ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet17b09 |
|---|---|
| Clone Library Name | barley_pub |
>S17P_WHEAT (P46285) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 393 Score = 186 bits (471), Expect = 2e-47 Identities = 93/95 (97%), Positives = 94/95 (98%) Frame = +1 Query: 100 TRSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCA 279 TRSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCA Sbjct: 15 TRSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCA 74 Query: 280 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIALR 384 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIA + Sbjct: 75 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFK 109
>S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 387 Score = 71.6 bits (174), Expect = 4e-13 Identities = 36/72 (50%), Positives = 49/72 (68%) Frame = +1 Query: 169 ATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCAIGDSLEEFLTKATPDKNLIRLLI 348 ++S +GESLR T + + A ++L T+C +GDSLEEFL KAT DK LIRL++ Sbjct: 37 SSSLFGESLRMTTKSSV-----RVNKAKNSSLVTKCELGDSLEEFLAKATTDKGLIRLMM 91 Query: 349 CMGEAMRTIALR 384 CMGEA+RTI + Sbjct: 92 CMGEALRTIGFK 103
>S17P_ARATH (P46283) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 393 Score = 66.6 bits (161), Expect = 1e-11 Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Frame = +1 Query: 103 RSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALT-TRCA 279 RS + S+S S K + ++S +G+SLR ++ A +KA S A T T+C Sbjct: 21 RSSTLVSPPSYSTSSSFKRLK-SSSIFGDSLRL-APKSQLKA---TKAKSNGASTVTKCE 75 Query: 280 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIALR 384 IG SLEEFL +ATPDK L LL+CMGEA+RTIA + Sbjct: 76 IGQSLEEFLAQATPDKGLRTLLMCMGEALRTIAFK 110
>S17P_CHLRE (P46284) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 389 Score = 52.0 bits (123), Expect = 3e-07 Identities = 31/74 (41%), Positives = 45/74 (60%) Frame = +1 Query: 157 AARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCAIGDSLEEFLTKATPDKNLI 336 A+ A++F G ++ A ++ A QS+ R A+ T+ IGDSL EFL +ATPD L Sbjct: 37 ASANASAFKGAAVTARVKASTRAARVQSR---RTAVLTQAKIGDSLAEFLVEATPDPKLR 93 Query: 337 RLLICMGEAMRTIA 378 +++ M EA RTIA Sbjct: 94 HVMMSMAEATRTIA 107
>COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)| (180 kDa bullous pemphigoid antigen 2) Length = 1431 Score = 32.3 bits (72), Expect = 0.28 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP 305 G+ G+ VPG + GG S G YR+ P G P Sbjct: 948 GDQGDPGVPGTPGIPGGHSHGESSSTTYRQGPPGPP 983
>EM3_WHEAT (Q08000) Em protein H2| Length = 93 Score = 31.6 bits (70), Expect = 0.48 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDD 374 GE VVPGG GG+S AH + R GG + G+E + GG +D Sbjct: 18 GETVVPGGT---GGKSLEAHENLAEGRSRGGQTRREQMGEEGYSEMGRKGGLSTND 70
>LE19B_HORVU (P46532) Late embryogenesis abundant protein B19.1B| Length = 93 Score = 31.2 bits (69), Expect = 0.63 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDD 374 GE VVPGG GG+S AH + R GG + G+E + GG +D Sbjct: 18 GETVVPGGT---GGKSLEAHDNLAEGRSRGGQTRREQMGEEGYSEMGRKGGLSTND 70
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)| (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 30.8 bits (68), Expect = 0.82 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP 305 G+ G+ VPG + GG S GA Y + P G P Sbjct: 951 GDQGDPGVPGTPGISGGLSHGASSSTLYMQGPPGPP 986
