ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet17d04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 170 bits (86), Expect = 2e-39 Identities = 227/274 (82%) Strand = Plus / Plus Query: 115 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 174 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 88573 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 88632 Query: 175 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 234 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 88633 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 88692 Query: 235 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 294 |||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 88693 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 88752 Query: 295 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 354 || |||||||||||| |||| || |||||||||||||||| |||| |||||| || Sbjct: 88753 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 88812 Query: 355 ggggtgtctgaacgacacctgtagcgggttcccg 388 || || || ||||||||||| ||||||||||| Sbjct: 88813 ggcctgcctcaacgacacctgcggcgggttcccg 88846 Score = 165 bits (83), Expect = 1e-37 Identities = 230/279 (82%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 91061 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 91120 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| || Sbjct: 91121 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 91180 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcg 289 ||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| | Sbjct: 91181 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 91240 Query: 290 tccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccg 349 ||||||| |||||||||| | |||| | | |||| || ||||||| ||||| ||| Sbjct: 91241 tccaagccgtgccgcctcaccaagaccggcggctgcttcaacagctgcttcggcgcgcca 91300 Query: 350 tccccggggtgtctgaacgacacctgtagcgggttcccg 388 ||||||| || || |||| |||||| |||||||||||| Sbjct: 91301 tccccggcctgcctcaacggcacctgcagcgggttcccg 91339 Score = 147 bits (74), Expect = 3e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 102448 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 102507 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 102508 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 102567 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 287 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 102568 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 102625 Score = 135 bits (68), Expect = 1e-28 Identities = 227/280 (81%) Strand = Plus / Plus Query: 109 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 168 ||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| Sbjct: 95445 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 95504 Query: 169 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 228 ||| ||||||| ||||| || || |||| ||||||| | ||||| | |||||| Sbjct: 95505 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 95564 Query: 229 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgc 288 |||||||||||||||||| ||||||||| ||| ||||| || ||| |||||||||||| Sbjct: 95565 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 95624 Query: 289 gtccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagcc 348 |||||||| ||||||||||||||||| | ||||| |||||| ||||| ||| | | Sbjct: 95625 gtccaagccttgccgcctcgcgaagagcgccgcctgtgccaccggctgctccggtgcggc 95684 Query: 349 gtccccggggtgtctgaacgacacctgtagcgggttcccg 388 ||||||||| || || ||||||||||| | |||||||||| Sbjct: 95685 gtccccgggctgcctcaacgacacctgcaccgggttcccg 95724
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 170 bits (86), Expect = 2e-39 Identities = 227/274 (82%) Strand = Plus / Plus Query: 115 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 174 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 19487861 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 19487920 Query: 175 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 234 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 19487921 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 19487980 Query: 235 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 294 |||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 19487981 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 19488040 Query: 295 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 354 || |||||||||||| |||| || |||||||||||||||| |||| |||||| || Sbjct: 19488041 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 19488100 Query: 355 ggggtgtctgaacgacacctgtagcgggttcccg 388 || || || ||||||||||| ||||||||||| Sbjct: 19488101 ggcctgcctcaacgacacctgcggcgggttcccg 19488134 Score = 165 bits (83), Expect = 1e-37 Identities = 230/279 (82%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 19490349 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 19490408 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| || Sbjct: 19490409 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 19490468 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcg 289 ||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| | Sbjct: 19490469 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 19490528 Query: 290 tccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccg 349 ||||||| |||||||||| | |||| | | |||| || ||||||| ||||| ||| Sbjct: 19490529 tccaagccgtgccgcctcaccaagaccggcggctgcttcaacagctgcttcggcgcgcca 19490588 Query: 350 tccccggggtgtctgaacgacacctgtagcgggttcccg 388 ||||||| || || |||| |||||| |||||||||||| Sbjct: 19490589 tccccggcctgcctcaacggcacctgcagcgggttcccg 19490627 Score = 147 bits (74), Expect = 3e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 19501736 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 19501795 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 19501796 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 19501855 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 287 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 19501856 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 19501913 Score = 135 bits (68), Expect = 1e-28 Identities = 227/280 (81%) Strand = Plus / Plus Query: 109 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 168 ||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| Sbjct: 19494733 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 19494792 Query: 169 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 228 ||| ||||||| ||||| || || |||| ||||||| | ||||| | |||||| Sbjct: 19494793 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 19494852 Query: 229 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgc 288 |||||||||||||||||| ||||||||| ||| ||||| || ||| |||||||||||| Sbjct: 19494853 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 19494912 Query: 289 gtccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagcc 348 |||||||| ||||||||||||||||| | ||||| |||||| ||||| ||| | | Sbjct: 19494913 gtccaagccttgccgcctcgcgaagagcgccgcctgtgccaccggctgctccggtgcggc 19494972 Query: 349 gtccccggggtgtctgaacgacacctgtagcgggttcccg 388 ||||||||| || || ||||||||||| | |||||||||| Sbjct: 19494973 gtccccgggctgcctcaacgacacctgcaccgggttcccg 19495012
>dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061A08, full insert sequence Length = 1474 Score = 149 bits (75), Expect = 8e-33 Identities = 225/274 (82%), Gaps = 2/274 (0%) Strand = Plus / Plus Query: 115 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 174 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 143 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 202 Query: 175 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 234 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 203 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 262 Query: 235 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 294 ||||||||| | |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 263 ggtggactgag--gccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 320 Query: 295 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 354 || |||||||||||| |||| || |||||||||||||||| |||| |||||| || Sbjct: 321 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 380 Query: 355 ggggtgtctgaacgacacctgtagcgggttcccg 388 || || || ||||||||||| ||||||||||| Sbjct: 381 ggcctgcctcaacgacacctgcggcgggttcccg 414
>dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M15, full insert sequence Length = 1741 Score = 147 bits (74), Expect = 3e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 169 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 327 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 386 Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 229 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 387 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 446 Query: 230 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 287 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 447 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 504
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 1e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 226 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 15504957 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 15505016 Query: 227 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 280 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 15505017 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 15505076 Query: 281 ccgtgcgcgtccaagctgtgccgcctcg 308 || |||| |||||||| |||||||||| Sbjct: 15505077 ccatgcgggtccaagccctgccgcctcg 15505104
>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0689B09 Length = 144932 Score = 61.9 bits (31), Expect = 1e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 226 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 25812 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 25871 Query: 227 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 280 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 25872 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 25931 Query: 281 ccgtgcgcgtccaagctgtgccgcctcg 308 || |||| |||||||| |||||||||| Sbjct: 25932 ccatgcgggtccaagccctgccgcctcg 25959
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 61.9 bits (31), Expect = 1e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 170 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 226 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 154249 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 154308 Query: 227 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 280 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 154309 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 154368 Query: 281 ccgtgcgcgtccaagctgtgccgcctcg 308 || |||| |||||||| |||||||||| Sbjct: 154369 ccatgcgggtccaagccctgccgcctcg 154396
>ref|XM_512475.1| PREDICTED: Pan troglodytes similar to myosin IXB (LOC455819), mRNA Length = 2636 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 tgtggcctgcgccaccagctgc 337 |||||||||||||||||||||| Sbjct: 542 tgtggcctgcgccaccagctgc 521
>ref|NM_004145.2| Homo sapiens myosin IXB (MYO9B), mRNA Length = 7488 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 tgtggcctgcgccaccagctgc 337 |||||||||||||||||||||| Sbjct: 390 tgtggcctgcgccaccagctgc 369
>gb|AC020908.7| Homo sapiens chromosome 19 clone CTD-2528A14, complete sequence Length = 174034 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 tgtggcctgcgccaccagctgc 337 |||||||||||||||||||||| Sbjct: 173127 tgtggcctgcgccaccagctgc 173106
>gb|AC092476.1|AC092476 Homo sapiens chromosome 19 clone LLNLR-231E1, complete sequence Length = 2400 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 tgtggcctgcgccaccagctgc 337 |||||||||||||||||||||| Sbjct: 95 tgtggcctgcgccaccagctgc 74
>dbj|AB209997.1| Homo sapiens mRNA for MYO9B variant protein, partial cds, clone: ef05385 Length = 7607 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 tgtggcctgcgccaccagctgc 337 |||||||||||||||||||||| Sbjct: 537 tgtggcctgcgccaccagctgc 516
>gb|U42391.1|HSU42391 Human myosin-IXb mRNA, complete cds Length = 6069 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 tgtggcctgcgccaccagctgc 337 |||||||||||||||||||||| Sbjct: 390 tgtggcctgcgccaccagctgc 369
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 ctctgccagccagccctcagc 31 ||||||||||||||||||||| Sbjct: 2946487 ctctgccagccagccctcagc 2946467
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 ccgagcgccgtggtgctgccggtga 134 ||||||||||||||||||| ||||| Sbjct: 1844748 ccgagcgccgtggtgctgctggtga 1844772
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 aggtcccggtgacggccgtg 208 |||||||||||||||||||| Sbjct: 3188471 aggtcccggtgacggccgtg 3188490
>emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chromosome 14, complete sequence Length = 239515 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctgccagccagccctcagc 31 |||||||||||||||||||| Sbjct: 131523 tctgccagccagccctcagc 131504
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cgtgctcgtgccgcgcggcc 100 |||||||||||||||||||| Sbjct: 4935908 cgtgctcgtgccgcgcggcc 4935927
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cctacgcgggcgtgccgtgc 286 |||||||||||||||||||| Sbjct: 740360 cctacgcgggcgtgccgtgc 740379
>gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940122D9, complete sequence Length = 114898 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 tggcctgcgccaccagctgc 337 |||||||||||||||||||| Sbjct: 9582 tggcctgcgccaccagctgc 9601
>gb|U18777.1|MAU18777 Mycobacterium avium plasmid pLR7 Rep gene, complete cds Length = 1828 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cctacgcgggcgtgccgtgc 286 |||||||||||||||||||| Sbjct: 288 cctacgcgggcgtgccgtgc 307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,663,093 Number of Sequences: 3902068 Number of extensions: 1663093 Number of successful extensions: 33178 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32810 Number of HSP's gapped (non-prelim): 360 length of query: 388 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 366 effective length of database: 17,147,199,772 effective search space: 6275875116552 effective search space used: 6275875116552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
