ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet17c07 |
|---|---|
| Clone Library Name | barley_pub |
>DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100 precursor| Length = 372 Score = 30.8 bits (68), Expect = 0.83 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 9/110 (8%) Frame = +2 Query: 77 AIQRFKNTITSDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTV----TSVIFDGF 244 A+ FK++++ + +TW+ + C Y G +C G+ +++++ IF Sbjct: 34 ALNAFKSSLSEPNLGIFNTWSENTDCCKEWY-GISCDPDSGRVTDISLRGESEDAIFQKA 92 Query: 245 GLCSPMQQDLVDELPDL----ALFQASSNNFGGEV-PILTGLSYMYMLDV 379 G M + + DL +L A GE+ P +T L+ + +LD+ Sbjct: 93 GRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDL 142
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 25.0 bits (53), Expect(2) = 1.4 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = +3 Query: 222 HQSFSMALVCVHRCNKILSTSFPTLHSSRLPPTTSAAK 335 HQ+ + A H+ + S P H+ LPP+ A+ Sbjct: 1528 HQAAAAAAALHHQSMLLTSPGLPPQHAISLPPSAGGAQ 1565 Score = 23.5 bits (49), Expect(2) = 1.4 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 85 AIQEHHHLRPQKRNQHLDRPRHLRHDELPRLQ 180 A Q HL+ Q+ QHL + +HL + P Q Sbjct: 1496 AQQAQQHLQ-QQAQQHLQQQQHLAQQQHPHQQ 1526
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +2 Query: 113 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT---VTSVIFDGFGLCSPMQQDLVD- 280 P + +W G+D C T+++G C + +L +T I FG +Q+ ++ Sbjct: 338 PPRLAESWKGNDPC--TNWIGIACSNGNITVISLEKMELTGTISPEFGAIKSLQRIILGI 395 Query: 281 ------------ELPDLALFQASSNNFGGEVP 340 LP+L SSN G+VP Sbjct: 396 NNLTGMIPQELTTLPNLKTLDVSSNKLFGKVP 427
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +1 Query: 55 AALPCILRHPAIQEHHHLRPQKRNQHLDRPRH 150 AALP HP HHH P + + H P H Sbjct: 999 AALPPAHHHPPHHHHHHAPPPQPHHHHAHPPH 1030
>V70K_OYMV (P20130) 66 kDa protein| Length = 597 Score = 29.6 bits (65), Expect = 1.9 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +3 Query: 156 PRRATSASTAGHRMD--RRVTSR*HQSFSMALV---CVHRCNKILSTSFPTLHSSRLPPT 320 P + + S GH + R + Q MAL+ C H + S SFP H S LPP Sbjct: 444 PTCSPTTSNHGHPEEALRFLPKNLPQHCQMALMENYCSHFSSPSSSVSFPEDHQSSLPPI 503 Query: 321 TSAAKSLSSPDLA 359 ++ SSP + Sbjct: 504 STRWVQCSSPSFS 516
>3MGH_STAAW (P65416) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAS (Q6G6X6) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAR (Q6GE90) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAN (P65415) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAM (P65414) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAC (Q5HDL2) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>YRPE_BACSU (O05410) Hypothetical protein yrpE| Length = 251 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +2 Query: 8 HQHSSSYPQPRDFPSEQLYHAYFAIQRFKNTITSD 112 H+HS + D +E++Y YF + K+ + SD Sbjct: 59 HEHSHDHSHAHDEETEKIYEGYFKNSQVKDRLLSD 93
>CHRA_PSEAE (P14285) Chromate transport protein| Length = 416 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = -2 Query: 255 EHRPKPSKMTDVTVRLLACPCGAPQLKPR*LVVAQMSWPVQVLVTFLGSEVMVFLNRWMA 76 E +PSK TD T + P PQL R L ++W V + +V RW++ Sbjct: 6 EESYRPSKATDATTEAVPPPMSYPQLFARFLKFGLLAWGGPVAQIDMLRRELVDEERWIS 65
>ZNF92_HUMAN (Q03936) Zinc finger protein 92 (Zinc finger protein HTF12)| Length = 586 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +2 Query: 119 NVTSTWTGHDICATT--SYLGFNCGAPHGQASNLTVTSVIFDG 241 N +S +T H I T SY CG Q+SNLT +I+ G Sbjct: 491 NQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTG 533