>DBPA_HUMAN (P16989) DNA-binding protein A (Cold shock domain-containing| protein A) (Single-strand DNA-binding protein NF-GMB) Length = 372 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 186 RVAAGEHGE--DVVPGGEAVQGGESRGAHHPVRYRR----QPGGVPDQGDAGQEPHQAA 344 R+ AGE GE D VP G +QG R + RYR +P P G+A + +Q A Sbjct: 258 RIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQA 316
>NCKX1_BOVIN (Q28139) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1216 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGG---G 362 A GE+GE GG+A GGES G G +P + E GG G Sbjct: 758 AEGENGER--SGGDAALGGESEGKAE----NESEGDIPAERRGDDEDEGEIQAEGGEVKG 811 Query: 363 DEDD 374 DED+ Sbjct: 812 DEDE 815
>LE19A_HORVU (Q05190) Late embryogenesis abundant protein B19.1A (B19.1)| Length = 93 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDD 374 GE VVPGG GG+S A + R GG + GQE + GG +D Sbjct: 18 GETVVPGGT---GGKSLEAQQNLAEGRSRGGQTRREQMGQEGYSEMGRKGGLSSND 70
>CD2A2_MONDO (O77618) Cyclin-dependent kinase inhibitor 2A, isoform 2 (p19ARF)| Length = 155 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Frame = +3 Query: 174 LVLRRVAAGEHGED---VVPGGE--AVQGGESRGAH---HPVRYRRQPGGVPDQGDAGQE 329 +V ++ G G D PG AV+GG HP RR PGG+P DA Sbjct: 49 IVRKKRHRGRSGHDDGQCTPGSNPVAVRGGTQHPRPDNPHPASPRRCPGGLPGHSDAAPS 108 Query: 330 PHQAADLHG 356 AA G Sbjct: 109 GRGAAGCQG 117
>NCKX1_BISBI (O46383) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) (Fragment) Length = 300 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGG---G 362 A GE+GE GG+A GGES G G +P + E GG G Sbjct: 26 AEGENGER--SGGDAALGGESEGKAE----NESEGDIPAERRGDDEDEGEIQAEGGEVKG 79 Query: 363 DEDD 374 DED+ Sbjct: 80 DEDE 83
>SEEP_RAPSA (P11573) Late seed maturation protein P8B6| Length = 83 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/55 (36%), Positives = 24/55 (43%) Frame = +3 Query: 207 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDED 371 GE VVPGG GG+S A + R GG + G E +Q GG D Sbjct: 17 GETVVPGGT---GGKSFEAQQHLAEGRSRGGNTRKEQLGSEGYQQMGRKGGSTPD 68
>AROB_XANAC (Q8PI87) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 370 Score = 29.6 bits (65), Expect = 1.8 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +1 Query: 136 SQSYRPKAARPATSFYGESLRANTAR-TSFPAGRQSKAASRAALTTRCAIGDSLEEFLTK 312 S+S A+P T L A+ AR S GR + S + + A G + L++ Sbjct: 7 SRSVDVDGAQPYTITIAPGLLADGARLASHVRGRHALLLSDSQVAPHYAAG--VRAALSR 64 Query: 313 ATPDKNLIRLLICMGEAMRTI 375 A PD + L+I GEA +T+ Sbjct: 65 ARPDLQVGELVIAAGEASKTL 85
>SOX10_HUMAN (P56693) Transcription factor SOX-10| Length = 466 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Frame = +3 Query: 183 RRVAAGEHGEDVVPGGEAVQGGESR-GAHHPVRY--RRQPGGVPDQGDAGQEPHQAADLH 353 R+ GE PGGEA QGG + AH+ + R PG D G H + H Sbjct: 178 RKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSD-GNPEHPSGQSH 236 Query: 354 G 356 G Sbjct: 237 G 237
>SODC_HORSE (P00443) Superoxide dismutase [Cu-Zn] (EC 1.15.1.1)| Length = 153 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Frame = +3 Query: 162 QAGDLVLRR----VAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 329 + G +VL+ + G+HG V G+ QG + GAH ++ G ++ G Sbjct: 25 EGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDL 84 Query: 330 PHQAADLHGGGDED 371 + AD +G D D Sbjct: 85 GNVTADENGKADVD 98
