ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet17b08 |
|---|---|
| Clone Library Name | barley_pub |
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 109 bits (272), Expect = 2e-24 Identities = 50/66 (75%), Positives = 50/66 (75%) Frame = +1 Query: 118 MAQRDKKDQEPTELRAPEITLCANSCGFPGNPATQNLCQNCFXXXXXXXXXXXXXXXXVL 297 MAQRDKKDQEPTELRAPEITLCANSCGFPGNPATQNLCQNCF VL Sbjct: 1 MAQRDKKDQEPTELRAPEITLCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPVL 60 Query: 298 DKQPPR 315 DKQPPR Sbjct: 61 DKQPPR 66
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 38.9 bits (89), Expect = 0.003 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +1 Query: 178 LCANSCGFPGNPATQNLCQNCF 243 LC N+CGF G+ AT NLC NC+ Sbjct: 15 LCVNNCGFFGSSATMNLCSNCY 36
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 37.0 bits (84), Expect = 0.011 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 136 KDQEPTELRAPEITLCANSCGFPGNPATQNLCQNCF 243 ++ T E LC N CGF G+P+ NLC C+ Sbjct: 4 EENNSTSFPPTEPKLCDNGCGFFGSPSNMNLCSKCY 39
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 35.8 bits (81), Expect = 0.025 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 136 KDQEPTELRAPEITLCANSCGFPGNPATQNLCQNCF 243 + + T E LC CGF G+P+ NLC C+ Sbjct: 4 EQNDSTSFSPSEPKLCVKGCGFFGSPSNMNLCSKCY 39
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 34.3 bits (77), Expect = 0.072 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 160 RAPEITLCANSCGFPGNPATQNLCQNCF 243 + P LC+ CGF GNP T +C C+ Sbjct: 7 QTPGPMLCSTGCGFYGNPRTNGMCSVCY 34
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 34.3 bits (77), Expect = 0.072 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 160 RAPEITLCANSCGFPGNPATQNLCQNCF 243 + P LC+ CGF GNP T +C C+ Sbjct: 7 QTPGPMLCSTGCGFYGNPRTNGMCSVCY 34
>RABX5_MOUSE (Q9JM13) Rab5 GDP/GTP exchange factor (Rabex-5)| Length = 491 Score = 32.3 bits (72), Expect = 0.27 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 178 LCANSCGFPGNPATQNLCQNCF 243 LC CG+ GNPA Q C C+ Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCW 39
>RABX5_BOVIN (O18973) Rab5 GDP/GTP exchange factor (Rabex-5)| Length = 492 Score = 32.3 bits (72), Expect = 0.27 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 178 LCANSCGFPGNPATQNLCQNCF 243 LC CG+ GNPA Q C C+ Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCW 39
>RABX5_HUMAN (Q9UJ41) Rab5 GDP/GTP exchange factor (Rabaptin 5-associated| exchange factor for Rab5) (Rabex-5) Length = 708 Score = 32.3 bits (72), Expect = 0.27 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 178 LCANSCGFPGNPATQNLCQNCF 243 LC CG+ GNPA Q C C+ Sbjct: 156 LCKKGCGYYGNPAWQGFCSKCW 177
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +1 Query: 193 CGFPGNPATQNLCQNCF 243 CGF G+ T NLC CF Sbjct: 20 CGFWGSSKTMNLCSKCF 36
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +1 Query: 193 CGFPGNPATQNLCQNCF 243 CGF G+ T NLC CF Sbjct: 20 CGFWGSSKTMNLCSKCF 36
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +1 Query: 193 CGFPGNPATQNLCQNCF 243 CGF G+ T NLC CF Sbjct: 20 CGFWGSSKTMNLCSKCF 36
>YICE_SHIFL (P0AGN2) Putative purine permease yicE| Length = 463 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +1 Query: 19 AILITQQTQTASGILSLLREPETKRGILFWLLTMAQRDKKDQEPTELR-APE 171 A L+ T ASG+ + REP +R IL L++A Q+P L+ APE Sbjct: 383 ATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPE 434
>YICE_ECOLI (P0AGM9) Putative purine permease yicE| Length = 463 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +1 Query: 19 AILITQQTQTASGILSLLREPETKRGILFWLLTMAQRDKKDQEPTELR-APE 171 A L+ T ASG+ + REP +R IL L++A Q+P L+ APE Sbjct: 383 ATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPE 434
>YICE_ECOL6 (P0AGN0) Putative purine permease yicE| Length = 463 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +1 Query: 19 AILITQQTQTASGILSLLREPETKRGILFWLLTMAQRDKKDQEPTELR-APE 171 A L+ T ASG+ + REP +R IL L++A Q+P L+ APE Sbjct: 383 ATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPE 434
>YICE_ECO57 (P0AGN1) Putative purine permease yicE| Length = 463 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +1 Query: 19 AILITQQTQTASGILSLLREPETKRGILFWLLTMAQRDKKDQEPTELR-APE 171 A L+ T ASG+ + REP +R IL L++A Q+P L+ APE Sbjct: 383 ATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPE 434
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +1 Query: 193 CGFPGNPATQNLCQNCF 243 CGF G+ T NLC CF Sbjct: 20 CGFWGSSKTMNLCSKCF 36
>TFF1_MOUSE (Q08423) Trefoil factor 1 precursor (pS2 protein)| Length = 87 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +1 Query: 97 ILFWLLTMAQRDKKDQEPTELRAPEITLCANSCGFPGNPATQNLCQNC 240 + F L AQ + QE T + AP + +CGFPG A Q + C Sbjct: 15 LAFGSLAQAQAQAQAQEETCIMAPRERI---NCGFPGVTAQQCTERGC 59
>HEMK_HUMAN (Q9Y5R4) HemK methyltransferase family member 1 (EC 2.1.1.-)| (M.HsaHemKP) Length = 338 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = -2 Query: 230 QRFCVAGLPGNPQLLAHSVISGALS-SVGS*SFLSRCAIVNNQKRIPLLVSGSLSRLRIP 54 QR G PG+P +L SGA+S S+ S SR V+ ++ L + RLR+ Sbjct: 150 QRSHAVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAISLTHENAQRLRLQ 209 Query: 53 LAVWV 39 +W+ Sbjct: 210 DRIWI 214
>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (hDido1) Length = 2240 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%) Frame = +1 Query: 31 TQQTQTASGILSLLREPETKRGILFW---------LLTMAQRDKKDQEPTELRAPE 171 ++ + T G+L +EPE +G++ L A +D KD+EP +L P+ Sbjct: 203 SEASDTVEGVLPSKQEPENDQGVVSQAGKDDRESKLEGKAAQDIKDEEPGDLGRPK 258
>RNT1_YEAST (Q02555) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 471 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -2 Query: 116 VNNQKRIPLLVSGSLSRLRIPLA 48 VNNQ R+P+ + SLSR ++ LA Sbjct: 80 VNNQDRVPVQILPSLSRYQLKLA 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,611,897 Number of Sequences: 219361 Number of extensions: 456682 Number of successful extensions: 1553 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1492 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1552 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