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/77 (28%), Positives = 33/77 (42%) Frame = +2 Query: 107 SDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIFDGFGLCSPMQQDLVDEL 286 SDP S+W+ ++ +LG +C A SN V SV F L P ++ L Sbjct: 36 SDPAQSLSSWSDNNDVTPCKWLGVSCDA----TSN--VVSVDLSSFMLVGPF-PSILCHL 88 Query: 287 PDLALFQASSNNFGGEV 337 P L +N+ G + Sbjct: 89 PSLHSLSLYNNSINGSL 105
>CTXA_CHIQU (P58762) Toxin A precursor (CqTX-A)| Length = 462 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = +2 Query: 26 YPQPRDFPSEQLYHAYFAIQ-----RFKNTITSDPKNVTSTWTGHDICATTSYLGFNCGA 190 YP+ R+ S++++ + ++ R K +T + W + +C++ YL C Sbjct: 293 YPRERNEQSQKIFKFFDLMKVKYDDRLKQDLTGIQVFSSLHWPNYFLCSSKDYLALICTK 352 Query: 191 PHG 199 P+G Sbjct: 353 PYG 355
>VTS1_EMENI (Q5BGC4) Protein vts1| Length = 611 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = +2 Query: 113 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTS 226 P NV ++W T+ G GAPH Q S++ + Sbjct: 332 PYNVNASWASMTNTPMTATFGSQLGAPHQQGSDMVANA 369
>NU157_YEAST (P40064) Nucleoporin NUP157 (Nuclear pore protein NUP157)| Length = 1391 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 239 GFGLCSPMQQDLVDELPDLALFQASSNNFGGEVPILTGLSYMYM 370 G G +P Q+ V +PD L Q S+ ++ I L+Y ++ Sbjct: 131 GLGAFTPFQRQQVTNIPDEVLSQVSNTEIKSDMGIFLELNYCWI 174
>ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B| Length = 257 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +3 Query: 189 HRMDRRVTSR*HQSFSMALVCVHRCNKILSTSFPTLHSSRLPPTTSAAKSLSSPDLATCT 368 H +D + HQ+ L + R + STS S LP +S++ S ++P L T T Sbjct: 128 HPLDHECSGEGHQTSRAGLAAISRAQGLASTSTAPSPSRTLP--SSSSPSRATPQLPTRT 185
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 28.1 bits (61), Expect = 5.4 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Frame = +2 Query: 77 AIQRFKNTITSDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIFDGFGLCS 256 A+ KN++ +DP V +W + T + C S+ +VT V L Sbjct: 31 ALSALKNSL-ADPNKVLQSWDATLVTPCT-WFHVTCN------SDNSVTRVDLGNANLSG 82 Query: 257 PMQQDLVDELPDLALFQASSNNFGGEVPILTG-LSYMYMLDV 379 + L +LP+L + SNN G +P G L+ + LD+ Sbjct: 83 QLVMQL-GQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDL 123
>POLN_EEVVC (Q8V294) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2496 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 222 HQSFSMALVCVHRCNKILSTSFPTLHSSRLPPTTSAAKSLSSPDLATC 365 +++FS V V CN +L +FPT+ S + P A L D A+C Sbjct: 2000 NRAFSSPKVAVEACNVVLKENFPTVASYCIIPEYDA--YLDMVDGASC 2045
>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1) Length = 1143 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/79 (25%), Positives = 30/79 (37%) Frame = +2 Query: 89 FKNTITSDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIFDGFGLCSPMQQ 268 FK I DP N+ S W+ + + G C VT + G GL + Sbjct: 46 FKTMIQDDPNNILSNWSPRK--SPCQFSGVTCLGGR-------VTEINLSGSGLSGIVSF 96 Query: 269 DLVDELPDLALFQASSNNF 325 + L L++ + S N F Sbjct: 97 NAFTSLDSLSVLKLSENFF 115
>RDRP_ORSVS (Q84133) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -1 Query: 220 HREVTRLSMRCPA 182 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961
>RDRP_ORSVC (P89659) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -1 Query: 220 HREVTRLSMRCPA 182 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961
>POLN_EEVVM (Q9WJC7) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2498 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 222 HQSFSMALVCVHRCNKILSTSFPTLHSSRLPPTTSAAKSLSSPDLATC 365 +++FS V V CN +L +FPT+ S + P A L D A+C Sbjct: 2002 NRAFSSPKVAVEACNVVLKENFPTVASYCIIPEYDA--YLDMVDGASC 2047