>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50| Length = 552 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 279 YRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLK 383 ++ GGVPD +AG + ++D DEDD L+ Sbjct: 181 FQHAMGGVPDWAEAGSKRRTSSDDESEEDEDDLLQ 215
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 329 R A GE GE PG + G P QPG +QG+AGQ+ Sbjct: 749 RGAPGERGETGPPGTSGIAG--------PPGADGQPGAKGEQGEAGQK 788
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = +3 Query: 222 PG-GEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLK 383 PG G +G E RG PGG+ G HQ HG GDE DR++ Sbjct: 1043 PGRGHVGRGEEGRGVG--------PGGLAGAGPVHAVAHQRR--HGAGDEGDRVR 1087
>ZN687_MOUSE (Q9D2D7) Zinc finger protein 687| Length = 1237 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYR 284 + E + P ++++GG G H P+RYR Sbjct: 1086 SCSEEPDSTTPPAKSLRGGPGSGGHGPLRYR 1116
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/48 (39%), Positives = 21/48 (43%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 329 R A GE GE PG G P QPG DQG+AGQ+ Sbjct: 750 RGAPGERGETGPPGPAGFAG--------PPGADGQPGAKGDQGEAGQK 789
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQ 326 R AAGE G D VPGG ++G G+ +PG QG++G+ Sbjct: 518 RGAAGEPGRDGVPGGPGMRG--MPGSPGGPGSDGKPGPPGSQGESGR 562
>MARCS_BOVIN (P12624) Myristoylated alanine-rich C-kinase substrate (MARCKS)| (ACAMP-81) Length = 331 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGA-HHPVRYRRQPGGVPDQGDAGQEPHQA 341 A+ E G+D GG A GE+ A P + ++G AG +P +A Sbjct: 188 ASAEGGKDEASGGAAAAAGEAGAAPGEPTAAPGEEAAAGEEGAAGGDPQEA 238
>RNB_HHV1M (P56958) RNA-binding protein (Vmw21)| Length = 161 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/50 (34%), Positives = 19/50 (38%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAAD 347 G DV G G RG H P + R G P +GD Q Q D Sbjct: 11 GPGDPDVYLKGVPSAGMHPRGVHAPRGHPRMISGPPQRGDNDQAAGQCGD 60
>RNB_HHV11 (P04487) RNA-binding protein (Vmw21)| Length = 161 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/50 (34%), Positives = 19/50 (38%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAAD 347 G DV G G RG H P + R G P +GD Q Q D Sbjct: 11 GPGDPDVYLKGVPSAGMHPRGVHAPRGHPRMISGPPQRGDNDQAAGQCGD 60
>EM2_WHEAT (P22701) Em protein CS41| Length = 94 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/75 (30%), Positives = 32/75 (42%) Frame = +3 Query: 150 AQGCQAGDLVLRRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 329 A G + G L +A G+ VVPGG GG+S A + R GG + G+E Sbjct: 2 ASGQEKGRSELDSLA--REGQTVVPGGT---GGKSYEAQEKLAEGRSRGGQTRKEQMGEE 56 Query: 330 PHQAADLHGGGDEDD 374 + GG +D Sbjct: 57 GYSEMGRKGGLSTND 71
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +1 Query: 130 SFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCAIGDSL 294 S +Q P+A+ P + E+LR + R P A+R T CA D+L Sbjct: 747 SCAQRDNPRASSPNRTIQQENLRTSCTRQDNPRTSSPNRATRDNPRTSCAQRDNL 801
>PAWR_HUMAN (Q96IZ0) PRKC apoptosis WT1 regulator protein (Prostate apoptosis| response-4 protein) (Par-4) Length = 340 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = +3 Query: 159 CQAGDLVLRRVAAG-EHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQG 314 C G +L R A G ED P A A P R +P GVP++G Sbjct: 91 CAVGSAMLTRAAPGPRRSEDEPPAASA------SAAPPPQRDEEEPDGVPEKG 137
