccatggcgagcagtggcagcctggccggtctggcggtgctgctcaccggcgtgctgtgcc 141 ||||||||||||| ||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct: 63 ccatggcgagcagcggcgggctggccggtctggcggtgctgctcaccgccgtgctgtgcc 122 Query: 142 tgcagctgccggtccacagccgtgcccagctgcgcgtcgggttctacaacaccacctgcc 201 |||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct: 123 tgcagctgccggtccacagccgcgcgcagctgcgcgtggggttctacaacaccacctgcc 182 Query: 202 ccaacgccgaggccatcgtccggc 225 |||||||||||||||||||||||| Sbjct: 183 ccaacgccgaggccatcgtccggc 206
>emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene) Length = 1398 Score = 58.0 bits (29), Expect = 1e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 183 ttctacaacaccacctgccccaacgccgaggccatcgtccg 223 |||||| |||||| ||||||||||||||||||| ||||||| Sbjct: 168 ttctacgacaccagctgccccaacgccgaggccctcgtccg 208
>ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1071 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 167 ccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212 |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 81 ccagctgcaggtggggttctacaacaccagctgccccaatgccgag 126
>ref|NM_183810.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 174 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223 ||||||||||||||| | | || |||||||||||||||||| ||||||| Sbjct: 70 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 119
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 167 ccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212 |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 12534353 ccagctgcaggtggggttctacaacaccagctgccccaatgccgag 12534398 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 174 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223 ||||||||||||||| | | || |||||||||||||||||| ||||||| Sbjct: 12482977 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 12483026 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Plus Query: 159 agccgtgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 214 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 12547310 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 12547365
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 167 ccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212 |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 45963 ccagctgcaggtggggttctacaacaccagctgccccaatgccgag 46008 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Plus Query: 159 agccgtgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 214 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 58920 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 58975
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 167 ccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212 |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 119968 ccagctgcaggtggggttctacaacaccagctgccccaatgccgag 120013 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 174 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223 ||||||||||||||| | | || |||||||||||||||||| ||||||| Sbjct: 68592 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 68641 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Plus Query: 159 agccgtgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 214 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 132925 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 132980
>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full insert sequence Length = 5938 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 167 ccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212 |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 143 ccagctgcaggtggggttctacaacaccagctgccccaatgccgag 188
>dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001H23, full insert sequence Length = 1382 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 174 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223 ||||||||||||||| | | || |||||||||||||||||| ||||||| Sbjct: 177 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 226
>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for class III peroxidase 14 precursor, exons 1-3 Length = 5620 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 167 ccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212 |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 81 ccagctgcaggtggggttctacaacaccagctgccccaatgccgag 126
>tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx12 gene for class III peroxidase 12 precursor, exons 1-3 Length = 3928 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 174 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223 ||||||||||||||| | | || |||||||||||||||||| ||||||| Sbjct: 70 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 119
>ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1062 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Plus Query: 159 agccgtgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 214 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 76 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 131
>dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107P11, full insert sequence Length = 1271 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Plus Query: 159 agccgtgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 214 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 146 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 201
>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full insert sequence Length = 1492 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Plus Query: 159 agccgtgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 214 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 151 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 206
>dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E07, full insert sequence Length = 1008 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Plus Query: 159 agccgtgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 214 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 149 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 204
>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for class III peroxidase 15 precursor, exons 1-3 Length = 5322 Score = 48.1 bits (24), Expect = 0.012 Identities = 48/56 (85%) Strand = Plus / Plus Query: 159 agccgtgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 214 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 76 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 131
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 gcagtggcagcctggccggtctgg 114 ||||||||||||||| |||||||| Sbjct: 2626548 gcagtggcagcctgggcggtctgg 2626525
>gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-Au1-tagged F protein gene, complete cds Length = 1659 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 acaacaccacctgccccaacgccg 210 |||||||||||||||||| ||||| Sbjct: 1238 acaacaccacctgccccaccgccg 1261
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tgctcaccggcgtgctgtgc 140 |||||||||||||||||||| Sbjct: 4579383 tgctcaccggcgtgctgtgc 4579364
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 cctggccggtctggcggtgctgct 124 ||||||||||||||| |||||||| Sbjct: 952400 cctggccggtctggccgtgctgct 952377
>gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, complete sequence Length = 178778 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 tgctgtgcctgcagctgccggtcc 156 ||||||||||||||||||| |||| Sbjct: 65419 tgctgtgcctgcagctgcccgtcc 65442
>dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-1391J07, complete sequence Length = 121103 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 tgctgtgcctgcagctgccggtcc 156 ||||||||||||||||||| |||| Sbjct: 54446 tgctgtgcctgcagctgcccgtcc 54423
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccggcgtgctgtgcctg 143 ||||| || ||||||||||||||||| ||||| Sbjct: 1363039 tggcgctgttgctcaccggcgtgctgcgcctg 1363070
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccggcgtgctgtgcctg 143 ||||| |||||||||||||| ||||| ||||| Sbjct: 1318620 tggcgctgctgctcaccggcctgctgcgcctg 1318651 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,535,956 Number of Sequences: 3902068 Number of extensions: 1535956 Number of successful extensions: 117818 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116904 Number of HSP's gapped (non-prelim): 914 length of query: 225 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 203 effective length of database: 17,147,199,772 effective search space: 3480881553716 effective search space used: 3480881553716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