>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 222 HQSFSMALVCVHRCNKILSTSFPTLHSSRLPPTTSAAKSLSSPDLATC 365 +++FS V V CN +L +FPT+ S + P A L D A+C Sbjct: 1996 NRAFSSPKVAVEACNAMLKENFPTVASYCIIPEYDA--YLDMVDGASC 2041
>POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 222 HQSFSMALVCVHRCNKILSTSFPTLHSSRLPPTTSAAKSLSSPDLATC 365 +++FS V V CN +L +FPT+ S + P A L D A+C Sbjct: 1996 NRAFSSPKVAVEACNAMLKENFPTVASYCIIPEYDA--YLDMVDGASC 2041
>POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2485 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 222 HQSFSMALVCVHRCNKILSTSFPTLHSSRLPPTTSAAKSLSSPDLATC 365 +++FS V V CN +L +FPT+ S + P A L D A+C Sbjct: 1989 NRAFSSPKVAVEACNAMLKENFPTVASYCIIPEYDA--YLDMVDGASC 2034
>POLN_EEEVF (Q4QXJ8) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2493 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +3 Query: 228 SFSMALVCVHRCNKILSTSFPTLHSSRLPPTTSAAKSLSSPDLATC 365 SFS A V V CN +L +FPT+ S + T L D A+C Sbjct: 1999 SFSSAEVAVKVCNLVLQENFPTVASYNI--TDEYDAYLDMVDGASC 2042
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +3 Query: 237 MALVCVHRCNKILSTSFPTLHSSRLPPTTSAAKSLS 344 M++ C++R + + TSF LHSS +P T+ + S S Sbjct: 1 MSIDCLYRRSSLFDTSFVPLHSS-IPATSKMSASNS 35
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/27 (37%), Positives = 11/27 (40%) Frame = +1 Query: 79 HPAIQEHHHLRPQKRNQHLDRPRHLRH 159 HP HHH P + HL H H Sbjct: 97 HPHPHHHHHHHPPHHHHHLGHHHHHHH 123 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +1 Query: 82 PAIQEHHHLRPQKRNQHLDRPRHLRH 159 P +EHHH P + H P H H Sbjct: 88 PHHEEHHHHHPHPHHHHHHHPPHHHH 113
>YD3M_HERAU (P25280) Hypothetical 68.4 kDa protein in HgiDIIM 3'region (ORF68)| Length = 611 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 32 QPRDFPSEQLYHAYFA 79 +P D P+EQ YH YFA Sbjct: 259 RPSDIPNEQPYHIYFA 274
>DPOD2_XENLA (O93610) DNA polymerase delta subunit 2 (EC 2.7.7.7) (XlCDC1)| Length = 463 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = +1 Query: 64 PCILRHPAIQEHHHLRPQKRNQHL--DRPRHLRHDELPRLQLRG 189 P ILR I E H+L PQ Q D + DEL R++L G Sbjct: 105 PSILRE--ISEEHNLLPQPARQKYISDSDELILEDELQRIKLEG 146
>PPA1_ASPNG (P20584) Phosphate-repressible acid phosphatase precursor (EC| 3.1.3.2) (Acid phosphatase PII) Length = 436 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +1 Query: 43 LPKRAALPCILRHPAIQEHHHLRPQKRNQHLDRPRHLRH 159 L RA P IL P ++ H L PQ++ H P H RH Sbjct: 399 LSSRATAPSIL--PPCEQQHLLCPQRQVHH---PHHQRH 432
>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)| (dPAS1) Length = 1027 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/37 (35%), Positives = 25/37 (67%) Frame = +1 Query: 91 QEHHHLRPQKRNQHLDRPRHLRHDELPRLQLRGTAWT 201 Q HHH++ Q+++Q+ + +H +H +L + QL+ T T Sbjct: 546 QSHHHMQQQQQHQN-QQQQHQQHQQLQQ-QLQHTVGT 580
>UVRC_THET8 (Q5SI32) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 590 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = +1 Query: 46 PKRAALPCILRHPAIQEHHHLRPQKRNQHLDRPRHLRHDELPRLQLRGTAWTGE 207 P+ L L HPA+Q HLR + L R R +EL R+ L+G GE Sbjct: 490 PEGRELRLPLTHPALQLLIHLRDEAHQNGLRYHRKRRSEELFRV-LQGIPGIGE 542
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +1 Query: 76 RHPAIQEHHH---LRPQKRNQHLDRPRHLRHDE 165 +HP Q+HHH L PQ+ +Q P L H + Sbjct: 297 QHPHHQQHHHPHLLLPQQHHQQAVAPLPLAHHQ 329 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,478,643 Number of Sequences: 219361 Number of extensions: 1135874 Number of successful extensions: 3489 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 3366 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3486 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