>AROB_XANOR (Q5H3H4) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 370 Score = 27.7 bits (60), Expect = 7.0 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = +1 Query: 136 SQSYRPKAARPATSFYGESLRANTARTS-FPAGRQSKAASRAALTTRCAIGDSLEEFLTK 312 S+S A+P T L A+ AR + GR + S + + A G + L Sbjct: 7 SRSVAVDGAQPYTITIAPGLLADDARLARHVRGRHALLLSDSQVAPHYAAG--VRAALLS 64 Query: 313 ATPDKNLIRLLICMGEAMRTI 375 A PD + L+I GEA +T+ Sbjct: 65 ARPDLQIGELVIAAGEASKTL 85
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 7/63 (11%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQG-------GESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHG 356 G GE +PGG G S G P PG V G+AG++ H D Sbjct: 868 GTRGERGLPGGPGSNGEPGPSGLAGSSGPRGPPGSVGSPGPVGHSGEAGRDGHPGNDGPP 927 Query: 357 GGD 365 G D Sbjct: 928 GRD 930
>GLYG2_HUMAN (O15488) Glycogenin-2 (EC 2.4.1.186) (GN-2) (GN2)| Length = 501 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 276 RYRRQPGGVPDQGDAGQEPHQAADLH 353 +Y Q G V +QG HQAA LH Sbjct: 256 KYNPQSGSVLEQGSVSSSQHQAAFLH 281
>CU19_ARADI (P80515) Adult-specific rigid cuticular protein 11.9 (ACP 11.9)| Length = 120 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%) Frame = +3 Query: 195 AGEHGEDVVPGGEAVQGG----ESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAA 344 AG H G +V G ++ G V+Y PGG GD G + AA Sbjct: 21 AGGHSRVESGSGSSVAGSYSYVDANGDRRTVQYTAGPGGYQASGDVGVDRRTAA 74
>SOX18_MOUSE (P43680) Transcription factor SOX-18| Length = 377 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 106 SPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPA 228 +P CA +F Y P+ AR + YG L A RT+ PA Sbjct: 230 APEDCALRAFRAPYAPELARDPSFCYGAPL-AEALRTAPPA 269
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/48 (39%), Positives = 21/48 (43%) Frame = +3 Query: 186 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 329 R A GE GE PG G P QPG DQG+AGQ+ Sbjct: 790 RGAPGEPGETGPPGPAGFAG--------PPGADGQPGAKGDQGEAGQK 829
>DYNA_DROME (P13496) 150 kDa dynein-associated polypeptide (DP-150) (DAP-150)| (Protein glued) Length = 1265 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +1 Query: 151 PKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTT 270 P AA+P + R +++RTS + RQS SR LTT Sbjct: 94 PTAAQPTKA------RLSSSRTSLSSSRQSLLGSRTQLTT 127
>SOX10_MOUSE (Q04888) Transcription factor SOX-10 (SOX-21) (Transcription factor| SOX-M) Length = 466 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Frame = +3 Query: 183 RRVAAGEHGEDVVPGGEAVQGGES------RGAHHPVRYRRQPGGVPDQGDAGQEPHQAA 344 R+ GE PGGEA QGG + + AH R+ + + D G H + Sbjct: 178 RKNGKAAQGEAECPGGEAEQGGAAAIQAHYKSAHLDHRHPEEGSPMSD----GNPEHPSG 233 Query: 345 DLHG 356 HG Sbjct: 234 QSHG 237
>LON3_CAEEL (Q23628) Cuticle collagen lon-3 precursor| Length = 324 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGG 359 G G+D PG ++G + A PV + Q G +QG G+E D G Sbjct: 212 GAPGDDGAPGASGMKGDD---AEKPVGRQGQRGQPGEQGPDGEEGPAGKDAFEG 262
>EXT2_HUMAN (Q93063) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT2) (Multiple exostoses protein Length = 718 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +3 Query: 255 RGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGG 362 RG +H + + PGG PD A P A L GGG Sbjct: 182 RGTNH-LLFNMLPGGPPDYNTALDVPRDRALLAGGG 216
>EXT2_BOVIN (O77783) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (HS-polymerase) (HS-POL) (Multiple exostoses protein 2 homolog) Length = 718 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +3 Query: 255 RGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGG 362 RG +H + + PGG PD A P A L GGG Sbjct: 182 RGTNH-LLFNMLPGGPPDYNTALDVPRDRALLAGGG 216
>ZN687_HUMAN (Q8N1G0) Zinc finger protein 687| Length = 1237 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +3 Query: 192 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYR 284 + E + P ++ +GG G H P+RYR Sbjct: 1085 SCSEEPDSTTPPAKSPRGGPGSGGHGPLRYR 1115
>CLIC6_RAT (Q811Q2) Chloride intracellular channel 6| Length = 612 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 234 AVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 365 + QGGE G V RR+ G ++GD GQE + G D Sbjct: 348 SAQGGEELGR---VNGRRENGPASEEGDLGQEHDITLFVKAGSD 388
>CD9_BOVIN (P30932) CD9 antigen| Length = 225 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = +1 Query: 121 AAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCAIGDSLEE 300 AA + S++ + + FY ++ N + R++ A AL C + E+ Sbjct: 102 AAAIWGYSHKEEVIKEVQKFYEDTY--NKLKNKDEPQRETLKAIHIALDC-CGLTGVPEQ 158 Query: 301 FLTKATPDKNLI 336 FLT P KNLI Sbjct: 159 FLTDTCPPKNLI 170
>ARGC_MYCLE (Q9CC15) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 323 SGVALVRNSSRLSPIAHRVVSAARLAALDCLPAGNDVL 210 SG L + L+P+AHRV+ + L L AG+DV+ Sbjct: 46 SGDTLGEHHPHLTPLAHRVLESTELTVL----AGHDVV 79
>SODC_XIPGL (P03946) Superoxide dismutase [Cu-Zn] (EC 1.15.1.1)| Length = 151 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/61 (26%), Positives = 26/61 (42%) Frame = +3 Query: 174 LVLRRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLH 353 ++L+ + GEHG V G+ G S G H ++ G + G + AD + Sbjct: 33 IILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADAN 92 Query: 354 G 356 G Sbjct: 93 G 93
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 13/55 (23%) Frame = +3 Query: 198 GEHGEDVVPGGEAVQG-----GE--------SRGAHHPVRYRRQPGGVPDQGDAG 323 GE G +PGG+ +G GE +RGAH V G D+G+AG Sbjct: 643 GERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAHGAVGAPGPAGATGDRGEAG 697
>CLIC6_MOUSE (Q8BHB9) Chloride intracellular channel 6| Length = 596 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +3 Query: 234 AVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 329 +VQGGE G V RR+ G ++GD GQE Sbjct: 332 SVQGGEELGR---VNGRRENGPALEEGDPGQE 360
>IR09_HCMVA (P16807) Hypothetical protein IRL9 (TRL9)| Length = 143 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/64 (29%), Positives = 28/64 (43%) Frame = +3 Query: 183 RRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGG 362 RR G G+ G EA + YR+ PG + ++ GQ+P D +G Sbjct: 75 RRSGRGPVGD----GREASRTAAEEKRRRKENYRQGPGFLLEKQHVGQDP----DANGNH 126 Query: 363 DEDD 374 D+DD Sbjct: 127 DDDD 130 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,602,123 Number of Sequences: 219361 Number of extensions: 581615 Number of successful extensions: 2614 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 2509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2606 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
